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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005703367.1 |
Max annot lvl | 130081.XP_005703367.1|- |
Evalue | 2.43e-32 |
EggNOG OGs | 2D14A@1|root,2SGN0@2759|Eukaryota |
Description | Fringe-like |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp MYHTIAKRSRRTRIAILLRRIALRLPRRVIRLVCAAVACCIVVVFALFLR RRNAFRHALGGLRPSQDGLYFDKRGAPLAKSLWHSEALRDREHEAWTKVK YDVVVAVKTGHEVAQKRLKALREKGWWRVGRHVPNFLVVSDADDESVGAI GLKKYALDLVGMGSGKTAPAHWFDKSGWRGDKDKNLPAVHLMRTLYPGKK WYVLLDDDTYMFLDNFAKYIGSAEMNDSRAIYTGKVFYISRCGGFERDGS WAKNHSEPKGVFAHGGSGIVMNGLAVESMYKGIPKCIREFSSCWAGDMQI SLCLRKHGVLMMKRNRNTNGKHGISGTSVYEKHFTPFSASKSMSDKRYSK HWKSLELPLTFHKMGETEMGVMSEFEVLAAATNTSVHYSGLRKHLLSNGI LPDHSAHARESKQFSAEFLPQHLKR* back to topspliced messenger RNA >Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000159_pilon:297009..298286+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTACCACACGATCGCGAAGCGTTCACGACGAACGCGCATTGCAATATT GCTGCGCCGCATAGCGCTCAGGCTTCCTCGAAGAGTGATTCGGCTGGTGT GTGCGGCGGTGGCCTGTTGCATAGTTGTGGTGTTTGCATTGTTTTTGAGA CGGCGGAACGCTTTTCGCCACGCCCTGGGTGGACTGCGCCCGTCTCAAGA TGGGCTCTACTTTGACAAACGCGGTGCGCCACTTGCCAAATCTCTGTGGC ATTCGGAGGCACTGCGCGACAGGGAACATGAGGCTTGGACAAAGGTTAAA TACGATGTGGTGGTCGCCGTGAAAACCGGTCATGAGGTTGCTCAAAAGCG ACTCAAAGCGCTCAGAGAGAAGGGATGGTGGCGGGTGGGACGTCACGTGC CCAACTTTTTGGTAGTGAGCGACGCCGATGACGAAAGCGTGGGCGCCATC GGGCTGAAAAAGTATGCGTTAGATCTTGTTGGAATGGGGTCAGGAAAAAC GGCCCCCGCACATTGGTTTGACAAATCGGGATGGAGAGGCGATAAGGACA AGAATCTGCCGGCGGTGCATCTGATGCGAACATTATACCCCGGTAAAAAA TGGTACGTGTTGCTGGACGATGACACATACATGTTTCTGGACAACTTTGC AAAGTACATTGGCTCAGCAGAAATGAACGACAGTAGGGCGATCTACACGG GAAAGGTGTTTTACATTTCTCGGTGCGGCGGTTTTGAACGCGATGGATCG TGGGCAAAGAACCATTCGGAGCCGAAGGGAGTTTTTGCTCACGGCGGGAG CGGGATCGTGATGAACGGACTGGCGGTGGAAAGTATGTACAAGGGCATTC CAAAGTGCATCAGAGAGTTTAGTTCATGTTGGGCGGGTGACATGCAAATC AGCCTGTGTCTGAGAAAACACGGGGTACTGATGATGAAACGCAACAGAAA CACGAACGGTAAGCATGGTATCAGTGGAACATCGGTATACGAAAAGCATT TCACACCGTTTTCAGCCAGCAAGTCGATGTCCGACAAGCGGTACTCGAAG CATTGGAAAAGCCTCGAGTTGCCGCTGACGTTCCACAAGATGGGGGAGAC GGAGATGGGGGTGATGAGCGAGTTTGAAGTGTTAGCGGCGGCGACAAATA CTAGCGTGCACTACAGCGGGCTGCGCAAGCATTTGTTGAGCAACGGCATT CTGCCGGACCACTCGGCGCACGCGCGAGAGTCCAAACAGTTCTCTGCCGA GTTTTTGCCGCAGCACTTGAAACGATAA back to topprotein sequence of Gchil10499.t1 >Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MYHTIAKRSRRTRIAILLRRIALRLPRRVIRLVCAAVACCIVVVFALFLR RRNAFRHALGGLRPSQDGLYFDKRGAPLAKSLWHSEALRDREHEAWTKVK YDVVVAVKTGHEVAQKRLKALREKGWWRVGRHVPNFLVVSDADDESVGAI GLKKYALDLVGMGSGKTAPAHWFDKSGWRGDKDKNLPAVHLMRTLYPGKK WYVLLDDDTYMFLDNFAKYIGSAEMNDSRAIYTGKVFYISRCGGFERDGS WAKNHSEPKGVFAHGGSGIVMNGLAVESMYKGIPKCIREFSSCWAGDMQI SLCLRKHGVLMMKRNRNTNGKHGISGTSVYEKHFTPFSASKSMSDKRYSK HWKSLELPLTFHKMGETEMGVMSEFEVLAAATNTSVHYSGLRKHLLSNGI LPDHSAHARESKQFSAEFLPQHLKR* back to topmRNA from alignment at tig00000159_pilon:297009..298286+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000159_pilon:297009..298286+ (Gracilaria chilensis NLEC103_M9 male) ATGTACCACACGATCGCGAAGCGTTCACGACGAACGCGCATTGCAATATT
GCTGCGCCGCATAGCGCTCAGGCTTCCTCGAAGAGTGATTCGGCTGGTGT
GTGCGGCGGTGGCCTGTTGCATAGTTGTGGTGTTTGCATTGTTTTTGAGA
CGGCGGAACGCTTTTCGCCACGCCCTGGGTGGACTGCGCCCGTCTCAAGA
TGGGCTCTACTTTGACAAACGCGGTGCGCCACTTGCCAAATCTCTGTGGC
ATTCGGAGGCACTGCGCGACAGGGAACATGAGGCTTGGACAAAGGTTAAA
TACGATGTGGTGGTCGCCGTGAAAACCGGTCATGAGGTTGCTCAAAAGCG
ACTCAAAGCGCTCAGAGAGAAGGGATGGTGGCGGGTGGGACGTCACGTGC
CCAACTTTTTGGTAGTGAGCGACGCCGATGACGAAAGCGTGGGCGCCATC
GGGCTGAAAAAGTATGCGTTAGATCTTGTTGGAATGGGGTCAGGAAAAAC
GGCCCCCGCACATTGGTTTGACAAATCGGGATGGAGAGGCGATAAGGACA
AGAATCTGCCGGCGGTGCATCTGATGCGAACATTATACCCCGGTAAAAAA
TGGTACGTGTTGCTGGACGATGACACATACATGTTTCTGGACAACTTTGC
AAAGTACATTGGCTCAGCAGAAATGAACGACAGTAGGGCGATCTACACGG
GAAAGGTGTTTTACATTTCTCGGTGCGGCGGTTTTGAACGCGATGGATCG
TGGGCAAAGAACCATTCGGAGCCGAAGGGAGTTTTTGCTCACGGCGGGAG
CGGGATCGTGATGAACGGACTGGCGGTGGAAAGTATGTACAAGGGCATTC
CAAAGTGCATCAGAGAGTTTAGTTCATGTTGGGCGGGTGACATGCAAATC
AGCCTGTGTCTGAGAAAACACGGGGTACTGATGATGAAACGCAACAGAAA
CACGAACGGTAAGCATGGTATCAGTGGAACATCGGTATACGAAAAGCATT
TCACACCGTTTTCAGCCAGCAAGTCGATGTCCGACAAGCGGTACTCGAAG
CATTGGAAAAGCCTCGAGTTGCCGCTGACGTTCCACAAGATGGGGGAGAC
GGAGATGGGGGTGATGAGCGAGTTTGAAGTGTTAGCGGCGGCGACAAATA
CTAGCGTGCACTACAGCGGGCTGCGCAAGCATTTGTTGAGCAACGGCATT
CTGCCGGACCACTCGGCGCACGCGCGAGAGTCCAAACAGTTCTCTGCCGA
GTTTTTGCCGCAGCACTTGAAACGATAA back to topCoding sequence (CDS) from alignment at tig00000159_pilon:297009..298286+ >Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00000159_pilon:297009..298286+ (Gracilaria chilensis NLEC103_M9 male) ATGTACCACACGATCGCGAAGCGTTCACGACGAACGCGCATTGCAATATT GCTGCGCCGCATAGCGCTCAGGCTTCCTCGAAGAGTGATTCGGCTGGTGT GTGCGGCGGTGGCCTGTTGCATAGTTGTGGTGTTTGCATTGTTTTTGAGA CGGCGGAACGCTTTTCGCCACGCCCTGGGTGGACTGCGCCCGTCTCAAGA TGGGCTCTACTTTGACAAACGCGGTGCGCCACTTGCCAAATCTCTGTGGC ATTCGGAGGCACTGCGCGACAGGGAACATGAGGCTTGGACAAAGGTTAAA TACGATGTGGTGGTCGCCGTGAAAACCGGTCATGAGGTTGCTCAAAAGCG ACTCAAAGCGCTCAGAGAGAAGGGATGGTGGCGGGTGGGACGTCACGTGC CCAACTTTTTGGTAGTGAGCGACGCCGATGACGAAAGCGTGGGCGCCATC GGGCTGAAAAAGTATGCGTTAGATCTTGTTGGAATGGGGTCAGGAAAAAC GGCCCCCGCACATTGGTTTGACAAATCGGGATGGAGAGGCGATAAGGACA AGAATCTGCCGGCGGTGCATCTGATGCGAACATTATACCCCGGTAAAAAA TGGTACGTGTTGCTGGACGATGACACATACATGTTTCTGGACAACTTTGC AAAGTACATTGGCTCAGCAGAAATGAACGACAGTAGGGCGATCTACACGG GAAAGGTGTTTTACATTTCTCGGTGCGGCGGTTTTGAACGCGATGGATCG TGGGCAAAGAACCATTCGGAGCCGAAGGGAGTTTTTGCTCACGGCGGGAG CGGGATCGTGATGAACGGACTGGCGGTGGAAAGTATGTACAAGGGCATTC CAAAGTGCATCAGAGAGTTTAGTTCATGTTGGGCGGGTGACATGCAAATC AGCCTGTGTCTGAGAAAACACGGGGTACTGATGATGAAACGCAACAGAAA CACGAACGGTAAGCATGGTATCAGTGGAACATCGGTATACGAAAAGCATT TCACACCGTTTTCAGCCAGCAAGTCGATGTCCGACAAGCGGTACTCGAAG CATTGGAAAAGCCTCGAGTTGCCGCTGACGTTCCACAAGATGGGGGAGAC GGAGATGGGGGTGATGAGCGAGTTTGAAGTGTTAGCGGCGGCGACAAATA CTAGCGTGCACTACAGCGGGCTGCGCAAGCATTTGTTGAGCAACGGCATT CTGCCGGACCACTCGGCGCACGCGCGAGAGTCCAAACAGTTCTCTGCCGA GTTTTTGCCGCAGCACTTGAAACGATAA back to top
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