Gchil10465.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10465.t1
Unique NameGchil10465.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:50606..51924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_02408T0
PFAMsGelsolin
Max annot lvl2759|Eukaryota
KEGG koko:K05768
KEGG Pathwayko04666,ko04810,ko05203,map04666,map04810,map05203
Evalue2.35e-68
EggNOG OGsKOG0443@1|root,KOG0443@2759|Eukaryota
Descriptionactin filament capping
COG categoryS
BRITEko00000,ko00001,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10465Gchil10465Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 50606..51924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10465.t1Gchil10465.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 50606..51924 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10465.t1.start1Gchil10465.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 50606..50608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10465.t1.CDS1Gchil10465.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 50606..51174 +
Gchil10465.t1.CDS2Gchil10465.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 51249..51924 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10465.t1.exon1Gchil10465.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 50606..51174 +
Gchil10465.t1.exon2Gchil10465.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 51249..51924 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10465.t1.intron1Gchil10465.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000159_pilon 51175..51248 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10465.t1.stop1Gchil10465.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 51922..51924 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10465.t1 ID=Gchil10465.t1|Name=Gchil10465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=415bp
MLGFGKKAFAFYSKLTANEQSAPSPRSVDPAKVLSSMSSAVEGDNKWKLT
NIAGIGSEDDKVLRETAAESEAQFDGAGSSPGLEIWRIEKFTPQKQQLLA
ENLSLYSGDAYIVLKTTELESGQYEWHLHYWIGKDATQDESGSAAYFTVN
IDDMLQQKPIQHRELQYTETKLFHSYFGSVTYLDGGIDSGFKKVQPEEYK
PRLLRMTGIGQSIRVLQVPLDSSSLNNGDVFILDNGLTVYQFNSPNANHN
ERRRAMEIVQQDIKMQRDGEPELIILDGDEIFECDAFWDLLAGDKLSELP
EPDTFDDDDSEDINFSAPKKLFKISDESGSLVLSLEKEADTLSESDVDDD
DIWAVACDGKCFIYVGERTNKDEKFYVWNSCSNILLAAGLDEDAQTTFFS
KESDSAVWKQLFNC*
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spliced messenger RNA

>Gchil10465.t1 ID=Gchil10465.t1|Name=Gchil10465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000159_pilon:50606..51924+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGGTTTGGCAAGAAAGCCTTCGCCTTCTACTCAAAGCTCACGGC
CAATGAACAGTCTGCCCCCTCGCCCCGCTCCGTCGATCCGGCCAAGGTGC
TCTCGTCCATGTCATCGGCCGTCGAAGGCGACAACAAGTGGAAACTCACT
AACATTGCCGGCATAGGCTCTGAAGATGACAAGGTCCTGCGCGAAACCGC
CGCCGAGTCCGAGGCACAGTTCGACGGAGCCGGATCGTCGCCTGGGCTCG
AGATCTGGCGCATCGAAAAGTTCACCCCGCAGAAGCAGCAGCTGCTCGCC
GAAAACCTGTCTTTGTACAGCGGCGATGCGTACATTGTGCTAAAGACCAC
CGAGTTGGAAAGCGGTCAGTATGAATGGCATTTGCACTATTGGATCGGAA
AGGATGCCACTCAGGATGAAAGTGGTTCTGCCGCGTATTTCACTGTCAAC
ATTGATGACATGTTGCAGCAGAAGCCCATCCAACACCGCGAGCTGCAGTA
CACTGAGACAAAGCTGTTTCATTCGTATTTCGGCTCCGTCACTTACCTGG
ACGGGGGCATTGACAGCGGTTTCAAAAAGGTCCAGCCTGAAGAGTATAAA
CCACGTCTGTTGCGCATGACTGGCATTGGACAGAGCATCCGCGTGTTGCA
GGTACCGCTCGACTCGTCTTCTCTCAACAATGGTGACGTGTTTATTCTGG
ACAATGGATTGACTGTGTATCAGTTTAACTCGCCCAATGCCAATCACAAC
GAGCGCCGTCGTGCCATGGAAATCGTGCAGCAGGACATCAAGATGCAGCG
CGACGGCGAGCCGGAGCTCATCATCCTGGACGGCGATGAGATATTTGAGT
GTGATGCGTTTTGGGACCTGCTCGCTGGTGACAAGCTGTCAGAGCTCCCG
GAACCTGACACCTTCGATGACGATGACAGCGAAGACATAAATTTCTCCGC
GCCCAAGAAACTGTTTAAGATTTCGGACGAGAGCGGCTCGTTAGTGCTGT
CACTTGAGAAAGAGGCGGACACGCTTTCCGAGAGTGACGTTGATGACGAT
GACATTTGGGCTGTTGCTTGTGACGGTAAATGTTTCATCTATGTCGGCGA
GCGTACAAACAAGGATGAAAAATTCTATGTGTGGAATAGTTGTTCAAACA
TACTGCTGGCTGCAGGGCTTGACGAAGACGCGCAGACCACCTTCTTCTCA
AAAGAATCCGACAGTGCTGTGTGGAAGCAGCTTTTCAATTGTTAA
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protein sequence of Gchil10465.t1

>Gchil10465.t1 ID=Gchil10465.t1|Name=Gchil10465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=415bp
MLGFGKKAFAFYSKLTANEQSAPSPRSVDPAKVLSSMSSAVEGDNKWKLT
NIAGIGSEDDKVLRETAAESEAQFDGAGSSPGLEIWRIEKFTPQKQQLLA
ENLSLYSGDAYIVLKTTELESGQYEWHLHYWIGKDATQDESGSAAYFTVN
IDDMLQQKPIQHRELQYTETKLFHSYFGSVTYLDGGIDSGFKKVQPEEYK
PRLLRMTGIGQSIRVLQVPLDSSSLNNGDVFILDNGLTVYQFNSPNANHN
ERRRAMEIVQQDIKMQRDGEPELIILDGDEIFECDAFWDLLAGDKLSELP
EPDTFDDDDSEDINFSAPKKLFKISDESGSLVLSLEKEADTLSESDVDDD
DIWAVACDGKCFIYVGERTNKDEKFYVWNSCSNILLAAGLDEDAQTTFFS
KESDSAVWKQLFNC*
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mRNA from alignment at tig00000159_pilon:50606..51924+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10465.t1 ID=Gchil10465.t1|Name=Gchil10465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1319bp|location=Sequence derived from alignment at tig00000159_pilon:50606..51924+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGGGTTTGGCAAGAAAGCCTTCGCCTTCTACTCAAAGCTCACGGC
CAATGAACAGTCTGCCCCCTCGCCCCGCTCCGTCGATCCGGCCAAGGTGC
TCTCGTCCATGTCATCGGCCGTCGAAGGCGACAACAAGTGGAAACTCACT
AACATTGCCGGCATAGGCTCTGAAGATGACAAGGTCCTGCGCGAAACCGC
CGCCGAGTCCGAGGCACAGTTCGACGGAGCCGGATCGTCGCCTGGGCTCG
AGATCTGGCGCATCGAAAAGTTCACCCCGCAGAAGCAGCAGCTGCTCGCC
GAAAACCTGTCTTTGTACAGCGGCGATGCGTACATTGTGCTAAAGACCAC
CGAGTTGGAAAGCGGTCAGTATGAATGGCATTTGCACTATTGGATCGGAA
AGGATGCCACTCAGGATGAAAGTGGTTCTGCCGCGTATTTCACTGTCAAC
ATTGATGACATGTTGCAGCAGAAGCCCATCCAACACCGCGAGCTGCAGTA
CACTGAGACAAAGCTGTTTCATTCGTATTTCGGCTCCGTCACTTACCTGG
ACGGGGGCATTGACAGCGGGTAGGTCACACGCTTTTCTTTTTCTTGTCCT
CATCATCCAAGTTTGCTGACACTATCATCTGTTGTTGCTGCAGTTTCAAA
AAGGTCCAGCCTGAAGAGTATAAACCACGTCTGTTGCGCATGACTGGCAT
TGGACAGAGCATCCGCGTGTTGCAGGTACCGCTCGACTCGTCTTCTCTCA
ACAATGGTGACGTGTTTATTCTGGACAATGGATTGACTGTGTATCAGTTT
AACTCGCCCAATGCCAATCACAACGAGCGCCGTCGTGCCATGGAAATCGT
GCAGCAGGACATCAAGATGCAGCGCGACGGCGAGCCGGAGCTCATCATCC
TGGACGGCGATGAGATATTTGAGTGTGATGCGTTTTGGGACCTGCTCGCT
GGTGACAAGCTGTCAGAGCTCCCGGAACCTGACACCTTCGATGACGATGA
CAGCGAAGACATAAATTTCTCCGCGCCCAAGAAACTGTTTAAGATTTCGG
ACGAGAGCGGCTCGTTAGTGCTGTCACTTGAGAAAGAGGCGGACACGCTT
TCCGAGAGTGACGTTGATGACGATGACATTTGGGCTGTTGCTTGTGACGG
TAAATGTTTCATCTATGTCGGCGAGCGTACAAACAAGGATGAAAAATTCT
ATGTGTGGAATAGTTGTTCAAACATACTGCTGGCTGCAGGGCTTGACGAA
GACGCGCAGACCACCTTCTTCTCAAAAGAATCCGACAGTGCTGTGTGGAA
GCAGCTTTTCAATTGTTAA
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Coding sequence (CDS) from alignment at tig00000159_pilon:50606..51924+

>Gchil10465.t1 ID=Gchil10465.t1|Name=Gchil10465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00000159_pilon:50606..51924+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGGGTTTGGCAAGAAAGCCTTCGCCTTCTACTCAAAGCTCACGGC
CAATGAACAGTCTGCCCCCTCGCCCCGCTCCGTCGATCCGGCCAAGGTGC
TCTCGTCCATGTCATCGGCCGTCGAAGGCGACAACAAGTGGAAACTCACT
AACATTGCCGGCATAGGCTCTGAAGATGACAAGGTCCTGCGCGAAACCGC
CGCCGAGTCCGAGGCACAGTTCGACGGAGCCGGATCGTCGCCTGGGCTCG
AGATCTGGCGCATCGAAAAGTTCACCCCGCAGAAGCAGCAGCTGCTCGCC
GAAAACCTGTCTTTGTACAGCGGCGATGCGTACATTGTGCTAAAGACCAC
CGAGTTGGAAAGCGGTCAGTATGAATGGCATTTGCACTATTGGATCGGAA
AGGATGCCACTCAGGATGAAAGTGGTTCTGCCGCGTATTTCACTGTCAAC
ATTGATGACATGTTGCAGCAGAAGCCCATCCAACACCGCGAGCTGCAGTA
CACTGAGACAAAGCTGTTTCATTCGTATTTCGGCTCCGTCACTTACCTGG
ACGGGGGCATTGACAGCGGTTTCAAAAAGGTCCAGCCTGAAGAGTATAAA
CCACGTCTGTTGCGCATGACTGGCATTGGACAGAGCATCCGCGTGTTGCA
GGTACCGCTCGACTCGTCTTCTCTCAACAATGGTGACGTGTTTATTCTGG
ACAATGGATTGACTGTGTATCAGTTTAACTCGCCCAATGCCAATCACAAC
GAGCGCCGTCGTGCCATGGAAATCGTGCAGCAGGACATCAAGATGCAGCG
CGACGGCGAGCCGGAGCTCATCATCCTGGACGGCGATGAGATATTTGAGT
GTGATGCGTTTTGGGACCTGCTCGCTGGTGACAAGCTGTCAGAGCTCCCG
GAACCTGACACCTTCGATGACGATGACAGCGAAGACATAAATTTCTCCGC
GCCCAAGAAACTGTTTAAGATTTCGGACGAGAGCGGCTCGTTAGTGCTGT
CACTTGAGAAAGAGGCGGACACGCTTTCCGAGAGTGACGTTGATGACGAT
GACATTTGGGCTGTTGCTTGTGACGGTAAATGTTTCATCTATGTCGGCGA
GCGTACAAACAAGGATGAAAAATTCTATGTGTGGAATAGTTGTTCAAACA
TACTGCTGGCTGCAGGGCTTGACGAAGACGCGCAGACCACCTTCTTCTCA
AAAGAATCCGACAGTGCTGTGTGGAAGCAGCTTTTCAATTGTTAA
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