Gchil10331.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10331.t1
Unique NameGchil10331.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length591
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:68311..70083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI1G29760.1
PFAMsGlyco_transf_92
Max annot lvl35493|Streptophyta
Evalue5.39e-12
EggNOG OGsCOG0463@1|root,2QTF9@2759|Eukaryota,37N9S@33090|Viridiplantae,3GBHN@35493|Streptophyta,3KVVU@4447|Liliopsida,3I4Q3@38820|Poales
DescriptionGlycosyltransferase family 92
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10331Gchil10331Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 68311..70083 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10331.t1.stop1Gchil10331.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 68311..68313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10331.t1.CDS1Gchil10331.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 68311..70083 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10331.t1.exon1Gchil10331.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 68311..70083 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10331.t1.start1Gchil10331.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 70081..70083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10331.t1Gchil10331.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 68311..70083 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10331.t1 ID=Gchil10331.t1|Name=Gchil10331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=591bp
MKAPNTPHPYVCDTNLFLSHPLSNSKRRPNGFAHLRKGIRKLFVSRNVVL
FGAFVLAVAVLVPSFVFPNEFETRTRWLLNRERSTVVLSMRSGASEHSPT
NWSLPPRIHTIYKMSRDNPEVQHIRTRDWTRPHIFLHYARPHPLDRTTAE
LFIFANGVTLGDFNRNINVVGCLVGQDVYPAEMLKGDVFSCQVPLPIQAG
SLISLVLPHSDEIRHQVQKGVKLAPHLDASIKENDLVPLSNGTRLHFDRV
HDSLMYVSSEQRYEALADDWDPDADDSPPRYEVCLGTQIKPFTNYLDDWI
AYYTRIGVDMVFVADNDAPVDLSKKYEGRDDVQVLYWPWRRSQVQGLTYI
TIAARPRCEWIMIADVDELPMLGIGENRQLAGKHVLRRYLRRHLSSEYKQ
FHFPFLVMGNSGLVRTPPGPMPEVYVHMADNHPQNGKSVARTDHWWRFTS
LHMFGGIPTAVAPVDWNATRKYYPVDEDDQPITVHFHHRAFEDMIVKQKY
GSATTDGAPGPNQDLELPAEIPAWVTKIDDSKQYYYFRDIYRAIMKHPFE
LKQTLVRKSEGKRCMASLYTVGERRGMIEEGYGCGHGEQY*
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spliced messenger RNA

>Gchil10331.t1 ID=Gchil10331.t1|Name=Gchil10331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000031_pilon:68311..70083- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCTCCAAACACCCCTCACCCGTATGTCTGTGACACCAACTTATT
TCTCTCTCACCCTTTGTCCAATTCGAAACGACGGCCCAATGGTTTTGCTC
ACCTGAGAAAAGGCATTCGCAAACTTTTCGTCTCGCGAAACGTTGTGCTC
TTCGGCGCCTTCGTTCTTGCCGTCGCTGTGCTTGTACCGTCGTTCGTGTT
TCCAAACGAGTTTGAAACTCGAACAAGATGGCTGCTCAACCGCGAACGGT
CTACCGTCGTGTTGTCCATGCGTTCGGGAGCATCGGAACATAGTCCCACC
AACTGGTCATTACCGCCGCGCATTCACACCATCTACAAGATGAGTCGCGA
CAACCCGGAGGTGCAACACATTCGCACGCGAGATTGGACGCGTCCACATA
TTTTTTTGCATTACGCGCGACCGCATCCACTTGACCGCACCACTGCAGAG
CTCTTCATTTTTGCCAATGGAGTCACGTTGGGTGATTTCAATCGCAATAT
CAACGTGGTCGGTTGTCTTGTTGGTCAAGATGTTTATCCAGCCGAAATGC
TCAAGGGAGATGTGTTCTCCTGTCAAGTTCCATTACCCATTCAAGCAGGC
AGTCTTATCTCCCTCGTTCTACCTCACAGCGACGAGATCCGCCACCAAGT
GCAGAAGGGCGTGAAACTCGCTCCGCATCTCGACGCCAGCATCAAAGAGA
ATGATCTTGTTCCGTTGTCGAATGGTACGCGTCTTCACTTCGACCGGGTA
CACGACTCCTTGATGTATGTCAGCTCTGAACAACGGTACGAAGCGCTTGC
AGATGATTGGGATCCAGATGCTGATGATAGTCCCCCCCGATACGAAGTGT
GCCTCGGAACACAAATCAAGCCTTTCACCAACTACCTTGATGATTGGATT
GCGTACTACACGCGAATCGGGGTGGATATGGTGTTCGTTGCGGACAACGA
CGCACCAGTTGATCTTTCCAAAAAGTACGAGGGCAGAGACGATGTTCAGG
TGTTGTATTGGCCTTGGCGTCGATCTCAAGTGCAAGGACTCACTTACATC
ACCATTGCGGCACGGCCACGCTGTGAATGGATAATGATAGCTGACGTTGA
TGAACTTCCAATGCTTGGCATAGGAGAGAACAGGCAACTAGCTGGGAAGC
ACGTGCTGAGGCGATACTTGCGACGTCATCTAAGCAGTGAATACAAGCAG
TTTCATTTCCCATTCTTGGTCATGGGAAACTCAGGACTTGTGAGAACGCC
ACCAGGTCCGATGCCAGAAGTGTATGTGCACATGGCTGACAACCATCCGC
AGAATGGCAAGTCAGTCGCTCGTACTGATCACTGGTGGAGATTCACATCT
TTACATATGTTTGGAGGGATACCCACCGCAGTGGCTCCGGTGGATTGGAA
TGCTACCCGCAAATACTACCCTGTTGACGAAGACGATCAACCGATCACAG
TACATTTCCATCACCGCGCGTTTGAGGACATGATTGTGAAACAGAAGTAT
GGTTCCGCTACCACTGACGGCGCACCTGGTCCCAACCAGGACCTCGAACT
TCCAGCTGAAATACCTGCTTGGGTCACAAAGATCGACGACAGCAAGCAGT
ACTATTACTTTCGGGACATTTATCGTGCCATCATGAAGCATCCATTCGAA
CTAAAGCAAACGCTCGTTAGAAAATCTGAAGGAAAGAGATGTATGGCCAG
TCTTTACACCGTCGGTGAAAGACGGGGAATGATAGAAGAAGGATATGGAT
GTGGCCACGGAGAGCAATATTGA
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protein sequence of Gchil10331.t1

>Gchil10331.t1 ID=Gchil10331.t1|Name=Gchil10331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=591bp
MKAPNTPHPYVCDTNLFLSHPLSNSKRRPNGFAHLRKGIRKLFVSRNVVL
FGAFVLAVAVLVPSFVFPNEFETRTRWLLNRERSTVVLSMRSGASEHSPT
NWSLPPRIHTIYKMSRDNPEVQHIRTRDWTRPHIFLHYARPHPLDRTTAE
LFIFANGVTLGDFNRNINVVGCLVGQDVYPAEMLKGDVFSCQVPLPIQAG
SLISLVLPHSDEIRHQVQKGVKLAPHLDASIKENDLVPLSNGTRLHFDRV
HDSLMYVSSEQRYEALADDWDPDADDSPPRYEVCLGTQIKPFTNYLDDWI
AYYTRIGVDMVFVADNDAPVDLSKKYEGRDDVQVLYWPWRRSQVQGLTYI
TIAARPRCEWIMIADVDELPMLGIGENRQLAGKHVLRRYLRRHLSSEYKQ
FHFPFLVMGNSGLVRTPPGPMPEVYVHMADNHPQNGKSVARTDHWWRFTS
LHMFGGIPTAVAPVDWNATRKYYPVDEDDQPITVHFHHRAFEDMIVKQKY
GSATTDGAPGPNQDLELPAEIPAWVTKIDDSKQYYYFRDIYRAIMKHPFE
LKQTLVRKSEGKRCMASLYTVGERRGMIEEGYGCGHGEQY*
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mRNA from alignment at tig00000031_pilon:68311..70083-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10331.t1 ID=Gchil10331.t1|Name=Gchil10331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000031_pilon:68311..70083- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCTCCAAACACCCCTCACCCGTATGTCTGTGACACCAACTTATT
TCTCTCTCACCCTTTGTCCAATTCGAAACGACGGCCCAATGGTTTTGCTC
ACCTGAGAAAAGGCATTCGCAAACTTTTCGTCTCGCGAAACGTTGTGCTC
TTCGGCGCCTTCGTTCTTGCCGTCGCTGTGCTTGTACCGTCGTTCGTGTT
TCCAAACGAGTTTGAAACTCGAACAAGATGGCTGCTCAACCGCGAACGGT
CTACCGTCGTGTTGTCCATGCGTTCGGGAGCATCGGAACATAGTCCCACC
AACTGGTCATTACCGCCGCGCATTCACACCATCTACAAGATGAGTCGCGA
CAACCCGGAGGTGCAACACATTCGCACGCGAGATTGGACGCGTCCACATA
TTTTTTTGCATTACGCGCGACCGCATCCACTTGACCGCACCACTGCAGAG
CTCTTCATTTTTGCCAATGGAGTCACGTTGGGTGATTTCAATCGCAATAT
CAACGTGGTCGGTTGTCTTGTTGGTCAAGATGTTTATCCAGCCGAAATGC
TCAAGGGAGATGTGTTCTCCTGTCAAGTTCCATTACCCATTCAAGCAGGC
AGTCTTATCTCCCTCGTTCTACCTCACAGCGACGAGATCCGCCACCAAGT
GCAGAAGGGCGTGAAACTCGCTCCGCATCTCGACGCCAGCATCAAAGAGA
ATGATCTTGTTCCGTTGTCGAATGGTACGCGTCTTCACTTCGACCGGGTA
CACGACTCCTTGATGTATGTCAGCTCTGAACAACGGTACGAAGCGCTTGC
AGATGATTGGGATCCAGATGCTGATGATAGTCCCCCCCGATACGAAGTGT
GCCTCGGAACACAAATCAAGCCTTTCACCAACTACCTTGATGATTGGATT
GCGTACTACACGCGAATCGGGGTGGATATGGTGTTCGTTGCGGACAACGA
CGCACCAGTTGATCTTTCCAAAAAGTACGAGGGCAGAGACGATGTTCAGG
TGTTGTATTGGCCTTGGCGTCGATCTCAAGTGCAAGGACTCACTTACATC
ACCATTGCGGCACGGCCACGCTGTGAATGGATAATGATAGCTGACGTTGA
TGAACTTCCAATGCTTGGCATAGGAGAGAACAGGCAACTAGCTGGGAAGC
ACGTGCTGAGGCGATACTTGCGACGTCATCTAAGCAGTGAATACAAGCAG
TTTCATTTCCCATTCTTGGTCATGGGAAACTCAGGACTTGTGAGAACGCC
ACCAGGTCCGATGCCAGAAGTGTATGTGCACATGGCTGACAACCATCCGC
AGAATGGCAAGTCAGTCGCTCGTACTGATCACTGGTGGAGATTCACATCT
TTACATATGTTTGGAGGGATACCCACCGCAGTGGCTCCGGTGGATTGGAA
TGCTACCCGCAAATACTACCCTGTTGACGAAGACGATCAACCGATCACAG
TACATTTCCATCACCGCGCGTTTGAGGACATGATTGTGAAACAGAAGTAT
GGTTCCGCTACCACTGACGGCGCACCTGGTCCCAACCAGGACCTCGAACT
TCCAGCTGAAATACCTGCTTGGGTCACAAAGATCGACGACAGCAAGCAGT
ACTATTACTTTCGGGACATTTATCGTGCCATCATGAAGCATCCATTCGAA
CTAAAGCAAACGCTCGTTAGAAAATCTGAAGGAAAGAGATGTATGGCCAG
TCTTTACACCGTCGGTGAAAGACGGGGAATGATAGAAGAAGGATATGGAT
GTGGCCACGGAGAGCAATATTGA
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Coding sequence (CDS) from alignment at tig00000031_pilon:68311..70083-

>Gchil10331.t1 ID=Gchil10331.t1|Name=Gchil10331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000031_pilon:68311..70083- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCTCCAAACACCCCTCACCCGTATGTCTGTGACACCAACTTATT
TCTCTCTCACCCTTTGTCCAATTCGAAACGACGGCCCAATGGTTTTGCTC
ACCTGAGAAAAGGCATTCGCAAACTTTTCGTCTCGCGAAACGTTGTGCTC
TTCGGCGCCTTCGTTCTTGCCGTCGCTGTGCTTGTACCGTCGTTCGTGTT
TCCAAACGAGTTTGAAACTCGAACAAGATGGCTGCTCAACCGCGAACGGT
CTACCGTCGTGTTGTCCATGCGTTCGGGAGCATCGGAACATAGTCCCACC
AACTGGTCATTACCGCCGCGCATTCACACCATCTACAAGATGAGTCGCGA
CAACCCGGAGGTGCAACACATTCGCACGCGAGATTGGACGCGTCCACATA
TTTTTTTGCATTACGCGCGACCGCATCCACTTGACCGCACCACTGCAGAG
CTCTTCATTTTTGCCAATGGAGTCACGTTGGGTGATTTCAATCGCAATAT
CAACGTGGTCGGTTGTCTTGTTGGTCAAGATGTTTATCCAGCCGAAATGC
TCAAGGGAGATGTGTTCTCCTGTCAAGTTCCATTACCCATTCAAGCAGGC
AGTCTTATCTCCCTCGTTCTACCTCACAGCGACGAGATCCGCCACCAAGT
GCAGAAGGGCGTGAAACTCGCTCCGCATCTCGACGCCAGCATCAAAGAGA
ATGATCTTGTTCCGTTGTCGAATGGTACGCGTCTTCACTTCGACCGGGTA
CACGACTCCTTGATGTATGTCAGCTCTGAACAACGGTACGAAGCGCTTGC
AGATGATTGGGATCCAGATGCTGATGATAGTCCCCCCCGATACGAAGTGT
GCCTCGGAACACAAATCAAGCCTTTCACCAACTACCTTGATGATTGGATT
GCGTACTACACGCGAATCGGGGTGGATATGGTGTTCGTTGCGGACAACGA
CGCACCAGTTGATCTTTCCAAAAAGTACGAGGGCAGAGACGATGTTCAGG
TGTTGTATTGGCCTTGGCGTCGATCTCAAGTGCAAGGACTCACTTACATC
ACCATTGCGGCACGGCCACGCTGTGAATGGATAATGATAGCTGACGTTGA
TGAACTTCCAATGCTTGGCATAGGAGAGAACAGGCAACTAGCTGGGAAGC
ACGTGCTGAGGCGATACTTGCGACGTCATCTAAGCAGTGAATACAAGCAG
TTTCATTTCCCATTCTTGGTCATGGGAAACTCAGGACTTGTGAGAACGCC
ACCAGGTCCGATGCCAGAAGTGTATGTGCACATGGCTGACAACCATCCGC
AGAATGGCAAGTCAGTCGCTCGTACTGATCACTGGTGGAGATTCACATCT
TTACATATGTTTGGAGGGATACCCACCGCAGTGGCTCCGGTGGATTGGAA
TGCTACCCGCAAATACTACCCTGTTGACGAAGACGATCAACCGATCACAG
TACATTTCCATCACCGCGCGTTTGAGGACATGATTGTGAAACAGAAGTAT
GGTTCCGCTACCACTGACGGCGCACCTGGTCCCAACCAGGACCTCGAACT
TCCAGCTGAAATACCTGCTTGGGTCACAAAGATCGACGACAGCAAGCAGT
ACTATTACTTTCGGGACATTTATCGTGCCATCATGAAGCATCCATTCGAA
CTAAAGCAAACGCTCGTTAGAAAATCTGAAGGAAAGAGATGTATGGCCAG
TCTTTACACCGTCGGTGAAAGACGGGGAATGATAGAAGAAGGATATGGAT
GTGGCCACGGAGAGCAATATTGA
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