Gchil10564.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10564.t1
Unique NameGchil10564.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length473
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:719964..721382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1385935.N836_28170
PFAMsTauE
Max annot lvl1117|Cyanobacteria
KEGG koko:K07090
Evalue3.91e-24
EggNOG OGsCOG0730@1|root,COG0730@2|Bacteria,1G76Y@1117|Cyanobacteria
Descriptionmembrane transporter protein
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10564Gchil10564Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 719964..721382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10564.t1.stop1Gchil10564.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 719964..719966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10564.t1.CDS1Gchil10564.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 719964..721382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10564.t1.exon1Gchil10564.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 719964..721382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10564.t1.start1Gchil10564.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 721380..721382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10564.t1Gchil10564.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 719964..721382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10564.t1 ID=Gchil10564.t1|Name=Gchil10564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=473bp
MDAWLAFASPVQLSLTRVLAARAPPRRPRCSPVPHAALHHRPKSQPFSPA
TPHFRLQTPPPRSTSSPYSSSSSSSSSAPSPPSAPSPPSAPSPPSASSSP
SASSSPSASSSPSASSSPSASSPATSKPQSSTAAPRSPPPPSLSQPPVLE
RSAADPEPPSPPSPPTSVSPTLWGATTAGRAVRTTVAAATVLAALALPLV
TRSPAPDLSEPSDTTFWEALYAAINGPHFTVAAGMGLSALVQALTGFGFA
IVSVGALTQLPWIANSSVFNTVQPVAATLGALTGWLLLLPNLKEVKWRQI
SVLLIASTLTTPIGALLPELIDPNLLIHILGALISGYVLYSLTGISVPKQ
LGRTPAAWILGMFAGALGGAFDITGPPLVVHAEAAGWDSANGEFRRNLLA
VVSVNSTVVVLWDWLSGRLNDFYYTHFLLYAIPTSLIGIVLGKYLSDRMD
ASMFKKVVLGTCMIMGIKLLLS*
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spliced messenger RNA

>Gchil10564.t1 ID=Gchil10564.t1|Name=Gchil10564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000159_pilon:719964..721382- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTTGGCTTGCTTTCGCTTCGCCCGTGCAGCTATCGCTCACACG
CGTCTTGGCCGCCCGAGCGCCGCCGCGCCGCCCGCGCTGCTCGCCCGTTC
CGCACGCCGCATTGCATCATCGCCCCAAGTCGCAGCCCTTTTCCCCCGCC
ACCCCGCACTTCCGCCTGCAAACCCCTCCGCCGCGTTCAACCTCCTCTCC
TTATTCGTCTTCTTCGTCTTCTTCGTCTTCTGCGCCTTCCCCGCCTTCTG
CGCCTTCCCCGCCTTCTGCGCCTTCCCCGCCTTCCGCGTCTTCCTCGCCT
TCCGCGTCTTCCTCGCCTTCCGCGTCTTCCTCGCCTTCCGCGTCTTCCTC
GCCCTCCGCATCCTCCCCGGCCACCTCCAAACCCCAATCTTCAACCGCTG
CACCGCGCTCCCCGCCGCCACCGTCGCTTTCGCAACCACCCGTCTTAGAG
CGCTCTGCCGCTGACCCCGAGCCCCCATCGCCCCCGTCGCCTCCCACTTC
TGTCTCCCCCACCCTGTGGGGCGCCACTACCGCCGGCCGCGCCGTGAGAA
CTACTGTCGCTGCCGCCACTGTACTGGCTGCGCTGGCACTCCCGCTCGTA
ACCCGCTCCCCGGCCCCAGACCTCTCCGAGCCGTCCGATACCACCTTTTG
GGAGGCCCTCTATGCCGCCATCAACGGACCTCATTTCACTGTCGCCGCTG
GAATGGGGCTCTCCGCGCTTGTTCAAGCGCTCACCGGTTTTGGCTTTGCC
ATTGTTTCCGTCGGCGCCCTCACCCAGCTCCCATGGATCGCCAATAGTTC
TGTCTTCAATACCGTGCAGCCAGTCGCCGCCACCTTGGGTGCCCTTACTG
GCTGGTTACTACTGCTTCCGAACCTCAAGGAAGTTAAATGGCGACAGATC
TCCGTCCTTCTCATTGCCTCTACCCTCACTACCCCGATCGGTGCTCTACT
ACCGGAGCTCATCGATCCTAACCTGCTTATACACATCTTAGGCGCCCTCA
TCTCTGGCTACGTTTTGTATTCCTTGACAGGAATTAGTGTCCCCAAGCAA
CTCGGCCGTACGCCCGCCGCATGGATCTTGGGCATGTTTGCTGGTGCTCT
TGGCGGTGCTTTTGACATAACGGGGCCTCCACTTGTCGTACACGCTGAGG
CTGCAGGTTGGGATTCTGCGAATGGGGAGTTCAGACGAAACCTGCTGGCC
GTCGTCAGCGTCAACAGCACTGTCGTCGTGCTCTGGGACTGGCTCTCTGG
ACGCCTTAACGATTTCTATTACACCCATTTCCTTCTTTACGCCATCCCCA
CGTCTTTGATTGGTATCGTACTCGGCAAGTATCTCTCTGATAGAATGGAT
GCCTCTATGTTTAAGAAGGTTGTCTTGGGCACGTGCATGATCATGGGTAT
CAAGTTGTTGCTGTCATGA
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protein sequence of Gchil10564.t1

>Gchil10564.t1 ID=Gchil10564.t1|Name=Gchil10564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=473bp
MDAWLAFASPVQLSLTRVLAARAPPRRPRCSPVPHAALHHRPKSQPFSPA
TPHFRLQTPPPRSTSSPYSSSSSSSSSAPSPPSAPSPPSAPSPPSASSSP
SASSSPSASSSPSASSSPSASSPATSKPQSSTAAPRSPPPPSLSQPPVLE
RSAADPEPPSPPSPPTSVSPTLWGATTAGRAVRTTVAAATVLAALALPLV
TRSPAPDLSEPSDTTFWEALYAAINGPHFTVAAGMGLSALVQALTGFGFA
IVSVGALTQLPWIANSSVFNTVQPVAATLGALTGWLLLLPNLKEVKWRQI
SVLLIASTLTTPIGALLPELIDPNLLIHILGALISGYVLYSLTGISVPKQ
LGRTPAAWILGMFAGALGGAFDITGPPLVVHAEAAGWDSANGEFRRNLLA
VVSVNSTVVVLWDWLSGRLNDFYYTHFLLYAIPTSLIGIVLGKYLSDRMD
ASMFKKVVLGTCMIMGIKLLLS*
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mRNA from alignment at tig00000159_pilon:719964..721382-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10564.t1 ID=Gchil10564.t1|Name=Gchil10564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000159_pilon:719964..721382- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCTTGGCTTGCTTTCGCTTCGCCCGTGCAGCTATCGCTCACACG
CGTCTTGGCCGCCCGAGCGCCGCCGCGCCGCCCGCGCTGCTCGCCCGTTC
CGCACGCCGCATTGCATCATCGCCCCAAGTCGCAGCCCTTTTCCCCCGCC
ACCCCGCACTTCCGCCTGCAAACCCCTCCGCCGCGTTCAACCTCCTCTCC
TTATTCGTCTTCTTCGTCTTCTTCGTCTTCTGCGCCTTCCCCGCCTTCTG
CGCCTTCCCCGCCTTCTGCGCCTTCCCCGCCTTCCGCGTCTTCCTCGCCT
TCCGCGTCTTCCTCGCCTTCCGCGTCTTCCTCGCCTTCCGCGTCTTCCTC
GCCCTCCGCATCCTCCCCGGCCACCTCCAAACCCCAATCTTCAACCGCTG
CACCGCGCTCCCCGCCGCCACCGTCGCTTTCGCAACCACCCGTCTTAGAG
CGCTCTGCCGCTGACCCCGAGCCCCCATCGCCCCCGTCGCCTCCCACTTC
TGTCTCCCCCACCCTGTGGGGCGCCACTACCGCCGGCCGCGCCGTGAGAA
CTACTGTCGCTGCCGCCACTGTACTGGCTGCGCTGGCACTCCCGCTCGTA
ACCCGCTCCCCGGCCCCAGACCTCTCCGAGCCGTCCGATACCACCTTTTG
GGAGGCCCTCTATGCCGCCATCAACGGACCTCATTTCACTGTCGCCGCTG
GAATGGGGCTCTCCGCGCTTGTTCAAGCGCTCACCGGTTTTGGCTTTGCC
ATTGTTTCCGTCGGCGCCCTCACCCAGCTCCCATGGATCGCCAATAGTTC
TGTCTTCAATACCGTGCAGCCAGTCGCCGCCACCTTGGGTGCCCTTACTG
GCTGGTTACTACTGCTTCCGAACCTCAAGGAAGTTAAATGGCGACAGATC
TCCGTCCTTCTCATTGCCTCTACCCTCACTACCCCGATCGGTGCTCTACT
ACCGGAGCTCATCGATCCTAACCTGCTTATACACATCTTAGGCGCCCTCA
TCTCTGGCTACGTTTTGTATTCCTTGACAGGAATTAGTGTCCCCAAGCAA
CTCGGCCGTACGCCCGCCGCATGGATCTTGGGCATGTTTGCTGGTGCTCT
TGGCGGTGCTTTTGACATAACGGGGCCTCCACTTGTCGTACACGCTGAGG
CTGCAGGTTGGGATTCTGCGAATGGGGAGTTCAGACGAAACCTGCTGGCC
GTCGTCAGCGTCAACAGCACTGTCGTCGTGCTCTGGGACTGGCTCTCTGG
ACGCCTTAACGATTTCTATTACACCCATTTCCTTCTTTACGCCATCCCCA
CGTCTTTGATTGGTATCGTACTCGGCAAGTATCTCTCTGATAGAATGGAT
GCCTCTATGTTTAAGAAGGTTGTCTTGGGCACGTGCATGATCATGGGTAT
CAAGTTGTTGCTGTCATGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:719964..721382-

>Gchil10564.t1 ID=Gchil10564.t1|Name=Gchil10564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1419bp|location=Sequence derived from alignment at tig00000159_pilon:719964..721382- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCTTGGCTTGCTTTCGCTTCGCCCGTGCAGCTATCGCTCACACG
CGTCTTGGCCGCCCGAGCGCCGCCGCGCCGCCCGCGCTGCTCGCCCGTTC
CGCACGCCGCATTGCATCATCGCCCCAAGTCGCAGCCCTTTTCCCCCGCC
ACCCCGCACTTCCGCCTGCAAACCCCTCCGCCGCGTTCAACCTCCTCTCC
TTATTCGTCTTCTTCGTCTTCTTCGTCTTCTGCGCCTTCCCCGCCTTCTG
CGCCTTCCCCGCCTTCTGCGCCTTCCCCGCCTTCCGCGTCTTCCTCGCCT
TCCGCGTCTTCCTCGCCTTCCGCGTCTTCCTCGCCTTCCGCGTCTTCCTC
GCCCTCCGCATCCTCCCCGGCCACCTCCAAACCCCAATCTTCAACCGCTG
CACCGCGCTCCCCGCCGCCACCGTCGCTTTCGCAACCACCCGTCTTAGAG
CGCTCTGCCGCTGACCCCGAGCCCCCATCGCCCCCGTCGCCTCCCACTTC
TGTCTCCCCCACCCTGTGGGGCGCCACTACCGCCGGCCGCGCCGTGAGAA
CTACTGTCGCTGCCGCCACTGTACTGGCTGCGCTGGCACTCCCGCTCGTA
ACCCGCTCCCCGGCCCCAGACCTCTCCGAGCCGTCCGATACCACCTTTTG
GGAGGCCCTCTATGCCGCCATCAACGGACCTCATTTCACTGTCGCCGCTG
GAATGGGGCTCTCCGCGCTTGTTCAAGCGCTCACCGGTTTTGGCTTTGCC
ATTGTTTCCGTCGGCGCCCTCACCCAGCTCCCATGGATCGCCAATAGTTC
TGTCTTCAATACCGTGCAGCCAGTCGCCGCCACCTTGGGTGCCCTTACTG
GCTGGTTACTACTGCTTCCGAACCTCAAGGAAGTTAAATGGCGACAGATC
TCCGTCCTTCTCATTGCCTCTACCCTCACTACCCCGATCGGTGCTCTACT
ACCGGAGCTCATCGATCCTAACCTGCTTATACACATCTTAGGCGCCCTCA
TCTCTGGCTACGTTTTGTATTCCTTGACAGGAATTAGTGTCCCCAAGCAA
CTCGGCCGTACGCCCGCCGCATGGATCTTGGGCATGTTTGCTGGTGCTCT
TGGCGGTGCTTTTGACATAACGGGGCCTCCACTTGTCGTACACGCTGAGG
CTGCAGGTTGGGATTCTGCGAATGGGGAGTTCAGACGAAACCTGCTGGCC
GTCGTCAGCGTCAACAGCACTGTCGTCGTGCTCTGGGACTGGCTCTCTGG
ACGCCTTAACGATTTCTATTACACCCATTTCCTTCTTTACGCCATCCCCA
CGTCTTTGATTGGTATCGTACTCGGCAAGTATCTCTCTGATAGAATGGAT
GCCTCTATGTTTAAGAAGGTTGTCTTGGGCACGTGCATGATCATGGGTAT
CAAGTTGTTGCTGTCATGA
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