Gchil10338.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10338.t1
Unique Name	Gchil10338.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	799

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000031_pilon	contig	tig00000031_pilon:302043..304439 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10338	Gchil10338	Gracilaria chilensis NLEC103_M9 male	gene	tig00000031_pilon 302043..304439 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10338.t1.start1	Gchil10338.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000031_pilon 302043..302045 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10338.t1.CDS1	Gchil10338.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000031_pilon 302043..304439 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10338.t1.exon1	Gchil10338.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000031_pilon 302043..304439 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10338.t1.stop1	Gchil10338.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000031_pilon 304437..304439 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10338.t1	Gchil10338.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000031_pilon 302043..304439 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000031_pilon:302043..304439+
coding sequence from alignment at tig00000031_pilon:302043..304439+

mRNA sequence

>Gchil10338.t1 ID=Gchil10338.t1|Name=Gchil10338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=799bp
MVIASLSDLVGRHIAHMEVLDGTWKAHTDNVAARCLGAPISAAVGLSVAK
AGVFLDGHALFNVKWDELTHSITFGHNEYDNPIGRIYFDNFGMSFLGIIS
ASPGSKAYAVRGTTSGRYKTQRRLKGGSGTWEDSVDLVLGTTFVDTLKFF
AELGGEDVTDRVTTTAVSGLSTTYDMATVDGMSFDPTSFTITTDPSITGE
GHVYSKFNGVFRNEKERKEWEWKGHSDDFRGRSQMHDAHQAILRQAASAI
GVPKPLASKTLSIAELHNLSSMIKNSEDPDVELYTDRAQKRGGQYFQDLL
NASLEENWAGDILGAPPVLNPELKALRERNSAWLQKEAVPNMGYTLKNCV
SDPEYEEHINKIDTTKIEENYKMFYESSEYLDCSFASYVEAYQREVVEIT
PYLKDVEGCWGEKYATFLQDEAYLNIWRIRIGSESYDGAKKEVYESYVKV
LLLCPEHSEVPDKILGVLVAEVLDVQIKKSHWNNSNNSFVAASTKNMVES
NIDFPDFTEIIEEYMIIATEMYQGLGGYERMSEVFEKIIINANYTEERLG
LWNPKGLTEAAKAVGKELPSSESGFLRTVDKWGTKSGETLKVLAFGSIGG
FFLTHVIDDGTTNLMSAINLPLLGAVQLLYGESDKSFLIAKRLGAWMTTN
VKVENGQLEKITSDFSAFYGDDGVIQSSEVYQTLRGSADRFSKVFASAFH
TFGMVVSGNSLRTEVQQRKVVPLPYILKCIKLFHKAFKVGMPGVTRTLGW
IGPLSKALLVVDLVQMFISWILRLLKPRPDPIRTFIDGPLKRDGYTLE*

spliced messenger RNA

>Gchil10338.t1 ID=Gchil10338.t1|Name=Gchil10338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2397bp|location=Sequence derived from alignment at tig00000031_pilon:302043..304439+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATTGCAAGTCTTTCGGACCTTGTGGGACGCCACATCGCCCACAT
GGAAGTTCTCGACGGCACGTGGAAGGCACACACGGACAACGTCGCCGCAC
GTTGCCTCGGAGCGCCCATATCTGCGGCCGTTGGATTGTCCGTGGCCAAA
GCAGGTGTGTTTCTCGACGGTCACGCCCTTTTCAACGTCAAGTGGGATGA
ATTAACGCACAGCATTACCTTTGGCCACAACGAGTATGATAATCCCATTG
GACGAATCTACTTCGACAATTTCGGCATGTCCTTTCTCGGTATCATCTCA
GCTTCACCGGGCTCCAAGGCGTATGCCGTTCGGGGTACCACGTCGGGGCG
GTACAAGACTCAACGCAGGCTGAAAGGGGGCAGTGGTACTTGGGAGGACA
GTGTCGATCTTGTTTTAGGCACCACGTTCGTAGACACACTCAAATTCTTC
GCCGAACTGGGTGGGGAAGATGTAACAGACCGAGTTACCACAACAGCAGT
CTCTGGACTTTCCACAACCTACGACATGGCGACAGTAGACGGCATGTCTT
TTGACCCCACATCATTCACCATAACCACAGATCCAAGTATCACTGGAGAG
GGACATGTTTACAGCAAGTTTAATGGTGTGTTCAGGAATGAGAAAGAACG
AAAAGAGTGGGAGTGGAAAGGACACAGTGACGACTTCCGCGGTCGTTCGC
AAATGCATGATGCACACCAAGCGATTTTGCGGCAAGCTGCCTCCGCTATT
GGAGTGCCAAAACCTCTTGCTTCAAAAACATTATCCATCGCAGAGCTGCA
CAATCTCAGTTCTATGATAAAAAATTCTGAAGATCCAGATGTAGAGCTGT
ACACTGACAGAGCGCAAAAGAGAGGAGGGCAGTACTTTCAAGATCTTTTG
AACGCTTCATTGGAAGAAAATTGGGCGGGTGACATTTTAGGAGCTCCCCC
CGTTTTGAATCCGGAATTGAAAGCGTTGCGTGAACGAAACAGTGCCTGGT
TACAGAAAGAAGCAGTTCCGAACATGGGATATACCCTCAAAAATTGTGTG
TCAGACCCTGAATACGAAGAACACATCAACAAAATCGATACAACGAAGAT
CGAGGAAAACTACAAAATGTTTTACGAATCATCTGAATACTTAGACTGCT
CGTTTGCTTCGTACGTGGAAGCCTATCAAAGGGAAGTTGTGGAAATCACT
CCCTACCTCAAAGACGTTGAAGGTTGTTGGGGAGAAAAGTACGCAACCTT
TCTGCAGGATGAAGCCTATTTGAACATTTGGCGCATTCGTATTGGAAGTG
AATCATATGACGGCGCGAAGAAAGAAGTTTACGAATCGTACGTGAAGGTA
CTCCTTCTGTGCCCAGAACATTCCGAAGTTCCAGATAAAATATTAGGGGT
TTTGGTGGCTGAAGTGCTAGACGTGCAAATCAAAAAGTCGCATTGGAACA
ACTCAAACAACTCCTTTGTTGCAGCCAGCACAAAAAATATGGTTGAAAGC
AACATCGATTTTCCTGATTTCACCGAAATCATTGAAGAATATATGATAAT
TGCGACGGAAATGTACCAAGGCCTCGGAGGTTATGAGCGAATGAGCGAAG
TTTTTGAAAAAATTATCATCAATGCCAACTACACTGAGGAGAGACTCGGA
TTGTGGAATCCGAAAGGGTTAACGGAGGCCGCCAAAGCAGTTGGTAAAGA
GCTGCCTTCAAGCGAAAGTGGATTTTTAAGAACCGTAGACAAGTGGGGAA
CAAAATCAGGGGAAACTCTCAAGGTCTTGGCTTTCGGGAGTATTGGTGGT
TTTTTTCTTACTCACGTGATTGACGACGGTACTACGAACCTCATGTCTGC
CATAAATCTTCCTTTGCTTGGGGCGGTACAGTTGCTGTATGGTGAAAGCG
ACAAATCATTCTTGATCGCGAAACGTCTTGGAGCATGGATGACGACCAAC
GTTAAGGTAGAAAATGGCCAACTGGAAAAAATTACCTCCGACTTCAGCGC
CTTTTATGGGGATGATGGAGTTATCCAATCTTCAGAAGTGTACCAAACGT
TGAGAGGCTCTGCAGACCGTTTTTCGAAAGTATTCGCTTCCGCTTTTCAC
ACATTTGGTATGGTCGTGAGTGGAAATTCGCTTCGAACGGAAGTGCAGCA
GAGAAAAGTCGTACCCCTTCCGTATATTCTGAAATGCATCAAACTCTTTC
ACAAGGCTTTTAAAGTTGGAATGCCCGGAGTGACAAGGACTTTGGGATGG
ATTGGCCCTTTGTCCAAAGCATTACTTGTGGTAGATCTAGTGCAAATGTT
CATCTCATGGATACTAAGATTGCTAAAGCCACGACCAGATCCGATAAGAA
CTTTCATCGATGGGCCGCTGAAAAGAGACGGCTACACACTAGAATAG

protein sequence of Gchil10338.t1

>Gchil10338.t1 ID=Gchil10338.t1|Name=Gchil10338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=799bp
MVIASLSDLVGRHIAHMEVLDGTWKAHTDNVAARCLGAPISAAVGLSVAK
AGVFLDGHALFNVKWDELTHSITFGHNEYDNPIGRIYFDNFGMSFLGIIS
ASPGSKAYAVRGTTSGRYKTQRRLKGGSGTWEDSVDLVLGTTFVDTLKFF
AELGGEDVTDRVTTTAVSGLSTTYDMATVDGMSFDPTSFTITTDPSITGE
GHVYSKFNGVFRNEKERKEWEWKGHSDDFRGRSQMHDAHQAILRQAASAI
GVPKPLASKTLSIAELHNLSSMIKNSEDPDVELYTDRAQKRGGQYFQDLL
NASLEENWAGDILGAPPVLNPELKALRERNSAWLQKEAVPNMGYTLKNCV
SDPEYEEHINKIDTTKIEENYKMFYESSEYLDCSFASYVEAYQREVVEIT
PYLKDVEGCWGEKYATFLQDEAYLNIWRIRIGSESYDGAKKEVYESYVKV
LLLCPEHSEVPDKILGVLVAEVLDVQIKKSHWNNSNNSFVAASTKNMVES
NIDFPDFTEIIEEYMIIATEMYQGLGGYERMSEVFEKIIINANYTEERLG
LWNPKGLTEAAKAVGKELPSSESGFLRTVDKWGTKSGETLKVLAFGSIGG
FFLTHVIDDGTTNLMSAINLPLLGAVQLLYGESDKSFLIAKRLGAWMTTN
VKVENGQLEKITSDFSAFYGDDGVIQSSEVYQTLRGSADRFSKVFASAFH
TFGMVVSGNSLRTEVQQRKVVPLPYILKCIKLFHKAFKVGMPGVTRTLGW
IGPLSKALLVVDLVQMFISWILRLLKPRPDPIRTFIDGPLKRDGYTLE*

mRNA from alignment at tig00000031_pilon:302043..304439+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10338.t1 ID=Gchil10338.t1|Name=Gchil10338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2397bp|location=Sequence derived from alignment at tig00000031_pilon:302043..304439+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATTGCAAGTCTTTCGGACCTTGTGGGACGCCACATCGCCCACAT
GGAAGTTCTCGACGGCACGTGGAAGGCACACACGGACAACGTCGCCGCAC
GTTGCCTCGGAGCGCCCATATCTGCGGCCGTTGGATTGTCCGTGGCCAAA
GCAGGTGTGTTTCTCGACGGTCACGCCCTTTTCAACGTCAAGTGGGATGA
ATTAACGCACAGCATTACCTTTGGCCACAACGAGTATGATAATCCCATTG
GACGAATCTACTTCGACAATTTCGGCATGTCCTTTCTCGGTATCATCTCA
GCTTCACCGGGCTCCAAGGCGTATGCCGTTCGGGGTACCACGTCGGGGCG
GTACAAGACTCAACGCAGGCTGAAAGGGGGCAGTGGTACTTGGGAGGACA
GTGTCGATCTTGTTTTAGGCACCACGTTCGTAGACACACTCAAATTCTTC
GCCGAACTGGGTGGGGAAGATGTAACAGACCGAGTTACCACAACAGCAGT
CTCTGGACTTTCCACAACCTACGACATGGCGACAGTAGACGGCATGTCTT
TTGACCCCACATCATTCACCATAACCACAGATCCAAGTATCACTGGAGAG
GGACATGTTTACAGCAAGTTTAATGGTGTGTTCAGGAATGAGAAAGAACG
AAAAGAGTGGGAGTGGAAAGGACACAGTGACGACTTCCGCGGTCGTTCGC
AAATGCATGATGCACACCAAGCGATTTTGCGGCAAGCTGCCTCCGCTATT
GGAGTGCCAAAACCTCTTGCTTCAAAAACATTATCCATCGCAGAGCTGCA
CAATCTCAGTTCTATGATAAAAAATTCTGAAGATCCAGATGTAGAGCTGT
ACACTGACAGAGCGCAAAAGAGAGGAGGGCAGTACTTTCAAGATCTTTTG
AACGCTTCATTGGAAGAAAATTGGGCGGGTGACATTTTAGGAGCTCCCCC
CGTTTTGAATCCGGAATTGAAAGCGTTGCGTGAACGAAACAGTGCCTGGT
TACAGAAAGAAGCAGTTCCGAACATGGGATATACCCTCAAAAATTGTGTG
TCAGACCCTGAATACGAAGAACACATCAACAAAATCGATACAACGAAGAT
CGAGGAAAACTACAAAATGTTTTACGAATCATCTGAATACTTAGACTGCT
CGTTTGCTTCGTACGTGGAAGCCTATCAAAGGGAAGTTGTGGAAATCACT
CCCTACCTCAAAGACGTTGAAGGTTGTTGGGGAGAAAAGTACGCAACCTT
TCTGCAGGATGAAGCCTATTTGAACATTTGGCGCATTCGTATTGGAAGTG
AATCATATGACGGCGCGAAGAAAGAAGTTTACGAATCGTACGTGAAGGTA
CTCCTTCTGTGCCCAGAACATTCCGAAGTTCCAGATAAAATATTAGGGGT
TTTGGTGGCTGAAGTGCTAGACGTGCAAATCAAAAAGTCGCATTGGAACA
ACTCAAACAACTCCTTTGTTGCAGCCAGCACAAAAAATATGGTTGAAAGC
AACATCGATTTTCCTGATTTCACCGAAATCATTGAAGAATATATGATAAT
TGCGACGGAAATGTACCAAGGCCTCGGAGGTTATGAGCGAATGAGCGAAG
TTTTTGAAAAAATTATCATCAATGCCAACTACACTGAGGAGAGACTCGGA
TTGTGGAATCCGAAAGGGTTAACGGAGGCCGCCAAAGCAGTTGGTAAAGA
GCTGCCTTCAAGCGAAAGTGGATTTTTAAGAACCGTAGACAAGTGGGGAA
CAAAATCAGGGGAAACTCTCAAGGTCTTGGCTTTCGGGAGTATTGGTGGT
TTTTTTCTTACTCACGTGATTGACGACGGTACTACGAACCTCATGTCTGC
CATAAATCTTCCTTTGCTTGGGGCGGTACAGTTGCTGTATGGTGAAAGCG
ACAAATCATTCTTGATCGCGAAACGTCTTGGAGCATGGATGACGACCAAC
GTTAAGGTAGAAAATGGCCAACTGGAAAAAATTACCTCCGACTTCAGCGC
CTTTTATGGGGATGATGGAGTTATCCAATCTTCAGAAGTGTACCAAACGT
TGAGAGGCTCTGCAGACCGTTTTTCGAAAGTATTCGCTTCCGCTTTTCAC
ACATTTGGTATGGTCGTGAGTGGAAATTCGCTTCGAACGGAAGTGCAGCA
GAGAAAAGTCGTACCCCTTCCGTATATTCTGAAATGCATCAAACTCTTTC
ACAAGGCTTTTAAAGTTGGAATGCCCGGAGTGACAAGGACTTTGGGATGG
ATTGGCCCTTTGTCCAAAGCATTACTTGTGGTAGATCTAGTGCAAATGTT
CATCTCATGGATACTAAGATTGCTAAAGCCACGACCAGATCCGATAAGAA
CTTTCATCGATGGGCCGCTGAAAAGAGACGGCTACACACTAGAATAG

Coding sequence (CDS) from alignment at tig00000031_pilon:302043..304439+

>Gchil10338.t1 ID=Gchil10338.t1|Name=Gchil10338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2397bp|location=Sequence derived from alignment at tig00000031_pilon:302043..304439+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCATTGCAAGTCTTTCGGACCTTGTGGGACGCCACATCGCCCACAT
GGAAGTTCTCGACGGCACGTGGAAGGCACACACGGACAACGTCGCCGCAC
GTTGCCTCGGAGCGCCCATATCTGCGGCCGTTGGATTGTCCGTGGCCAAA
GCAGGTGTGTTTCTCGACGGTCACGCCCTTTTCAACGTCAAGTGGGATGA
ATTAACGCACAGCATTACCTTTGGCCACAACGAGTATGATAATCCCATTG
GACGAATCTACTTCGACAATTTCGGCATGTCCTTTCTCGGTATCATCTCA
GCTTCACCGGGCTCCAAGGCGTATGCCGTTCGGGGTACCACGTCGGGGCG
GTACAAGACTCAACGCAGGCTGAAAGGGGGCAGTGGTACTTGGGAGGACA
GTGTCGATCTTGTTTTAGGCACCACGTTCGTAGACACACTCAAATTCTTC
GCCGAACTGGGTGGGGAAGATGTAACAGACCGAGTTACCACAACAGCAGT
CTCTGGACTTTCCACAACCTACGACATGGCGACAGTAGACGGCATGTCTT
TTGACCCCACATCATTCACCATAACCACAGATCCAAGTATCACTGGAGAG
GGACATGTTTACAGCAAGTTTAATGGTGTGTTCAGGAATGAGAAAGAACG
AAAAGAGTGGGAGTGGAAAGGACACAGTGACGACTTCCGCGGTCGTTCGC
AAATGCATGATGCACACCAAGCGATTTTGCGGCAAGCTGCCTCCGCTATT
GGAGTGCCAAAACCTCTTGCTTCAAAAACATTATCCATCGCAGAGCTGCA
CAATCTCAGTTCTATGATAAAAAATTCTGAAGATCCAGATGTAGAGCTGT
ACACTGACAGAGCGCAAAAGAGAGGAGGGCAGTACTTTCAAGATCTTTTG
AACGCTTCATTGGAAGAAAATTGGGCGGGTGACATTTTAGGAGCTCCCCC
CGTTTTGAATCCGGAATTGAAAGCGTTGCGTGAACGAAACAGTGCCTGGT
TACAGAAAGAAGCAGTTCCGAACATGGGATATACCCTCAAAAATTGTGTG
TCAGACCCTGAATACGAAGAACACATCAACAAAATCGATACAACGAAGAT
CGAGGAAAACTACAAAATGTTTTACGAATCATCTGAATACTTAGACTGCT
CGTTTGCTTCGTACGTGGAAGCCTATCAAAGGGAAGTTGTGGAAATCACT
CCCTACCTCAAAGACGTTGAAGGTTGTTGGGGAGAAAAGTACGCAACCTT
TCTGCAGGATGAAGCCTATTTGAACATTTGGCGCATTCGTATTGGAAGTG
AATCATATGACGGCGCGAAGAAAGAAGTTTACGAATCGTACGTGAAGGTA
CTCCTTCTGTGCCCAGAACATTCCGAAGTTCCAGATAAAATATTAGGGGT
TTTGGTGGCTGAAGTGCTAGACGTGCAAATCAAAAAGTCGCATTGGAACA
ACTCAAACAACTCCTTTGTTGCAGCCAGCACAAAAAATATGGTTGAAAGC
AACATCGATTTTCCTGATTTCACCGAAATCATTGAAGAATATATGATAAT
TGCGACGGAAATGTACCAAGGCCTCGGAGGTTATGAGCGAATGAGCGAAG
TTTTTGAAAAAATTATCATCAATGCCAACTACACTGAGGAGAGACTCGGA
TTGTGGAATCCGAAAGGGTTAACGGAGGCCGCCAAAGCAGTTGGTAAAGA
GCTGCCTTCAAGCGAAAGTGGATTTTTAAGAACCGTAGACAAGTGGGGAA
CAAAATCAGGGGAAACTCTCAAGGTCTTGGCTTTCGGGAGTATTGGTGGT
TTTTTTCTTACTCACGTGATTGACGACGGTACTACGAACCTCATGTCTGC
CATAAATCTTCCTTTGCTTGGGGCGGTACAGTTGCTGTATGGTGAAAGCG
ACAAATCATTCTTGATCGCGAAACGTCTTGGAGCATGGATGACGACCAAC
GTTAAGGTAGAAAATGGCCAACTGGAAAAAATTACCTCCGACTTCAGCGC
CTTTTATGGGGATGATGGAGTTATCCAATCTTCAGAAGTGTACCAAACGT
TGAGAGGCTCTGCAGACCGTTTTTCGAAAGTATTCGCTTCCGCTTTTCAC
ACATTTGGTATGGTCGTGAGTGGAAATTCGCTTCGAACGGAAGTGCAGCA
GAGAAAAGTCGTACCCCTTCCGTATATTCTGAAATGCATCAAACTCTTTC
ACAAGGCTTTTAAAGTTGGAATGCCCGGAGTGACAAGGACTTTGGGATGG
ATTGGCCCTTTGTCCAAAGCATTACTTGTGGTAGATCTAGTGCAAATGTT
CATCTCATGGATACTAAGATTGCTAAAGCCACGACCAGATCCGATAAGAA
CTTTCATCGATGGGCCGCTGAAAAGAGACGGCTACACACTAGAATAG