Gchil10566.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10566.t1
Unique NameGchil10566.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:723633..725204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ08055
PFAMsHint
Max annot lvl35493|Streptophyta
KEGG koko:K06224
KEGG Pathwayko04341,map04341
KEGG ModuleM00678
Evalue2.77e-19
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota,37ZDK@33090|Viridiplantae,3GN67@35493|Streptophyta
DescriptionHint module
COG categoryT
BRITEko00000,ko00001,ko00002,ko00536,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10566Gchil10566Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 723633..725204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10566.t1.stop1Gchil10566.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 723633..723635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10566.t1.CDS1Gchil10566.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 723633..725204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10566.t1.exon1Gchil10566.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 723633..725204 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10566.t1.start1Gchil10566.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 725202..725204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10566.t1Gchil10566.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 723633..725204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=524bp
MSSFLRFLVAMMCVGVVYAAVVPKFSLRPLVLPTVARLFDANTLLGVTMH
KASADLTSTQCAGATILHEAVGFCNNSSGGLDDVSIIPHSAIVHDGMRCG
TGHPLEYMFIIPASKLTDETTADSNGVLNVFQILSANPRALNAFNVLNDI
DPVHVGVEANRPRICGEKVMFTVGTIFIFLRTRTGASDLNFGFAYLAATE
LGMVSVKTDEQLCLYKETRKLAPGQDPLPTPTPSPTNVPKLPADSFVLQN
APNMRQCFPLERANSTVPISMTPSIAPSSTPSPSPSPSATVQLVVDTTTI
SPTPSASMSTSPRATSSPTPSPSLGSEMEGDATPAPDDSEDDFCFPESAR
VELESGEVIPISNVNVGDRVRVDGGAYSEVYFFTHRVRNVIATFLRLSVS
SGAVLTLTPTHYVPVGGRLKAARDIRIGDVLVLGNGTLDTVTRIAMTKEK
GLFNPHTMGGTIVVDGIVASAFTESVLPSTGEALLSPLRLLYKSRLFDSF
FKTIFAEGNTFLANMVPRGGPLF*
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spliced messenger RNA

>Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000159_pilon:723633..725204- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCGTTCCTGCGTTTCCTGGTTGCTATGATGTGTGTTGGTGTTGT
CTACGCTGCTGTTGTTCCAAAGTTTTCACTCCGCCCACTAGTTCTTCCGA
CTGTTGCTCGCTTGTTTGATGCAAACACTCTCTTGGGTGTGACTATGCAC
AAAGCCTCTGCTGATCTGACTTCGACTCAATGCGCCGGCGCGACGATTCT
TCACGAAGCGGTTGGATTTTGCAACAATTCATCGGGTGGGCTGGATGATG
TCTCCATCATCCCGCACAGTGCAATTGTTCATGATGGAATGCGATGTGGA
ACCGGTCATCCTTTGGAGTACATGTTTATCATACCAGCTTCGAAACTGAC
CGATGAAACAACTGCCGACTCGAACGGCGTTCTGAATGTTTTCCAGATTT
TGTCGGCAAACCCCAGAGCTCTCAACGCGTTTAATGTACTCAATGATATT
GATCCAGTGCACGTGGGTGTGGAGGCAAACAGACCTCGTATCTGCGGGGA
AAAGGTCATGTTCACGGTTGGAACAATCTTTATATTCCTTCGTACCAGGA
CTGGAGCCAGTGATCTGAACTTTGGGTTTGCGTACCTAGCCGCGACTGAG
CTAGGTATGGTGAGTGTGAAGACCGACGAGCAATTGTGCCTCTACAAAGA
AACACGAAAGCTGGCTCCGGGACAAGACCCCCTACCGACACCGACTCCTT
CACCGACCAATGTTCCCAAACTCCCGGCCGACTCATTCGTCTTGCAAAAT
GCGCCAAACATGAGGCAATGTTTTCCTTTGGAAAGAGCCAACAGCACTGT
CCCGATTTCGATGACGCCTTCGATTGCCCCATCTTCGACTCCTTCTCCGA
GTCCGTCACCAAGTGCGACGGTGCAGCTGGTGGTGGATACCACGACCATA
TCCCCAACTCCGAGCGCATCAATGTCGACAAGCCCTAGGGCGACGTCAAG
CCCAACTCCTTCGCCTTCTCTTGGATCGGAAATGGAGGGGGACGCAACCC
CTGCTCCTGATGATAGCGAAGATGATTTTTGCTTTCCTGAGAGCGCTCGA
GTAGAACTCGAGTCTGGTGAAGTAATCCCCATCTCCAATGTGAATGTGGG
AGACAGGGTTAGAGTTGACGGGGGAGCATACTCTGAAGTGTACTTCTTTA
CACATCGCGTGCGAAATGTCATTGCAACGTTTTTGAGGCTTTCCGTTTCA
TCTGGGGCTGTTCTAACTCTAACCCCAACCCACTATGTACCGGTCGGTGG
GCGCCTGAAGGCTGCGCGCGATATTCGAATTGGAGATGTATTGGTATTGG
GTAACGGAACGTTAGACACTGTGACAAGAATCGCTATGACGAAGGAAAAA
GGACTGTTCAACCCACATACAATGGGAGGAACAATTGTGGTGGACGGCAT
TGTGGCATCTGCTTTCACGGAAAGTGTTTTACCATCAACTGGTGAGGCGC
TTTTGTCGCCCTTGAGGCTGTTGTACAAGTCCCGGCTTTTCGATTCCTTT
TTCAAGACAATTTTTGCCGAAGGGAACACATTTCTGGCCAATATGGTACC
GCGAGGTGGTCCTCTATTCTAA
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protein sequence of Gchil10566.t1

>Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=524bp
MSSFLRFLVAMMCVGVVYAAVVPKFSLRPLVLPTVARLFDANTLLGVTMH
KASADLTSTQCAGATILHEAVGFCNNSSGGLDDVSIIPHSAIVHDGMRCG
TGHPLEYMFIIPASKLTDETTADSNGVLNVFQILSANPRALNAFNVLNDI
DPVHVGVEANRPRICGEKVMFTVGTIFIFLRTRTGASDLNFGFAYLAATE
LGMVSVKTDEQLCLYKETRKLAPGQDPLPTPTPSPTNVPKLPADSFVLQN
APNMRQCFPLERANSTVPISMTPSIAPSSTPSPSPSPSATVQLVVDTTTI
SPTPSASMSTSPRATSSPTPSPSLGSEMEGDATPAPDDSEDDFCFPESAR
VELESGEVIPISNVNVGDRVRVDGGAYSEVYFFTHRVRNVIATFLRLSVS
SGAVLTLTPTHYVPVGGRLKAARDIRIGDVLVLGNGTLDTVTRIAMTKEK
GLFNPHTMGGTIVVDGIVASAFTESVLPSTGEALLSPLRLLYKSRLFDSF
FKTIFAEGNTFLANMVPRGGPLF*
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mRNA from alignment at tig00000159_pilon:723633..725204-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000159_pilon:723633..725204- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCGTTCCTGCGTTTCCTGGTTGCTATGATGTGTGTTGGTGTTGT
CTACGCTGCTGTTGTTCCAAAGTTTTCACTCCGCCCACTAGTTCTTCCGA
CTGTTGCTCGCTTGTTTGATGCAAACACTCTCTTGGGTGTGACTATGCAC
AAAGCCTCTGCTGATCTGACTTCGACTCAATGCGCCGGCGCGACGATTCT
TCACGAAGCGGTTGGATTTTGCAACAATTCATCGGGTGGGCTGGATGATG
TCTCCATCATCCCGCACAGTGCAATTGTTCATGATGGAATGCGATGTGGA
ACCGGTCATCCTTTGGAGTACATGTTTATCATACCAGCTTCGAAACTGAC
CGATGAAACAACTGCCGACTCGAACGGCGTTCTGAATGTTTTCCAGATTT
TGTCGGCAAACCCCAGAGCTCTCAACGCGTTTAATGTACTCAATGATATT
GATCCAGTGCACGTGGGTGTGGAGGCAAACAGACCTCGTATCTGCGGGGA
AAAGGTCATGTTCACGGTTGGAACAATCTTTATATTCCTTCGTACCAGGA
CTGGAGCCAGTGATCTGAACTTTGGGTTTGCGTACCTAGCCGCGACTGAG
CTAGGTATGGTGAGTGTGAAGACCGACGAGCAATTGTGCCTCTACAAAGA
AACACGAAAGCTGGCTCCGGGACAAGACCCCCTACCGACACCGACTCCTT
CACCGACCAATGTTCCCAAACTCCCGGCCGACTCATTCGTCTTGCAAAAT
GCGCCAAACATGAGGCAATGTTTTCCTTTGGAAAGAGCCAACAGCACTGT
CCCGATTTCGATGACGCCTTCGATTGCCCCATCTTCGACTCCTTCTCCGA
GTCCGTCACCAAGTGCGACGGTGCAGCTGGTGGTGGATACCACGACCATA
TCCCCAACTCCGAGCGCATCAATGTCGACAAGCCCTAGGGCGACGTCAAG
CCCAACTCCTTCGCCTTCTCTTGGATCGGAAATGGAGGGGGACGCAACCC
CTGCTCCTGATGATAGCGAAGATGATTTTTGCTTTCCTGAGAGCGCTCGA
GTAGAACTCGAGTCTGGTGAAGTAATCCCCATCTCCAATGTGAATGTGGG
AGACAGGGTTAGAGTTGACGGGGGAGCATACTCTGAAGTGTACTTCTTTA
CACATCGCGTGCGAAATGTCATTGCAACGTTTTTGAGGCTTTCCGTTTCA
TCTGGGGCTGTTCTAACTCTAACCCCAACCCACTATGTACCGGTCGGTGG
GCGCCTGAAGGCTGCGCGCGATATTCGAATTGGAGATGTATTGGTATTGG
GTAACGGAACGTTAGACACTGTGACAAGAATCGCTATGACGAAGGAAAAA
GGACTGTTCAACCCACATACAATGGGAGGAACAATTGTGGTGGACGGCAT
TGTGGCATCTGCTTTCACGGAAAGTGTTTTACCATCAACTGGTGAGGCGC
TTTTGTCGCCCTTGAGGCTGTTGTACAAGTCCCGGCTTTTCGATTCCTTT
TTCAAGACAATTTTTGCCGAAGGGAACACATTTCTGGCCAATATGGTACC
GCGAGGTGGTCCTCTATTCTAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:723633..725204-

>Gchil10566.t1 ID=Gchil10566.t1|Name=Gchil10566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000159_pilon:723633..725204- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCGTTCCTGCGTTTCCTGGTTGCTATGATGTGTGTTGGTGTTGT
CTACGCTGCTGTTGTTCCAAAGTTTTCACTCCGCCCACTAGTTCTTCCGA
CTGTTGCTCGCTTGTTTGATGCAAACACTCTCTTGGGTGTGACTATGCAC
AAAGCCTCTGCTGATCTGACTTCGACTCAATGCGCCGGCGCGACGATTCT
TCACGAAGCGGTTGGATTTTGCAACAATTCATCGGGTGGGCTGGATGATG
TCTCCATCATCCCGCACAGTGCAATTGTTCATGATGGAATGCGATGTGGA
ACCGGTCATCCTTTGGAGTACATGTTTATCATACCAGCTTCGAAACTGAC
CGATGAAACAACTGCCGACTCGAACGGCGTTCTGAATGTTTTCCAGATTT
TGTCGGCAAACCCCAGAGCTCTCAACGCGTTTAATGTACTCAATGATATT
GATCCAGTGCACGTGGGTGTGGAGGCAAACAGACCTCGTATCTGCGGGGA
AAAGGTCATGTTCACGGTTGGAACAATCTTTATATTCCTTCGTACCAGGA
CTGGAGCCAGTGATCTGAACTTTGGGTTTGCGTACCTAGCCGCGACTGAG
CTAGGTATGGTGAGTGTGAAGACCGACGAGCAATTGTGCCTCTACAAAGA
AACACGAAAGCTGGCTCCGGGACAAGACCCCCTACCGACACCGACTCCTT
CACCGACCAATGTTCCCAAACTCCCGGCCGACTCATTCGTCTTGCAAAAT
GCGCCAAACATGAGGCAATGTTTTCCTTTGGAAAGAGCCAACAGCACTGT
CCCGATTTCGATGACGCCTTCGATTGCCCCATCTTCGACTCCTTCTCCGA
GTCCGTCACCAAGTGCGACGGTGCAGCTGGTGGTGGATACCACGACCATA
TCCCCAACTCCGAGCGCATCAATGTCGACAAGCCCTAGGGCGACGTCAAG
CCCAACTCCTTCGCCTTCTCTTGGATCGGAAATGGAGGGGGACGCAACCC
CTGCTCCTGATGATAGCGAAGATGATTTTTGCTTTCCTGAGAGCGCTCGA
GTAGAACTCGAGTCTGGTGAAGTAATCCCCATCTCCAATGTGAATGTGGG
AGACAGGGTTAGAGTTGACGGGGGAGCATACTCTGAAGTGTACTTCTTTA
CACATCGCGTGCGAAATGTCATTGCAACGTTTTTGAGGCTTTCCGTTTCA
TCTGGGGCTGTTCTAACTCTAACCCCAACCCACTATGTACCGGTCGGTGG
GCGCCTGAAGGCTGCGCGCGATATTCGAATTGGAGATGTATTGGTATTGG
GTAACGGAACGTTAGACACTGTGACAAGAATCGCTATGACGAAGGAAAAA
GGACTGTTCAACCCACATACAATGGGAGGAACAATTGTGGTGGACGGCAT
TGTGGCATCTGCTTTCACGGAAAGTGTTTTACCATCAACTGGTGAGGCGC
TTTTGTCGCCCTTGAGGCTGTTGTACAAGTCCCGGCTTTTCGATTCCTTT
TTCAAGACAATTTTTGCCGAAGGGAACACATTTCTGGCCAATATGGTACC
GCGAGGTGGTCCTCTATTCTAA
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