Gchil10469.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10469.t1
Unique NameGchil10469.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:94253..94571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09586T0
Preferred nameCMC2
PFAMsCmc1
Max annot lvl33154|Opisthokonta
KEGG koko:K18172
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue9.02e-18
EggNOG OGsKOG4148@1|root,KOG4148@2759|Eukaryota,3A89A@33154|Opisthokonta
DescriptionCOX assembly mitochondrial protein
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10469Gchil10469Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 94253..94571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10469.t1Gchil10469.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 94253..94571 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10469.t1.start1Gchil10469.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 94253..94255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10469.t1.CDS1Gchil10469.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 94253..94288 +
Gchil10469.t1.CDS2Gchil10469.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 94365..94571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10469.t1.exon1Gchil10469.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 94253..94288 +
Gchil10469.t1.exon2Gchil10469.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 94365..94571 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10469.t1.intron1Gchil10469.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 94289..94364 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10469.t1.stop1Gchil10469.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 94569..94571 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10469.t1 ID=Gchil10469.t1|Name=Gchil10469.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=81bp
MHPTLAPHLHPMCQEAIRNLKQCHSERRFAKFLGACNDAKAALDKCLSQE
YLVKRELNAAKAKVEKDRLRRILEEEKQFH*
back to top

spliced messenger RNA

>Gchil10469.t1 ID=Gchil10469.t1|Name=Gchil10469.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp|location=Sequence derived from alignment at tig00000159_pilon:94253..94571+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCCACTCTTGCTCCACACCTACACCCCATGTGTCAAGAAGCAAT
CCGGAATCTGAAACAATGCCATTCGGAGCGTCGCTTTGCGAAGTTCCTGG
GCGCCTGCAACGATGCAAAAGCGGCCCTCGATAAGTGCTTATCACAGGAA
TACCTCGTTAAACGAGAGCTCAATGCGGCAAAGGCGAAGGTGGAGAAAGA
TCGTCTTCGTCGAATCTTGGAGGAAGAAAAGCAGTTTCACTAA
back to top

protein sequence of Gchil10469.t1

>Gchil10469.t1 ID=Gchil10469.t1|Name=Gchil10469.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=81bp
MHPTLAPHLHPMCQEAIRNLKQCHSERRFAKFLGACNDAKAALDKCLSQE
YLVKRELNAAKAKVEKDRLRRILEEEKQFH*
back to top

mRNA from alignment at tig00000159_pilon:94253..94571+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10469.t1 ID=Gchil10469.t1|Name=Gchil10469.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp|location=Sequence derived from alignment at tig00000159_pilon:94253..94571+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCCCACTCTTGCTCCACACCTACACCCCATGGTACGCTCGAGCAC
CCCTATAAATATTTTAACCGACGTCGAGAACGTCCGAAAGCTCCTCTGAC
ACATGCAAGCAGTGTCAAGAAGCAATCCGGAATCTGAAACAATGCCATTC
GGAGCGTCGCTTTGCGAAGTTCCTGGGCGCCTGCAACGATGCAAAAGCGG
CCCTCGATAAGTGCTTATCACAGGAATACCTCGTTAAACGAGAGCTCAAT
GCGGCAAAGGCGAAGGTGGAGAAAGATCGTCTTCGTCGAATCTTGGAGGA
AGAAAAGCAGTTTCACTAA
back to top

Coding sequence (CDS) from alignment at tig00000159_pilon:94253..94571+

>Gchil10469.t1 ID=Gchil10469.t1|Name=Gchil10469.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=243bp|location=Sequence derived from alignment at tig00000159_pilon:94253..94571+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCCCACTCTTGCTCCACACCTACACCCCATGTGTCAAGAAGCAAT
CCGGAATCTGAAACAATGCCATTCGGAGCGTCGCTTTGCGAAGTTCCTGG
GCGCCTGCAACGATGCAAAAGCGGCCCTCGATAAGTGCTTATCACAGGAA
TACCTCGTTAAACGAGAGCTCAATGCGGCAAAGGCGAAGGTGGAGAAAGA
TCGTCTTCGTCGAATCTTGGAGGAAGAAAAGCAGTTTCACTAA
back to top