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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 88036.EFJ08055 |
PFAMs | Hint |
Max annot lvl | 35493|Streptophyta |
KEGG ko | ko:K06224 |
KEGG Pathway | ko04341,map04341 |
KEGG Module | M00678 |
Evalue | 2.77e-19 |
EggNOG OGs | KOG3638@1|root,KOG3638@2759|Eukaryota,37ZDK@33090|Viridiplantae,3GN67@35493|Streptophyta |
Description | Hint module |
COG category | T |
BRITE | ko00000,ko00001,ko00002,ko00536,ko01002 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=524bp MSSFLRFLVAMMCVGVVYAAVVPKFSLRPLVLPTVARLFDANTLLGVTMH KASADLTSTQCAGATILHEAVGFCNNSSGGLDDVSIIPHSAIVHDGMRCG TGHPLEYMFIIPASKLTDETTADSNGVLNVFQILSANPRALNAFNVLNDI DPVHVGVEANRPRICGEKVMFTVGTIFIFLRTRTGASDLNFGFAYLAATE LGMVSVKTDEQLCLYKETRKLAPGQDPLPTPTPSPTNVPKLPADSFVLQN APNMRQCFPLERANSTVPISMTPSIAPSSTPSPSPSPSATVQLVVDTTTI SPTPSASMSTSPRATSSPTPSPSLGSEMEGDATPAPDDSEDDFCFPESAR VELESGEVIPISNVNVGDRVRVDGGAYSEVYFFTHRVRNVIATFLRLSVS SGAVLTLTPTHYVPVGGRLKAARDIRIGDVLVLGNGTLDTVTRIAMTKEK GLFNPHTMGGTIVVDGIVASAFTESVLPSTGEALLSPLRLLYKSRLFDSF FKTIFAEGNTFLANMVPRGGPLF* back to topspliced messenger RNA >Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000159_pilon:723633..725204- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTTCGTTCCTGCGTTTCCTGGTTGCTATGATGTGTGTTGGTGTTGT CTACGCTGCTGTTGTTCCAAAGTTTTCACTCCGCCCACTAGTTCTTCCGA CTGTTGCTCGCTTGTTTGATGCAAACACTCTCTTGGGTGTGACTATGCAC AAAGCCTCTGCTGATCTGACTTCGACTCAATGCGCCGGCGCGACGATTCT TCACGAAGCGGTTGGATTTTGCAACAATTCATCGGGTGGGCTGGATGATG TCTCCATCATCCCGCACAGTGCAATTGTTCATGATGGAATGCGATGTGGA ACCGGTCATCCTTTGGAGTACATGTTTATCATACCAGCTTCGAAACTGAC CGATGAAACAACTGCCGACTCGAACGGCGTTCTGAATGTTTTCCAGATTT TGTCGGCAAACCCCAGAGCTCTCAACGCGTTTAATGTACTCAATGATATT GATCCAGTGCACGTGGGTGTGGAGGCAAACAGACCTCGTATCTGCGGGGA AAAGGTCATGTTCACGGTTGGAACAATCTTTATATTCCTTCGTACCAGGA CTGGAGCCAGTGATCTGAACTTTGGGTTTGCGTACCTAGCCGCGACTGAG CTAGGTATGGTGAGTGTGAAGACCGACGAGCAATTGTGCCTCTACAAAGA AACACGAAAGCTGGCTCCGGGACAAGACCCCCTACCGACACCGACTCCTT CACCGACCAATGTTCCCAAACTCCCGGCCGACTCATTCGTCTTGCAAAAT GCGCCAAACATGAGGCAATGTTTTCCTTTGGAAAGAGCCAACAGCACTGT CCCGATTTCGATGACGCCTTCGATTGCCCCATCTTCGACTCCTTCTCCGA GTCCGTCACCAAGTGCGACGGTGCAGCTGGTGGTGGATACCACGACCATA TCCCCAACTCCGAGCGCATCAATGTCGACAAGCCCTAGGGCGACGTCAAG CCCAACTCCTTCGCCTTCTCTTGGATCGGAAATGGAGGGGGACGCAACCC CTGCTCCTGATGATAGCGAAGATGATTTTTGCTTTCCTGAGAGCGCTCGA GTAGAACTCGAGTCTGGTGAAGTAATCCCCATCTCCAATGTGAATGTGGG AGACAGGGTTAGAGTTGACGGGGGAGCATACTCTGAAGTGTACTTCTTTA CACATCGCGTGCGAAATGTCATTGCAACGTTTTTGAGGCTTTCCGTTTCA TCTGGGGCTGTTCTAACTCTAACCCCAACCCACTATGTACCGGTCGGTGG GCGCCTGAAGGCTGCGCGCGATATTCGAATTGGAGATGTATTGGTATTGG GTAACGGAACGTTAGACACTGTGACAAGAATCGCTATGACGAAGGAAAAA GGACTGTTCAACCCACATACAATGGGAGGAACAATTGTGGTGGACGGCAT TGTGGCATCTGCTTTCACGGAAAGTGTTTTACCATCAACTGGTGAGGCGC TTTTGTCGCCCTTGAGGCTGTTGTACAAGTCCCGGCTTTTCGATTCCTTT TTCAAGACAATTTTTGCCGAAGGGAACACATTTCTGGCCAATATGGTACC GCGAGGTGGTCCTCTATTCTAA back to topprotein sequence of Gchil10566.t1 >Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=524bp
MSSFLRFLVAMMCVGVVYAAVVPKFSLRPLVLPTVARLFDANTLLGVTMH KASADLTSTQCAGATILHEAVGFCNNSSGGLDDVSIIPHSAIVHDGMRCG TGHPLEYMFIIPASKLTDETTADSNGVLNVFQILSANPRALNAFNVLNDI DPVHVGVEANRPRICGEKVMFTVGTIFIFLRTRTGASDLNFGFAYLAATE LGMVSVKTDEQLCLYKETRKLAPGQDPLPTPTPSPTNVPKLPADSFVLQN APNMRQCFPLERANSTVPISMTPSIAPSSTPSPSPSPSATVQLVVDTTTI SPTPSASMSTSPRATSSPTPSPSLGSEMEGDATPAPDDSEDDFCFPESAR VELESGEVIPISNVNVGDRVRVDGGAYSEVYFFTHRVRNVIATFLRLSVS SGAVLTLTPTHYVPVGGRLKAARDIRIGDVLVLGNGTLDTVTRIAMTKEK GLFNPHTMGGTIVVDGIVASAFTESVLPSTGEALLSPLRLLYKSRLFDSF FKTIFAEGNTFLANMVPRGGPLF* back to topmRNA from alignment at tig00000159_pilon:723633..725204- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000159_pilon:723633..725204- (Gracilaria chilensis NLEC103_M9 male) ATGAGTTCGTTCCTGCGTTTCCTGGTTGCTATGATGTGTGTTGGTGTTGT
CTACGCTGCTGTTGTTCCAAAGTTTTCACTCCGCCCACTAGTTCTTCCGA
CTGTTGCTCGCTTGTTTGATGCAAACACTCTCTTGGGTGTGACTATGCAC
AAAGCCTCTGCTGATCTGACTTCGACTCAATGCGCCGGCGCGACGATTCT
TCACGAAGCGGTTGGATTTTGCAACAATTCATCGGGTGGGCTGGATGATG
TCTCCATCATCCCGCACAGTGCAATTGTTCATGATGGAATGCGATGTGGA
ACCGGTCATCCTTTGGAGTACATGTTTATCATACCAGCTTCGAAACTGAC
CGATGAAACAACTGCCGACTCGAACGGCGTTCTGAATGTTTTCCAGATTT
TGTCGGCAAACCCCAGAGCTCTCAACGCGTTTAATGTACTCAATGATATT
GATCCAGTGCACGTGGGTGTGGAGGCAAACAGACCTCGTATCTGCGGGGA
AAAGGTCATGTTCACGGTTGGAACAATCTTTATATTCCTTCGTACCAGGA
CTGGAGCCAGTGATCTGAACTTTGGGTTTGCGTACCTAGCCGCGACTGAG
CTAGGTATGGTGAGTGTGAAGACCGACGAGCAATTGTGCCTCTACAAAGA
AACACGAAAGCTGGCTCCGGGACAAGACCCCCTACCGACACCGACTCCTT
CACCGACCAATGTTCCCAAACTCCCGGCCGACTCATTCGTCTTGCAAAAT
GCGCCAAACATGAGGCAATGTTTTCCTTTGGAAAGAGCCAACAGCACTGT
CCCGATTTCGATGACGCCTTCGATTGCCCCATCTTCGACTCCTTCTCCGA
GTCCGTCACCAAGTGCGACGGTGCAGCTGGTGGTGGATACCACGACCATA
TCCCCAACTCCGAGCGCATCAATGTCGACAAGCCCTAGGGCGACGTCAAG
CCCAACTCCTTCGCCTTCTCTTGGATCGGAAATGGAGGGGGACGCAACCC
CTGCTCCTGATGATAGCGAAGATGATTTTTGCTTTCCTGAGAGCGCTCGA
GTAGAACTCGAGTCTGGTGAAGTAATCCCCATCTCCAATGTGAATGTGGG
AGACAGGGTTAGAGTTGACGGGGGAGCATACTCTGAAGTGTACTTCTTTA
CACATCGCGTGCGAAATGTCATTGCAACGTTTTTGAGGCTTTCCGTTTCA
TCTGGGGCTGTTCTAACTCTAACCCCAACCCACTATGTACCGGTCGGTGG
GCGCCTGAAGGCTGCGCGCGATATTCGAATTGGAGATGTATTGGTATTGG
GTAACGGAACGTTAGACACTGTGACAAGAATCGCTATGACGAAGGAAAAA
GGACTGTTCAACCCACATACAATGGGAGGAACAATTGTGGTGGACGGCAT
TGTGGCATCTGCTTTCACGGAAAGTGTTTTACCATCAACTGGTGAGGCGC
TTTTGTCGCCCTTGAGGCTGTTGTACAAGTCCCGGCTTTTCGATTCCTTT
TTCAAGACAATTTTTGCCGAAGGGAACACATTTCTGGCCAATATGGTACC
GCGAGGTGGTCCTCTATTCTAA back to topCoding sequence (CDS) from alignment at tig00000159_pilon:723633..725204- >Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000159_pilon:723633..725204- (Gracilaria chilensis NLEC103_M9 male) ATGAGTTCGTTCCTGCGTTTCCTGGTTGCTATGATGTGTGTTGGTGTTGT CTACGCTGCTGTTGTTCCAAAGTTTTCACTCCGCCCACTAGTTCTTCCGA CTGTTGCTCGCTTGTTTGATGCAAACACTCTCTTGGGTGTGACTATGCAC AAAGCCTCTGCTGATCTGACTTCGACTCAATGCGCCGGCGCGACGATTCT TCACGAAGCGGTTGGATTTTGCAACAATTCATCGGGTGGGCTGGATGATG TCTCCATCATCCCGCACAGTGCAATTGTTCATGATGGAATGCGATGTGGA ACCGGTCATCCTTTGGAGTACATGTTTATCATACCAGCTTCGAAACTGAC CGATGAAACAACTGCCGACTCGAACGGCGTTCTGAATGTTTTCCAGATTT TGTCGGCAAACCCCAGAGCTCTCAACGCGTTTAATGTACTCAATGATATT GATCCAGTGCACGTGGGTGTGGAGGCAAACAGACCTCGTATCTGCGGGGA AAAGGTCATGTTCACGGTTGGAACAATCTTTATATTCCTTCGTACCAGGA CTGGAGCCAGTGATCTGAACTTTGGGTTTGCGTACCTAGCCGCGACTGAG CTAGGTATGGTGAGTGTGAAGACCGACGAGCAATTGTGCCTCTACAAAGA AACACGAAAGCTGGCTCCGGGACAAGACCCCCTACCGACACCGACTCCTT CACCGACCAATGTTCCCAAACTCCCGGCCGACTCATTCGTCTTGCAAAAT GCGCCAAACATGAGGCAATGTTTTCCTTTGGAAAGAGCCAACAGCACTGT CCCGATTTCGATGACGCCTTCGATTGCCCCATCTTCGACTCCTTCTCCGA GTCCGTCACCAAGTGCGACGGTGCAGCTGGTGGTGGATACCACGACCATA TCCCCAACTCCGAGCGCATCAATGTCGACAAGCCCTAGGGCGACGTCAAG CCCAACTCCTTCGCCTTCTCTTGGATCGGAAATGGAGGGGGACGCAACCC CTGCTCCTGATGATAGCGAAGATGATTTTTGCTTTCCTGAGAGCGCTCGA GTAGAACTCGAGTCTGGTGAAGTAATCCCCATCTCCAATGTGAATGTGGG AGACAGGGTTAGAGTTGACGGGGGAGCATACTCTGAAGTGTACTTCTTTA CACATCGCGTGCGAAATGTCATTGCAACGTTTTTGAGGCTTTCCGTTTCA TCTGGGGCTGTTCTAACTCTAACCCCAACCCACTATGTACCGGTCGGTGG GCGCCTGAAGGCTGCGCGCGATATTCGAATTGGAGATGTATTGGTATTGG GTAACGGAACGTTAGACACTGTGACAAGAATCGCTATGACGAAGGAAAAA GGACTGTTCAACCCACATACAATGGGAGGAACAATTGTGGTGGACGGCAT TGTGGCATCTGCTTTCACGGAAAGTGTTTTACCATCAACTGGTGAGGCGC TTTTGTCGCCCTTGAGGCTGTTGTACAAGTCCCGGCTTTTCGATTCCTTT TTCAAGACAATTTTTGCCGAAGGGAACACATTTCTGGCCAATATGGTACC GCGAGGTGGTCCTCTATTCTAA back to top
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