Gchil1039.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1039.t1
Unique NameGchil1039.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:14602..15906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1349785.BAUG01000025_gene1556
PFAMsLactonase,Peptidase_S9
Max annot lvl2|Bacteria
Evalue4.64e-45
EggNOG OGsCOG2706@1|root,COG2706@2|Bacteria
Description6-phosphogluconolactonase activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1039Gchil1039Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 14602..15906 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1039.t1.start1Gchil1039.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 14602..14604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1039.t1.CDS1Gchil1039.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 14602..15906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1039.t1.exon1Gchil1039.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 14602..15906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1039.t1.stop1Gchil1039.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 15904..15906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1039.t1Gchil1039.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 14602..15906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1039.t1 ID=Gchil1039.t1|Name=Gchil1039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MARTPFFVTALLATFLLSCVAAQETSFTLDSAIASRSPISREFVGGVYAM
SNNLTENTIVVYARRRNGTLQLLNPGVKTGGKGAIINFNMGFDPLFSAFS
VNITPDYKYILAVNAGSSSVSVFKILPDFSIRLVHVQPVPGFGPNSVAIS
GNLVYVASVDADGTFDDVPSQKGLLSGYRMCSTGKLEPIPRSQRLLSFRP
SAVKFSPDRRSLVVSDLFSGVNALSSGTLNEIVVFHVNKFGLLSRRPVTG
VTSTQLNNSEGRNLPSAIGFDIIRSRGVQYVVVPEVRALVGADGMSPADQ
AASVSTWRLDSSGRLFPVQLDVPVGSSVTSGQIDPCWIQFSADLRNFWIS
NTGSNSLSAFSFNKGVPALKIEVAATGPNPIDLWRSRDSRFLYQLFTGSI
AVFEISKGGRGVGLTQIQAPMDIPPMNAQGIVAF*
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spliced messenger RNA

>Gchil1039.t1 ID=Gchil1039.t1|Name=Gchil1039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000172_pilon:14602..15906+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGAACACCTTTCTTTGTCACTGCGTTGCTCGCAACTTTCTTGTT
ATCATGTGTAGCCGCACAGGAAACAAGTTTTACTCTCGATTCAGCCATTG
CCTCAAGATCCCCGATATCTCGTGAATTCGTGGGAGGTGTGTACGCCATG
TCCAATAACCTCACCGAAAATACAATTGTTGTTTACGCTCGTCGCAGAAA
CGGCACTTTGCAGTTGTTGAACCCGGGAGTCAAAACAGGGGGAAAAGGCG
CCATCATCAATTTTAATATGGGATTTGATCCGCTTTTCTCAGCTTTCTCC
GTCAATATCACCCCCGACTACAAATATATCCTTGCGGTCAATGCTGGCAG
TAGCTCCGTTTCTGTCTTCAAAATACTTCCCGACTTTTCTATCCGCCTTG
TCCATGTACAACCCGTTCCCGGCTTTGGGCCCAATTCCGTCGCTATATCA
GGGAATCTCGTCTACGTCGCCAGCGTTGATGCGGATGGAACATTTGATGA
TGTTCCCTCTCAGAAAGGACTTCTTTCGGGATACCGAATGTGTTCCACCG
GAAAGCTTGAGCCGATTCCGCGTAGTCAGCGATTACTCTCTTTCCGCCCA
TCTGCCGTGAAGTTCTCGCCCGACCGCCGTTCTTTGGTCGTCTCAGACTT
ATTCTCTGGCGTCAACGCTCTCAGCTCTGGTACCCTCAATGAAATTGTTG
TCTTCCATGTGAATAAGTTCGGGCTCCTTAGCCGCAGACCTGTCACTGGT
GTAACATCAACCCAACTGAATAATTCTGAGGGTCGAAATTTGCCGTCTGC
TATTGGCTTCGATATTATCAGGTCTCGGGGTGTGCAATATGTAGTTGTCC
CCGAAGTTCGTGCTTTGGTGGGTGCCGATGGCATGAGTCCAGCTGACCAA
GCTGCTTCTGTCTCTACATGGCGTCTTGACTCTTCTGGGCGTCTATTTCC
TGTACAGCTTGACGTCCCTGTCGGATCATCAGTGACTTCTGGACAGATTG
ACCCCTGCTGGATACAATTCTCCGCTGACTTGAGAAACTTCTGGATCTCC
AATACCGGCTCAAACTCTCTTTCAGCATTTTCGTTCAACAAAGGAGTCCC
CGCCCTCAAAATCGAAGTTGCTGCAACTGGACCCAATCCCATCGATTTAT
GGCGATCCCGAGACAGCAGGTTTTTGTACCAGTTGTTTACTGGATCTATC
GCGGTATTCGAGATCTCCAAGGGGGGGAGGGGTGTTGGTCTTACTCAGAT
TCAGGCTCCGATGGATATTCCTCCGATGAATGCTCAAGGAATCGTTGCGT
TTTAA
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protein sequence of Gchil1039.t1

>Gchil1039.t1 ID=Gchil1039.t1|Name=Gchil1039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MARTPFFVTALLATFLLSCVAAQETSFTLDSAIASRSPISREFVGGVYAM
SNNLTENTIVVYARRRNGTLQLLNPGVKTGGKGAIINFNMGFDPLFSAFS
VNITPDYKYILAVNAGSSSVSVFKILPDFSIRLVHVQPVPGFGPNSVAIS
GNLVYVASVDADGTFDDVPSQKGLLSGYRMCSTGKLEPIPRSQRLLSFRP
SAVKFSPDRRSLVVSDLFSGVNALSSGTLNEIVVFHVNKFGLLSRRPVTG
VTSTQLNNSEGRNLPSAIGFDIIRSRGVQYVVVPEVRALVGADGMSPADQ
AASVSTWRLDSSGRLFPVQLDVPVGSSVTSGQIDPCWIQFSADLRNFWIS
NTGSNSLSAFSFNKGVPALKIEVAATGPNPIDLWRSRDSRFLYQLFTGSI
AVFEISKGGRGVGLTQIQAPMDIPPMNAQGIVAF*
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mRNA from alignment at tig00000172_pilon:14602..15906+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1039.t1 ID=Gchil1039.t1|Name=Gchil1039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000172_pilon:14602..15906+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGAACACCTTTCTTTGTCACTGCGTTGCTCGCAACTTTCTTGTT
ATCATGTGTAGCCGCACAGGAAACAAGTTTTACTCTCGATTCAGCCATTG
CCTCAAGATCCCCGATATCTCGTGAATTCGTGGGAGGTGTGTACGCCATG
TCCAATAACCTCACCGAAAATACAATTGTTGTTTACGCTCGTCGCAGAAA
CGGCACTTTGCAGTTGTTGAACCCGGGAGTCAAAACAGGGGGAAAAGGCG
CCATCATCAATTTTAATATGGGATTTGATCCGCTTTTCTCAGCTTTCTCC
GTCAATATCACCCCCGACTACAAATATATCCTTGCGGTCAATGCTGGCAG
TAGCTCCGTTTCTGTCTTCAAAATACTTCCCGACTTTTCTATCCGCCTTG
TCCATGTACAACCCGTTCCCGGCTTTGGGCCCAATTCCGTCGCTATATCA
GGGAATCTCGTCTACGTCGCCAGCGTTGATGCGGATGGAACATTTGATGA
TGTTCCCTCTCAGAAAGGACTTCTTTCGGGATACCGAATGTGTTCCACCG
GAAAGCTTGAGCCGATTCCGCGTAGTCAGCGATTACTCTCTTTCCGCCCA
TCTGCCGTGAAGTTCTCGCCCGACCGCCGTTCTTTGGTCGTCTCAGACTT
ATTCTCTGGCGTCAACGCTCTCAGCTCTGGTACCCTCAATGAAATTGTTG
TCTTCCATGTGAATAAGTTCGGGCTCCTTAGCCGCAGACCTGTCACTGGT
GTAACATCAACCCAACTGAATAATTCTGAGGGTCGAAATTTGCCGTCTGC
TATTGGCTTCGATATTATCAGGTCTCGGGGTGTGCAATATGTAGTTGTCC
CCGAAGTTCGTGCTTTGGTGGGTGCCGATGGCATGAGTCCAGCTGACCAA
GCTGCTTCTGTCTCTACATGGCGTCTTGACTCTTCTGGGCGTCTATTTCC
TGTACAGCTTGACGTCCCTGTCGGATCATCAGTGACTTCTGGACAGATTG
ACCCCTGCTGGATACAATTCTCCGCTGACTTGAGAAACTTCTGGATCTCC
AATACCGGCTCAAACTCTCTTTCAGCATTTTCGTTCAACAAAGGAGTCCC
CGCCCTCAAAATCGAAGTTGCTGCAACTGGACCCAATCCCATCGATTTAT
GGCGATCCCGAGACAGCAGGTTTTTGTACCAGTTGTTTACTGGATCTATC
GCGGTATTCGAGATCTCCAAGGGGGGGAGGGGTGTTGGTCTTACTCAGAT
TCAGGCTCCGATGGATATTCCTCCGATGAATGCTCAAGGAATCGTTGCGT
TTTAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:14602..15906+

>Gchil1039.t1 ID=Gchil1039.t1|Name=Gchil1039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000172_pilon:14602..15906+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGAACACCTTTCTTTGTCACTGCGTTGCTCGCAACTTTCTTGTT
ATCATGTGTAGCCGCACAGGAAACAAGTTTTACTCTCGATTCAGCCATTG
CCTCAAGATCCCCGATATCTCGTGAATTCGTGGGAGGTGTGTACGCCATG
TCCAATAACCTCACCGAAAATACAATTGTTGTTTACGCTCGTCGCAGAAA
CGGCACTTTGCAGTTGTTGAACCCGGGAGTCAAAACAGGGGGAAAAGGCG
CCATCATCAATTTTAATATGGGATTTGATCCGCTTTTCTCAGCTTTCTCC
GTCAATATCACCCCCGACTACAAATATATCCTTGCGGTCAATGCTGGCAG
TAGCTCCGTTTCTGTCTTCAAAATACTTCCCGACTTTTCTATCCGCCTTG
TCCATGTACAACCCGTTCCCGGCTTTGGGCCCAATTCCGTCGCTATATCA
GGGAATCTCGTCTACGTCGCCAGCGTTGATGCGGATGGAACATTTGATGA
TGTTCCCTCTCAGAAAGGACTTCTTTCGGGATACCGAATGTGTTCCACCG
GAAAGCTTGAGCCGATTCCGCGTAGTCAGCGATTACTCTCTTTCCGCCCA
TCTGCCGTGAAGTTCTCGCCCGACCGCCGTTCTTTGGTCGTCTCAGACTT
ATTCTCTGGCGTCAACGCTCTCAGCTCTGGTACCCTCAATGAAATTGTTG
TCTTCCATGTGAATAAGTTCGGGCTCCTTAGCCGCAGACCTGTCACTGGT
GTAACATCAACCCAACTGAATAATTCTGAGGGTCGAAATTTGCCGTCTGC
TATTGGCTTCGATATTATCAGGTCTCGGGGTGTGCAATATGTAGTTGTCC
CCGAAGTTCGTGCTTTGGTGGGTGCCGATGGCATGAGTCCAGCTGACCAA
GCTGCTTCTGTCTCTACATGGCGTCTTGACTCTTCTGGGCGTCTATTTCC
TGTACAGCTTGACGTCCCTGTCGGATCATCAGTGACTTCTGGACAGATTG
ACCCCTGCTGGATACAATTCTCCGCTGACTTGAGAAACTTCTGGATCTCC
AATACCGGCTCAAACTCTCTTTCAGCATTTTCGTTCAACAAAGGAGTCCC
CGCCCTCAAAATCGAAGTTGCTGCAACTGGACCCAATCCCATCGATTTAT
GGCGATCCCGAGACAGCAGGTTTTTGTACCAGTTGTTTACTGGATCTATC
GCGGTATTCGAGATCTCCAAGGGGGGGAGGGGTGTTGGTCTTACTCAGAT
TCAGGCTCCGATGGATATTCCTCCGATGAATGCTCAAGGAATCGTTGCGT
TTTAA
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