Gchil1040.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1040.t1
Unique NameGchil1040.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:22755..23540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1040Gchil1040Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 22755..23540 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1040.t1.start1Gchil1040.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 22755..22757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1040.t1.CDS1Gchil1040.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 22755..23540 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1040.t1.exon1Gchil1040.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 22755..23540 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1040.t1.stop1Gchil1040.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 23538..23540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1040.t1Gchil1040.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 22755..23540 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1040.t1 ID=Gchil1040.t1|Name=Gchil1040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=262bp
MRKLRNPIFQNKLHSDIVSSQCAVVKDGVLYQKAVNVTKDRGEVLVHCSK
DYIFSFRLSDYVTERKFPDIKPTMGCSSCSKIPEPENCPTFCAFVVVQNN
SVFYSGATSEKWALEKGSSGQAQKELTFLGTDVYFRAENLQREMAERAAQ
AFADSSTHPLSQRRRILMGSGERSCEFSVGEREGTDVPIAILVSLTGIWM
SSLFLGGASFVLRRRNSFDISDPLEWAFRSIEKPGAPIETDPAITVQCMD
EKKYFLLSEAV*
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spliced messenger RNA

>Gchil1040.t1 ID=Gchil1040.t1|Name=Gchil1040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000172_pilon:22755..23540+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAAATTGAGAAACCCCATTTTCCAGAATAAACTCCACAGTGATAT
TGTGAGCAGTCAGTGTGCTGTGGTGAAGGATGGTGTCTTGTATCAAAAGG
CTGTGAACGTGACGAAAGACCGTGGTGAAGTTCTCGTTCATTGCTCGAAA
GATTACATATTCTCTTTCAGGTTATCCGACTATGTGACTGAACGAAAGTT
TCCCGATATCAAACCAACCATGGGCTGTTCTTCGTGCTCAAAGATTCCTG
AACCAGAGAATTGCCCGACGTTCTGCGCATTTGTCGTGGTCCAGAACAAT
TCTGTATTCTACTCCGGCGCAACTTCAGAAAAATGGGCATTGGAGAAGGG
TTCTAGTGGCCAGGCACAGAAAGAACTGACATTTCTGGGTACAGACGTCT
ATTTCAGAGCCGAAAATCTGCAACGAGAAATGGCTGAAAGAGCGGCACAA
GCTTTTGCAGATTCTAGTACACATCCTCTCTCTCAAAGACGTAGAATTCT
AATGGGGTCAGGAGAACGATCTTGTGAATTCTCGGTGGGAGAAAGAGAAG
GAACTGATGTGCCCATCGCTATTCTTGTCTCTCTGACTGGGATTTGGATG
AGTTCTTTATTTCTGGGTGGCGCTTCGTTTGTGCTCCGAAGAAGAAATTC
GTTTGACATAAGTGATCCATTGGAATGGGCTTTTCGAAGCATTGAAAAGC
CTGGCGCTCCAATCGAGACCGATCCAGCAATTACAGTGCAATGCATGGAT
GAGAAAAAGTATTTCCTTTTATCGGAAGCTGTGTAG
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protein sequence of Gchil1040.t1

>Gchil1040.t1 ID=Gchil1040.t1|Name=Gchil1040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MRKLRNPIFQNKLHSDIVSSQCAVVKDGVLYQKAVNVTKDRGEVLVHCSK
DYIFSFRLSDYVTERKFPDIKPTMGCSSCSKIPEPENCPTFCAFVVVQNN
SVFYSGATSEKWALEKGSSGQAQKELTFLGTDVYFRAENLQREMAERAAQ
AFADSSTHPLSQRRRILMGSGERSCEFSVGEREGTDVPIAILVSLTGIWM
SSLFLGGASFVLRRRNSFDISDPLEWAFRSIEKPGAPIETDPAITVQCMD
EKKYFLLSEAV*
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mRNA from alignment at tig00000172_pilon:22755..23540+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1040.t1 ID=Gchil1040.t1|Name=Gchil1040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000172_pilon:22755..23540+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAAAATTGAGAAACCCCATTTTCCAGAATAAACTCCACAGTGATAT
TGTGAGCAGTCAGTGTGCTGTGGTGAAGGATGGTGTCTTGTATCAAAAGG
CTGTGAACGTGACGAAAGACCGTGGTGAAGTTCTCGTTCATTGCTCGAAA
GATTACATATTCTCTTTCAGGTTATCCGACTATGTGACTGAACGAAAGTT
TCCCGATATCAAACCAACCATGGGCTGTTCTTCGTGCTCAAAGATTCCTG
AACCAGAGAATTGCCCGACGTTCTGCGCATTTGTCGTGGTCCAGAACAAT
TCTGTATTCTACTCCGGCGCAACTTCAGAAAAATGGGCATTGGAGAAGGG
TTCTAGTGGCCAGGCACAGAAAGAACTGACATTTCTGGGTACAGACGTCT
ATTTCAGAGCCGAAAATCTGCAACGAGAAATGGCTGAAAGAGCGGCACAA
GCTTTTGCAGATTCTAGTACACATCCTCTCTCTCAAAGACGTAGAATTCT
AATGGGGTCAGGAGAACGATCTTGTGAATTCTCGGTGGGAGAAAGAGAAG
GAACTGATGTGCCCATCGCTATTCTTGTCTCTCTGACTGGGATTTGGATG
AGTTCTTTATTTCTGGGTGGCGCTTCGTTTGTGCTCCGAAGAAGAAATTC
GTTTGACATAAGTGATCCATTGGAATGGGCTTTTCGAAGCATTGAAAAGC
CTGGCGCTCCAATCGAGACCGATCCAGCAATTACAGTGCAATGCATGGAT
GAGAAAAAGTATTTCCTTTTATCGGAAGCTGTGTAG
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Coding sequence (CDS) from alignment at tig00000172_pilon:22755..23540+

>Gchil1040.t1 ID=Gchil1040.t1|Name=Gchil1040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000172_pilon:22755..23540+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAAAATTGAGAAACCCCATTTTCCAGAATAAACTCCACAGTGATAT
TGTGAGCAGTCAGTGTGCTGTGGTGAAGGATGGTGTCTTGTATCAAAAGG
CTGTGAACGTGACGAAAGACCGTGGTGAAGTTCTCGTTCATTGCTCGAAA
GATTACATATTCTCTTTCAGGTTATCCGACTATGTGACTGAACGAAAGTT
TCCCGATATCAAACCAACCATGGGCTGTTCTTCGTGCTCAAAGATTCCTG
AACCAGAGAATTGCCCGACGTTCTGCGCATTTGTCGTGGTCCAGAACAAT
TCTGTATTCTACTCCGGCGCAACTTCAGAAAAATGGGCATTGGAGAAGGG
TTCTAGTGGCCAGGCACAGAAAGAACTGACATTTCTGGGTACAGACGTCT
ATTTCAGAGCCGAAAATCTGCAACGAGAAATGGCTGAAAGAGCGGCACAA
GCTTTTGCAGATTCTAGTACACATCCTCTCTCTCAAAGACGTAGAATTCT
AATGGGGTCAGGAGAACGATCTTGTGAATTCTCGGTGGGAGAAAGAGAAG
GAACTGATGTGCCCATCGCTATTCTTGTCTCTCTGACTGGGATTTGGATG
AGTTCTTTATTTCTGGGTGGCGCTTCGTTTGTGCTCCGAAGAAGAAATTC
GTTTGACATAAGTGATCCATTGGAATGGGCTTTTCGAAGCATTGAAAAGC
CTGGCGCTCCAATCGAGACCGATCCAGCAATTACAGTGCAATGCATGGAT
GAGAAAAAGTATTTCCTTTTATCGGAAGCTGTGTAG
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