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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 3067.XP_002946011.1 |
PFAMs | Peptidase_C1 |
Max annot lvl | 2759|Eukaryota |
Evalue | 2.81e-21 |
EggNOG OGs | COG4870@1|root,2S8PN@2759|Eukaryota |
Description | Belongs to the peptidase C1 family |
COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil1046.t1 ID=Gchil1046.t1|Name=Gchil1046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=232bp MVLVSTCASSLPHPIIDLPIVDIHESTLVVPLVRQQQEEVVFAVNSSSTG FARTTSAGLTVQRGTSGVLTFNFMIDAVEAETLATLDQEFSSSLTVSESE EYSRTRESYRSGFGIPFLRWLGINLNNRQVTRDDMQRSFELRENYNTQSS IVQQTITNVQVQKLRISGKLTAFGTSFVPTTVFAFIRIARIQTQDGMTLT VVSQSGDNLVAADAGGNTVPSSGGSIDIVPL* back to topspliced messenger RNA >Gchil1046.t1 ID=Gchil1046.t1|Name=Gchil1046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000172_pilon:142046..142741- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTACTGGTATCCACGTGTGCCAGCAGCCTTCCGCACCCGATTATTGA TTTGCCCATCGTGGACATTCACGAGTCCACCTTGGTTGTGCCGCTTGTCC GCCAGCAGCAAGAGGAAGTCGTGTTTGCAGTCAACAGCTCCAGCACTGGA TTTGCTCGTACAACCTCGGCCGGCCTCACTGTGCAGCGAGGCACCAGCGG CGTGCTGACGTTCAACTTCATGATCGACGCCGTGGAGGCCGAAACACTGG CCACCCTGGACCAAGAGTTCTCCAGTTCTCTCACTGTGTCGGAGAGCGAG GAGTACAGCCGAACCCGAGAGAGCTACCGAAGCGGATTCGGTATCCCGTT CTTGCGCTGGCTCGGAATCAACCTGAACAACCGCCAGGTCACTCGTGATG ACATGCAGAGATCTTTTGAGCTGCGCGAGAACTACAACACGCAGTCCAGC ATCGTGCAGCAGACCATTACCAACGTTCAGGTTCAGAAACTGCGGATCTC CGGCAAGCTCACCGCGTTTGGCACGAGCTTTGTTCCCACCACTGTGTTTG CATTTATCCGCATTGCTCGCATTCAGACTCAGGACGGCATGACGCTCACC GTTGTGTCGCAAAGCGGCGACAACCTGGTTGCCGCCGACGCGGGTGGAAA CACGGTGCCCTCTTCTGGCGGCTCCATCGATATAGTCCCTCTCTAG back to topprotein sequence of Gchil1046.t1 >Gchil1046.t1 ID=Gchil1046.t1|Name=Gchil1046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=232bp
MVLVSTCASSLPHPIIDLPIVDIHESTLVVPLVRQQQEEVVFAVNSSSTG FARTTSAGLTVQRGTSGVLTFNFMIDAVEAETLATLDQEFSSSLTVSESE EYSRTRESYRSGFGIPFLRWLGINLNNRQVTRDDMQRSFELRENYNTQSS IVQQTITNVQVQKLRISGKLTAFGTSFVPTTVFAFIRIARIQTQDGMTLT VVSQSGDNLVAADAGGNTVPSSGGSIDIVPL* back to topmRNA from alignment at tig00000172_pilon:142046..142741- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil1046.t1 ID=Gchil1046.t1|Name=Gchil1046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000172_pilon:142046..142741- (Gracilaria chilensis NLEC103_M9 male) ATGGTACTGGTATCCACGTGTGCCAGCAGCCTTCCGCACCCGATTATTGA
TTTGCCCATCGTGGACATTCACGAGTCCACCTTGGTTGTGCCGCTTGTCC
GCCAGCAGCAAGAGGAAGTCGTGTTTGCAGTCAACAGCTCCAGCACTGGA
TTTGCTCGTACAACCTCGGCCGGCCTCACTGTGCAGCGAGGCACCAGCGG
CGTGCTGACGTTCAACTTCATGATCGACGCCGTGGAGGCCGAAACACTGG
CCACCCTGGACCAAGAGTTCTCCAGTTCTCTCACTGTGTCGGAGAGCGAG
GAGTACAGCCGAACCCGAGAGAGCTACCGAAGCGGATTCGGTATCCCGTT
CTTGCGCTGGCTCGGAATCAACCTGAACAACCGCCAGGTCACTCGTGATG
ACATGCAGAGATCTTTTGAGCTGCGCGAGAACTACAACACGCAGTCCAGC
ATCGTGCAGCAGACCATTACCAACGTTCAGGTTCAGAAACTGCGGATCTC
CGGCAAGCTCACCGCGTTTGGCACGAGCTTTGTTCCCACCACTGTGTTTG
CATTTATCCGCATTGCTCGCATTCAGACTCAGGACGGCATGACGCTCACC
GTTGTGTCGCAAAGCGGCGACAACCTGGTTGCCGCCGACGCGGGTGGAAA
CACGGTGCCCTCTTCTGGCGGCTCCATCGATATAGTCCCTCTCTAG back to topCoding sequence (CDS) from alignment at tig00000172_pilon:142046..142741- >Gchil1046.t1 ID=Gchil1046.t1|Name=Gchil1046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000172_pilon:142046..142741- (Gracilaria chilensis NLEC103_M9 male) ATGGTACTGGTATCCACGTGTGCCAGCAGCCTTCCGCACCCGATTATTGA TTTGCCCATCGTGGACATTCACGAGTCCACCTTGGTTGTGCCGCTTGTCC GCCAGCAGCAAGAGGAAGTCGTGTTTGCAGTCAACAGCTCCAGCACTGGA TTTGCTCGTACAACCTCGGCCGGCCTCACTGTGCAGCGAGGCACCAGCGG CGTGCTGACGTTCAACTTCATGATCGACGCCGTGGAGGCCGAAACACTGG CCACCCTGGACCAAGAGTTCTCCAGTTCTCTCACTGTGTCGGAGAGCGAG GAGTACAGCCGAACCCGAGAGAGCTACCGAAGCGGATTCGGTATCCCGTT CTTGCGCTGGCTCGGAATCAACCTGAACAACCGCCAGGTCACTCGTGATG ACATGCAGAGATCTTTTGAGCTGCGCGAGAACTACAACACGCAGTCCAGC ATCGTGCAGCAGACCATTACCAACGTTCAGGTTCAGAAACTGCGGATCTC CGGCAAGCTCACCGCGTTTGGCACGAGCTTTGTTCCCACCACTGTGTTTG CATTTATCCGCATTGCTCGCATTCAGACTCAGGACGGCATGACGCTCACC GTTGTGTCGCAAAGCGGCGACAACCTGGTTGCCGCCGACGCGGGTGGAAA CACGGTGCCCTCTTCTGGCGGCTCCATCGATATAGTCCCTCTCTAG back to top
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