Gchil1041.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1041.t1
Unique NameGchil1041.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:65859..67007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_07135T0
PFAMsXan_ur_permease
Max annot lvl4751|Fungi
KEGG koko:K03458
KEGG TC2.A.40
GOsGO:0000322,GO:0000323,GO:0000324,GO:0002054,GO:0002060,GO:0003674,GO:0005215,GO:0005345,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005775,GO:0005776,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006863,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0010008,GO:0012505,GO:0015075,GO:0015143,GO:0015205,GO:0015711,GO:0015747,GO:0015851,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031974,GO:0031982,GO:0034220,GO:0034423,GO:0036094,GO:0042906,GO:0042907,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0070013,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0097159,GO:0097708,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:1901363,GO:1901702,GO:1904823
Evalue6.36e-68
EggNOG OGsCOG2233@1|root,2QQD4@2759|Eukaryota,39J71@33154|Opisthokonta,3NWNX@4751|Fungi,1GSDI@112252|Fungi incertae sedis
DescriptionPermease family
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1041Gchil1041Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 65859..67007 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1041.t1.stop1Gchil1041.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 65859..65861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1041.t1.CDS1Gchil1041.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 65859..67007 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1041.t1.exon1Gchil1041.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 65859..67007 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1041.t1.start1Gchil1041.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 67005..67007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1041.t1Gchil1041.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 65859..67007 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1041.t1 ID=Gchil1041.t1|Name=Gchil1041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp
MPPALLRLLFPPVVTGCTVLILGAQLTRVGLGYWGGGAAAEAAHTFGAAR
WVALGALPFFVVLALEVVGSPFLRSAHVLLALAVGAVAAAALGEVDAAVV
RHAPALLPPLARRFPLRVWPPALLPVAIAFVVSAVETAADVSATCELSRV
PTTGPAFASRIQRALAADALGSVLAALLTCSATVTFSQNNAVIALSRDAS
RRSAFCAALTLIALGVLGKVGALLAALPDPVLGGVATFLFGGVAAAGVRI
LARVSWRRRASFIVTAALALGFGVEMRPTALSSFLPHHHPRPAVDALRQA
AHLVLSTGYAVGALTAALLNALLPPDAPARKPPTAHRTPDPDPDPDPDND
NDPIPEPEPEPAPASDPERPAERPPPLGLSCS*
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spliced messenger RNA

>Gchil1041.t1 ID=Gchil1041.t1|Name=Gchil1041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000172_pilon:65859..67007- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCGCTGCTGCGCCTCCTCTTCCCGCCCGTCGTCACCGGCTG
CACCGTGCTCATCCTCGGCGCGCAGCTCACGCGCGTCGGGCTCGGCTACT
GGGGCGGCGGCGCCGCCGCCGAGGCCGCCCACACCTTCGGCGCCGCGCGT
TGGGTCGCGCTCGGCGCCCTGCCCTTCTTCGTCGTGCTGGCGCTCGAGGT
CGTCGGCTCCCCGTTTCTGCGTTCGGCGCACGTGCTGCTGGCGTTGGCCG
TCGGCGCCGTTGCCGCCGCCGCCCTCGGCGAGGTGGACGCCGCCGTCGTG
CGCCACGCCCCCGCCCTGCTGCCGCCGCTGGCGCGCCGCTTCCCGTTGCG
CGTGTGGCCGCCCGCCTTGCTGCCCGTCGCCATCGCCTTCGTCGTGTCGG
CCGTCGAGACTGCCGCCGACGTGAGCGCCACCTGCGAGCTGTCGCGCGTG
CCCACCACGGGACCCGCCTTCGCCTCCCGCATCCAGCGCGCCCTTGCTGC
CGACGCCCTCGGCTCCGTGTTGGCCGCCCTTCTCACCTGCTCCGCCACCG
TCACCTTCTCGCAGAACAACGCCGTCATTGCCCTGTCGCGCGACGCCTCG
CGACGCTCCGCCTTCTGCGCCGCCCTCACCCTCATCGCCCTGGGCGTCCT
GGGCAAGGTGGGCGCCCTTCTGGCCGCCCTGCCGGACCCCGTACTCGGCG
GCGTCGCCACGTTCCTGTTCGGCGGCGTCGCCGCCGCCGGCGTCCGCATT
CTGGCCCGTGTGTCGTGGCGTCGTCGCGCCTCCTTCATTGTCACCGCCGC
CCTTGCGCTCGGCTTCGGCGTCGAGATGAGGCCCACCGCCCTGTCGTCCT
TCTTGCCGCACCACCACCCACGCCCCGCCGTCGACGCGCTGCGACAGGCT
GCCCACCTCGTCCTGTCCACGGGCTACGCCGTCGGCGCCCTCACCGCCGC
CCTGCTCAACGCGCTGCTGCCGCCCGACGCCCCCGCCCGCAAGCCCCCAA
CCGCTCACCGCACCCCCGACCCCGACCCCGACCCCGACCCCGACAACGAC
AACGACCCCATCCCCGAGCCCGAGCCCGAGCCCGCGCCCGCCTCGGACCC
CGAGCGCCCCGCCGAGCGCCCCCCGCCACTTGGCCTCTCTTGTTCCTAA
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protein sequence of Gchil1041.t1

>Gchil1041.t1 ID=Gchil1041.t1|Name=Gchil1041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=383bp
MPPALLRLLFPPVVTGCTVLILGAQLTRVGLGYWGGGAAAEAAHTFGAAR
WVALGALPFFVVLALEVVGSPFLRSAHVLLALAVGAVAAAALGEVDAAVV
RHAPALLPPLARRFPLRVWPPALLPVAIAFVVSAVETAADVSATCELSRV
PTTGPAFASRIQRALAADALGSVLAALLTCSATVTFSQNNAVIALSRDAS
RRSAFCAALTLIALGVLGKVGALLAALPDPVLGGVATFLFGGVAAAGVRI
LARVSWRRRASFIVTAALALGFGVEMRPTALSSFLPHHHPRPAVDALRQA
AHLVLSTGYAVGALTAALLNALLPPDAPARKPPTAHRTPDPDPDPDPDND
NDPIPEPEPEPAPASDPERPAERPPPLGLSCS*
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mRNA from alignment at tig00000172_pilon:65859..67007-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1041.t1 ID=Gchil1041.t1|Name=Gchil1041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000172_pilon:65859..67007- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCGCGCTGCTGCGCCTCCTCTTCCCGCCCGTCGTCACCGGCTG
CACCGTGCTCATCCTCGGCGCGCAGCTCACGCGCGTCGGGCTCGGCTACT
GGGGCGGCGGCGCCGCCGCCGAGGCCGCCCACACCTTCGGCGCCGCGCGT
TGGGTCGCGCTCGGCGCCCTGCCCTTCTTCGTCGTGCTGGCGCTCGAGGT
CGTCGGCTCCCCGTTTCTGCGTTCGGCGCACGTGCTGCTGGCGTTGGCCG
TCGGCGCCGTTGCCGCCGCCGCCCTCGGCGAGGTGGACGCCGCCGTCGTG
CGCCACGCCCCCGCCCTGCTGCCGCCGCTGGCGCGCCGCTTCCCGTTGCG
CGTGTGGCCGCCCGCCTTGCTGCCCGTCGCCATCGCCTTCGTCGTGTCGG
CCGTCGAGACTGCCGCCGACGTGAGCGCCACCTGCGAGCTGTCGCGCGTG
CCCACCACGGGACCCGCCTTCGCCTCCCGCATCCAGCGCGCCCTTGCTGC
CGACGCCCTCGGCTCCGTGTTGGCCGCCCTTCTCACCTGCTCCGCCACCG
TCACCTTCTCGCAGAACAACGCCGTCATTGCCCTGTCGCGCGACGCCTCG
CGACGCTCCGCCTTCTGCGCCGCCCTCACCCTCATCGCCCTGGGCGTCCT
GGGCAAGGTGGGCGCCCTTCTGGCCGCCCTGCCGGACCCCGTACTCGGCG
GCGTCGCCACGTTCCTGTTCGGCGGCGTCGCCGCCGCCGGCGTCCGCATT
CTGGCCCGTGTGTCGTGGCGTCGTCGCGCCTCCTTCATTGTCACCGCCGC
CCTTGCGCTCGGCTTCGGCGTCGAGATGAGGCCCACCGCCCTGTCGTCCT
TCTTGCCGCACCACCACCCACGCCCCGCCGTCGACGCGCTGCGACAGGCT
GCCCACCTCGTCCTGTCCACGGGCTACGCCGTCGGCGCCCTCACCGCCGC
CCTGCTCAACGCGCTGCTGCCGCCCGACGCCCCCGCCCGCAAGCCCCCAA
CCGCTCACCGCACCCCCGACCCCGACCCCGACCCCGACCCCGACAACGAC
AACGACCCCATCCCCGAGCCCGAGCCCGAGCCCGCGCCCGCCTCGGACCC
CGAGCGCCCCGCCGAGCGCCCCCCGCCACTTGGCCTCTCTTGTTCCTAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:65859..67007-

>Gchil1041.t1 ID=Gchil1041.t1|Name=Gchil1041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000172_pilon:65859..67007- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCGCGCTGCTGCGCCTCCTCTTCCCGCCCGTCGTCACCGGCTG
CACCGTGCTCATCCTCGGCGCGCAGCTCACGCGCGTCGGGCTCGGCTACT
GGGGCGGCGGCGCCGCCGCCGAGGCCGCCCACACCTTCGGCGCCGCGCGT
TGGGTCGCGCTCGGCGCCCTGCCCTTCTTCGTCGTGCTGGCGCTCGAGGT
CGTCGGCTCCCCGTTTCTGCGTTCGGCGCACGTGCTGCTGGCGTTGGCCG
TCGGCGCCGTTGCCGCCGCCGCCCTCGGCGAGGTGGACGCCGCCGTCGTG
CGCCACGCCCCCGCCCTGCTGCCGCCGCTGGCGCGCCGCTTCCCGTTGCG
CGTGTGGCCGCCCGCCTTGCTGCCCGTCGCCATCGCCTTCGTCGTGTCGG
CCGTCGAGACTGCCGCCGACGTGAGCGCCACCTGCGAGCTGTCGCGCGTG
CCCACCACGGGACCCGCCTTCGCCTCCCGCATCCAGCGCGCCCTTGCTGC
CGACGCCCTCGGCTCCGTGTTGGCCGCCCTTCTCACCTGCTCCGCCACCG
TCACCTTCTCGCAGAACAACGCCGTCATTGCCCTGTCGCGCGACGCCTCG
CGACGCTCCGCCTTCTGCGCCGCCCTCACCCTCATCGCCCTGGGCGTCCT
GGGCAAGGTGGGCGCCCTTCTGGCCGCCCTGCCGGACCCCGTACTCGGCG
GCGTCGCCACGTTCCTGTTCGGCGGCGTCGCCGCCGCCGGCGTCCGCATT
CTGGCCCGTGTGTCGTGGCGTCGTCGCGCCTCCTTCATTGTCACCGCCGC
CCTTGCGCTCGGCTTCGGCGTCGAGATGAGGCCCACCGCCCTGTCGTCCT
TCTTGCCGCACCACCACCCACGCCCCGCCGTCGACGCGCTGCGACAGGCT
GCCCACCTCGTCCTGTCCACGGGCTACGCCGTCGGCGCCCTCACCGCCGC
CCTGCTCAACGCGCTGCTGCCGCCCGACGCCCCCGCCCGCAAGCCCCCAA
CCGCTCACCGCACCCCCGACCCCGACCCCGACCCCGACCCCGACAACGAC
AACGACCCCATCCCCGAGCCCGAGCCCGAGCCCGCGCCCGCCTCGGACCC
CGAGCGCCCCGCCGAGCGCCCCCCGCCACTTGGCCTCTCTTGTTCCTAA
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