Gchil10499.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10499.t1
Unique Name	Gchil10499.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000159_pilon	contig	tig00000159_pilon:297009..298286 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703367.1
Max annot lvl	130081.XP_005703367.1\|-
Evalue	2.43e-32
EggNOG OGs	2D14A@1\|root,2SGN0@2759\|Eukaryota
Description	Fringe-like
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10499	Gchil10499	Gracilaria chilensis NLEC103_M9 male	gene	tig00000159_pilon 297009..298286 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10499.t1.start1	Gchil10499.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000159_pilon 297009..297011 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10499.t1.CDS1	Gchil10499.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000159_pilon 297009..298286 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10499.t1.exon1	Gchil10499.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000159_pilon 297009..298286 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10499.t1.stop1	Gchil10499.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000159_pilon 298284..298286 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10499.t1	Gchil10499.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000159_pilon 297009..298286 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000159_pilon:297009..298286+
coding sequence from alignment at tig00000159_pilon:297009..298286+

mRNA sequence

>Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MYHTIAKRSRRTRIAILLRRIALRLPRRVIRLVCAAVACCIVVVFALFLR
RRNAFRHALGGLRPSQDGLYFDKRGAPLAKSLWHSEALRDREHEAWTKVK
YDVVVAVKTGHEVAQKRLKALREKGWWRVGRHVPNFLVVSDADDESVGAI
GLKKYALDLVGMGSGKTAPAHWFDKSGWRGDKDKNLPAVHLMRTLYPGKK
WYVLLDDDTYMFLDNFAKYIGSAEMNDSRAIYTGKVFYISRCGGFERDGS
WAKNHSEPKGVFAHGGSGIVMNGLAVESMYKGIPKCIREFSSCWAGDMQI
SLCLRKHGVLMMKRNRNTNGKHGISGTSVYEKHFTPFSASKSMSDKRYSK
HWKSLELPLTFHKMGETEMGVMSEFEVLAAATNTSVHYSGLRKHLLSNGI
LPDHSAHARESKQFSAEFLPQHLKR*

spliced messenger RNA

>Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000159_pilon:297009..298286+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCACACGATCGCGAAGCGTTCACGACGAACGCGCATTGCAATATT
GCTGCGCCGCATAGCGCTCAGGCTTCCTCGAAGAGTGATTCGGCTGGTGT
GTGCGGCGGTGGCCTGTTGCATAGTTGTGGTGTTTGCATTGTTTTTGAGA
CGGCGGAACGCTTTTCGCCACGCCCTGGGTGGACTGCGCCCGTCTCAAGA
TGGGCTCTACTTTGACAAACGCGGTGCGCCACTTGCCAAATCTCTGTGGC
ATTCGGAGGCACTGCGCGACAGGGAACATGAGGCTTGGACAAAGGTTAAA
TACGATGTGGTGGTCGCCGTGAAAACCGGTCATGAGGTTGCTCAAAAGCG
ACTCAAAGCGCTCAGAGAGAAGGGATGGTGGCGGGTGGGACGTCACGTGC
CCAACTTTTTGGTAGTGAGCGACGCCGATGACGAAAGCGTGGGCGCCATC
GGGCTGAAAAAGTATGCGTTAGATCTTGTTGGAATGGGGTCAGGAAAAAC
GGCCCCCGCACATTGGTTTGACAAATCGGGATGGAGAGGCGATAAGGACA
AGAATCTGCCGGCGGTGCATCTGATGCGAACATTATACCCCGGTAAAAAA
TGGTACGTGTTGCTGGACGATGACACATACATGTTTCTGGACAACTTTGC
AAAGTACATTGGCTCAGCAGAAATGAACGACAGTAGGGCGATCTACACGG
GAAAGGTGTTTTACATTTCTCGGTGCGGCGGTTTTGAACGCGATGGATCG
TGGGCAAAGAACCATTCGGAGCCGAAGGGAGTTTTTGCTCACGGCGGGAG
CGGGATCGTGATGAACGGACTGGCGGTGGAAAGTATGTACAAGGGCATTC
CAAAGTGCATCAGAGAGTTTAGTTCATGTTGGGCGGGTGACATGCAAATC
AGCCTGTGTCTGAGAAAACACGGGGTACTGATGATGAAACGCAACAGAAA
CACGAACGGTAAGCATGGTATCAGTGGAACATCGGTATACGAAAAGCATT
TCACACCGTTTTCAGCCAGCAAGTCGATGTCCGACAAGCGGTACTCGAAG
CATTGGAAAAGCCTCGAGTTGCCGCTGACGTTCCACAAGATGGGGGAGAC
GGAGATGGGGGTGATGAGCGAGTTTGAAGTGTTAGCGGCGGCGACAAATA
CTAGCGTGCACTACAGCGGGCTGCGCAAGCATTTGTTGAGCAACGGCATT
CTGCCGGACCACTCGGCGCACGCGCGAGAGTCCAAACAGTTCTCTGCCGA
GTTTTTGCCGCAGCACTTGAAACGATAA

protein sequence of Gchil10499.t1

>Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MYHTIAKRSRRTRIAILLRRIALRLPRRVIRLVCAAVACCIVVVFALFLR
RRNAFRHALGGLRPSQDGLYFDKRGAPLAKSLWHSEALRDREHEAWTKVK
YDVVVAVKTGHEVAQKRLKALREKGWWRVGRHVPNFLVVSDADDESVGAI
GLKKYALDLVGMGSGKTAPAHWFDKSGWRGDKDKNLPAVHLMRTLYPGKK
WYVLLDDDTYMFLDNFAKYIGSAEMNDSRAIYTGKVFYISRCGGFERDGS
WAKNHSEPKGVFAHGGSGIVMNGLAVESMYKGIPKCIREFSSCWAGDMQI
SLCLRKHGVLMMKRNRNTNGKHGISGTSVYEKHFTPFSASKSMSDKRYSK
HWKSLELPLTFHKMGETEMGVMSEFEVLAAATNTSVHYSGLRKHLLSNGI
LPDHSAHARESKQFSAEFLPQHLKR*

mRNA from alignment at tig00000159_pilon:297009..298286+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000159_pilon:297009..298286+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACCACACGATCGCGAAGCGTTCACGACGAACGCGCATTGCAATATT
GCTGCGCCGCATAGCGCTCAGGCTTCCTCGAAGAGTGATTCGGCTGGTGT
GTGCGGCGGTGGCCTGTTGCATAGTTGTGGTGTTTGCATTGTTTTTGAGA
CGGCGGAACGCTTTTCGCCACGCCCTGGGTGGACTGCGCCCGTCTCAAGA
TGGGCTCTACTTTGACAAACGCGGTGCGCCACTTGCCAAATCTCTGTGGC
ATTCGGAGGCACTGCGCGACAGGGAACATGAGGCTTGGACAAAGGTTAAA
TACGATGTGGTGGTCGCCGTGAAAACCGGTCATGAGGTTGCTCAAAAGCG
ACTCAAAGCGCTCAGAGAGAAGGGATGGTGGCGGGTGGGACGTCACGTGC
CCAACTTTTTGGTAGTGAGCGACGCCGATGACGAAAGCGTGGGCGCCATC
GGGCTGAAAAAGTATGCGTTAGATCTTGTTGGAATGGGGTCAGGAAAAAC
GGCCCCCGCACATTGGTTTGACAAATCGGGATGGAGAGGCGATAAGGACA
AGAATCTGCCGGCGGTGCATCTGATGCGAACATTATACCCCGGTAAAAAA
TGGTACGTGTTGCTGGACGATGACACATACATGTTTCTGGACAACTTTGC
AAAGTACATTGGCTCAGCAGAAATGAACGACAGTAGGGCGATCTACACGG
GAAAGGTGTTTTACATTTCTCGGTGCGGCGGTTTTGAACGCGATGGATCG
TGGGCAAAGAACCATTCGGAGCCGAAGGGAGTTTTTGCTCACGGCGGGAG
CGGGATCGTGATGAACGGACTGGCGGTGGAAAGTATGTACAAGGGCATTC
CAAAGTGCATCAGAGAGTTTAGTTCATGTTGGGCGGGTGACATGCAAATC
AGCCTGTGTCTGAGAAAACACGGGGTACTGATGATGAAACGCAACAGAAA
CACGAACGGTAAGCATGGTATCAGTGGAACATCGGTATACGAAAAGCATT
TCACACCGTTTTCAGCCAGCAAGTCGATGTCCGACAAGCGGTACTCGAAG
CATTGGAAAAGCCTCGAGTTGCCGCTGACGTTCCACAAGATGGGGGAGAC
GGAGATGGGGGTGATGAGCGAGTTTGAAGTGTTAGCGGCGGCGACAAATA
CTAGCGTGCACTACAGCGGGCTGCGCAAGCATTTGTTGAGCAACGGCATT
CTGCCGGACCACTCGGCGCACGCGCGAGAGTCCAAACAGTTCTCTGCCGA
GTTTTTGCCGCAGCACTTGAAACGATAA

Coding sequence (CDS) from alignment at tig00000159_pilon:297009..298286+

>Gchil10499.t1 ID=Gchil10499.t1|Name=Gchil10499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00000159_pilon:297009..298286+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACCACACGATCGCGAAGCGTTCACGACGAACGCGCATTGCAATATT
GCTGCGCCGCATAGCGCTCAGGCTTCCTCGAAGAGTGATTCGGCTGGTGT
GTGCGGCGGTGGCCTGTTGCATAGTTGTGGTGTTTGCATTGTTTTTGAGA
CGGCGGAACGCTTTTCGCCACGCCCTGGGTGGACTGCGCCCGTCTCAAGA
TGGGCTCTACTTTGACAAACGCGGTGCGCCACTTGCCAAATCTCTGTGGC
ATTCGGAGGCACTGCGCGACAGGGAACATGAGGCTTGGACAAAGGTTAAA
TACGATGTGGTGGTCGCCGTGAAAACCGGTCATGAGGTTGCTCAAAAGCG
ACTCAAAGCGCTCAGAGAGAAGGGATGGTGGCGGGTGGGACGTCACGTGC
CCAACTTTTTGGTAGTGAGCGACGCCGATGACGAAAGCGTGGGCGCCATC
GGGCTGAAAAAGTATGCGTTAGATCTTGTTGGAATGGGGTCAGGAAAAAC
GGCCCCCGCACATTGGTTTGACAAATCGGGATGGAGAGGCGATAAGGACA
AGAATCTGCCGGCGGTGCATCTGATGCGAACATTATACCCCGGTAAAAAA
TGGTACGTGTTGCTGGACGATGACACATACATGTTTCTGGACAACTTTGC
AAAGTACATTGGCTCAGCAGAAATGAACGACAGTAGGGCGATCTACACGG
GAAAGGTGTTTTACATTTCTCGGTGCGGCGGTTTTGAACGCGATGGATCG
TGGGCAAAGAACCATTCGGAGCCGAAGGGAGTTTTTGCTCACGGCGGGAG
CGGGATCGTGATGAACGGACTGGCGGTGGAAAGTATGTACAAGGGCATTC
CAAAGTGCATCAGAGAGTTTAGTTCATGTTGGGCGGGTGACATGCAAATC
AGCCTGTGTCTGAGAAAACACGGGGTACTGATGATGAAACGCAACAGAAA
CACGAACGGTAAGCATGGTATCAGTGGAACATCGGTATACGAAAAGCATT
TCACACCGTTTTCAGCCAGCAAGTCGATGTCCGACAAGCGGTACTCGAAG
CATTGGAAAAGCCTCGAGTTGCCGCTGACGTTCCACAAGATGGGGGAGAC
GGAGATGGGGGTGATGAGCGAGTTTGAAGTGTTAGCGGCGGCGACAAATA
CTAGCGTGCACTACAGCGGGCTGCGCAAGCATTTGTTGAGCAACGGCATT
CTGCCGGACCACTCGGCGCACGCGCGAGAGTCCAAACAGTTCTCTGCCGA
GTTTTTGCCGCAGCACTTGAAACGATAA