Gchil10257.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10257.t1
Unique NameGchil10257.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length605
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:167441..170092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10257Gchil10257Gracilaria chilensis NLEC103_M9 malegenetig00000065_pilon 167441..170092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10257.t1Gchil10257.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000065_pilon 167441..170092 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10257.t1.stop1Gchil10257.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000065_pilon 167441..167443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10257.t1.CDS1Gchil10257.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 167441..167576 -
Gchil10257.t1.CDS2Gchil10257.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 168331..168563 -
Gchil10257.t1.CDS3Gchil10257.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 168647..170092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10257.t1.exon1Gchil10257.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 167441..167576 -
Gchil10257.t1.exon2Gchil10257.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 168331..168563 -
Gchil10257.t1.exon3Gchil10257.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 168647..170092 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10257.t1.intron1Gchil10257.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000065_pilon 167577..168330 -
Gchil10257.t1.intron2Gchil10257.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000065_pilon 168564..168646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10257.t1.start1Gchil10257.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000065_pilon 170090..170092 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10257.t1 ID=Gchil10257.t1|Name=Gchil10257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=605bp
MASNILFPLVAVFVSFAFANPFPHAIPPLQLITSSQSCLRDVECPPEQYC
KAPISTQNNFFFFGSGLLEASTCVPRLPEGSNCTSVGDSECEDGTFCGFI
DDSNPSPITCLRQLPSGASCALSATDPCQGDLVCELEPTCRPFTFGFAGD
FCQFDRQCQQQQGFYCRSNFNECTARRPPGGVCELEPENFECQGFCVSSG
TFGEKPGVCQRLQTAGEKCNDDRQCLTIAPPFQTSRTVNLLCNRPTGTTG
TCVLETDLIRDLGAPCDPTNDTCDARRGLSCHHEGTHGKCVQRATAPDSF
QHFCTPNSPLSSCPPDDFGNLRECRRALNSEKEFEGVFACRIRRQVVPLG
NPCNNEEFAVCSRRAVCMEAPGVERPTGRFPPPPLRTCMKILPIGAPCPD
QFRFKCEDGSFCVNGTCQRAESSPTVPIEFAFVNRDCSELSCPPGTECSA
DSDVPNSAKVCRLPAIEVDLWKPCFRAAQFRLECEAGLQCSRSYLGRGVR
VCRPKRGIGGICDNDDSCVGDLECDPSSREKPFERRCFDPSLSLNRGDSC
NPYPAPEDPSTFVNHTLPTGVVALRAKDHCAQKVRLAARYMWCLVTPNSH
YTPS*
back to top

spliced messenger RNA

>Gchil10257.t1 ID=Gchil10257.t1|Name=Gchil10257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000065_pilon:167441..170092- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTAACATCTTGTTTCCGCTCGTGGCCGTCTTCGTGTCCTTCGC
CTTCGCCAACCCATTCCCACATGCAATCCCGCCTCTCCAGCTCATCACTT
CCTCGCAGTCTTGTCTCCGCGACGTCGAATGCCCGCCGGAGCAATACTGC
AAGGCGCCGATCTCCACACAGAACAATTTCTTTTTCTTCGGATCCGGCTT
GCTGGAAGCTTCTACCTGTGTTCCGCGGCTACCGGAAGGTTCCAACTGCA
CCAGTGTGGGAGACTCGGAGTGTGAGGACGGAACATTCTGCGGCTTCATA
GATGATTCCAATCCGTCGCCGATAACCTGTCTGCGTCAGCTTCCTTCTGG
TGCCAGCTGCGCGCTTTCTGCAACTGATCCCTGTCAGGGAGATCTCGTCT
GCGAACTTGAACCCACGTGCCGTCCGTTCACCTTTGGATTTGCTGGTGAC
TTCTGTCAATTTGATCGCCAATGTCAACAGCAACAAGGCTTCTACTGTCG
TTCCAACTTTAACGAATGCACCGCAAGGAGACCGCCTGGGGGAGTGTGCG
AACTCGAACCGGAGAACTTCGAATGCCAGGGCTTCTGTGTCAGCTCCGGT
ACCTTTGGCGAGAAGCCGGGCGTCTGTCAGCGACTACAAACCGCAGGAGA
GAAGTGTAACGACGACAGGCAGTGCTTGACCATAGCACCTCCATTCCAAA
CATCTCGCACCGTCAATCTTCTCTGTAACAGACCTACGGGCACCACCGGT
ACCTGTGTCCTCGAAACTGATCTCATCCGCGACTTGGGAGCTCCTTGCGA
TCCTACTAACGATACGTGCGATGCTCGAAGAGGATTAAGCTGTCATCATG
AAGGCACCCATGGCAAGTGCGTTCAACGTGCAACGGCCCCTGATTCTTTC
CAGCATTTCTGCACGCCCAACTCTCCACTGAGTAGCTGTCCGCCTGATGA
TTTCGGTAATCTTCGCGAGTGTCGTCGCGCTTTGAATAGCGAGAAGGAAT
TCGAGGGAGTATTCGCGTGTAGAATCCGTCGTCAGGTCGTGCCACTTGGT
AATCCTTGCAATAATGAAGAGTTTGCCGTATGTTCACGGAGGGCCGTTTG
TATGGAAGCCCCGGGAGTTGAGCGACCGACGGGTCGCTTTCCACCGCCAC
CGTTGCGCACCTGCATGAAGATTTTACCGATTGGTGCCCCATGCCCAGAT
CAGTTCCGCTTCAAATGCGAGGACGGATCCTTCTGCGTGAATGGCACTTG
TCAGCGAGCGGAATCCTCCCCAACCGTTCCTATTGAGTTCGCGTTTGTCA
ATAGGGACTGTTCTGAACTATCTTGTCCACCTGGGACAGAATGTTCCGCG
GATTCTGACGTGCCTAACAGTGCCAAGGTCTGCAGGCTACCGGCGATAGA
AGTGGACTTGTGGAAACCATGCTTTCGAGCAGCCCAATTTCGACTCGAGT
GTGAGGCTGGTTTACAATGTTCTCGAAGCTATCTAGGGAGAGGTGTGAGA
GTGTGCCGACCGAAGAGAGGAATAGGAGGTATATGTGATAATGACGATTC
ATGTGTTGGAGACCTGGAGTGCGATCCGTCTTCCAGAGAGAAGCCTTTTG
AAAGACGATGCTTTGACCCCTCTCTTTCGCTCAATCGTGGAGACTCTTGC
AATCCGTATCCTGCGCCTGAAGATCCGAGCACTTTCGTCAACCACACGCT
ACCCACCGGAGTAGTAGCGCTCCGGGCCAAAGACCACTGTGCTCAGAAAG
TTCGGCTTGCTGCCCGGTATATGTGGTGTCTTGTCACCCCGAATTCCCAC
TATACACCATCTTAA
back to top

protein sequence of Gchil10257.t1

>Gchil10257.t1 ID=Gchil10257.t1|Name=Gchil10257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=605bp
MASNILFPLVAVFVSFAFANPFPHAIPPLQLITSSQSCLRDVECPPEQYC
KAPISTQNNFFFFGSGLLEASTCVPRLPEGSNCTSVGDSECEDGTFCGFI
DDSNPSPITCLRQLPSGASCALSATDPCQGDLVCELEPTCRPFTFGFAGD
FCQFDRQCQQQQGFYCRSNFNECTARRPPGGVCELEPENFECQGFCVSSG
TFGEKPGVCQRLQTAGEKCNDDRQCLTIAPPFQTSRTVNLLCNRPTGTTG
TCVLETDLIRDLGAPCDPTNDTCDARRGLSCHHEGTHGKCVQRATAPDSF
QHFCTPNSPLSSCPPDDFGNLRECRRALNSEKEFEGVFACRIRRQVVPLG
NPCNNEEFAVCSRRAVCMEAPGVERPTGRFPPPPLRTCMKILPIGAPCPD
QFRFKCEDGSFCVNGTCQRAESSPTVPIEFAFVNRDCSELSCPPGTECSA
DSDVPNSAKVCRLPAIEVDLWKPCFRAAQFRLECEAGLQCSRSYLGRGVR
VCRPKRGIGGICDNDDSCVGDLECDPSSREKPFERRCFDPSLSLNRGDSC
NPYPAPEDPSTFVNHTLPTGVVALRAKDHCAQKVRLAARYMWCLVTPNSH
YTPS*
back to top

mRNA from alignment at tig00000065_pilon:167441..170092-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10257.t1 ID=Gchil10257.t1|Name=Gchil10257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2652bp|location=Sequence derived from alignment at tig00000065_pilon:167441..170092- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTAACATCTTGTTTCCGCTCGTGGCCGTCTTCGTGTCCTTCGC
CTTCGCCAACCCATTCCCACATGCAATCCCGCCTCTCCAGCTCATCACTT
CCTCGCAGTCTTGTCTCCGCGACGTCGAATGCCCGCCGGAGCAATACTGC
AAGGCGCCGATCTCCACACAGAACAATTTCTTTTTCTTCGGATCCGGCTT
GCTGGAAGCTTCTACCTGTGTTCCGCGGCTACCGGAAGGTTCCAACTGCA
CCAGTGTGGGAGACTCGGAGTGTGAGGACGGAACATTCTGCGGCTTCATA
GATGATTCCAATCCGTCGCCGATAACCTGTCTGCGTCAGCTTCCTTCTGG
TGCCAGCTGCGCGCTTTCTGCAACTGATCCCTGTCAGGGAGATCTCGTCT
GCGAACTTGAACCCACGTGCCGTCCGTTCACCTTTGGATTTGCTGGTGAC
TTCTGTCAATTTGATCGCCAATGTCAACAGCAACAAGGCTTCTACTGTCG
TTCCAACTTTAACGAATGCACCGCAAGGAGACCGCCTGGGGGAGTGTGCG
AACTCGAACCGGAGAACTTCGAATGCCAGGGCTTCTGTGTCAGCTCCGGT
ACCTTTGGCGAGAAGCCGGGCGTCTGTCAGCGACTACAAACCGCAGGAGA
GAAGTGTAACGACGACAGGCAGTGCTTGACCATAGCACCTCCATTCCAAA
CATCTCGCACCGTCAATCTTCTCTGTAACAGACCTACGGGCACCACCGGT
ACCTGTGTCCTCGAAACTGATCTCATCCGCGACTTGGGAGCTCCTTGCGA
TCCTACTAACGATACGTGCGATGCTCGAAGAGGATTAAGCTGTCATCATG
AAGGCACCCATGGCAAGTGCGTTCAACGTGCAACGGCCCCTGATTCTTTC
CAGCATTTCTGCACGCCCAACTCTCCACTGAGTAGCTGTCCGCCTGATGA
TTTCGGTAATCTTCGCGAGTGTCGTCGCGCTTTGAATAGCGAGAAGGAAT
TCGAGGGAGTATTCGCGTGTAGAATCCGTCGTCAGGTCGTGCCACTTGGT
AATCCTTGCAATAATGAAGAGTTTGCCGTATGTTCACGGAGGGCCGTTTG
TATGGAAGCCCCGGGAGTTGAGCGACCGACGGGTCGCTTTCCACCGCCAC
CGTTGCGCACCTGCATGAAGATTTTACCGATTGGTGCCCCATGCCCAGAT
CAGTTCCGCTTCAAATGCGAGGACGGATCCTTCTGCGTGAATGGCACTTG
TCAGCGAGCGGAATCCTCCCCAACCGTTCCTATTGAGTTCGCGTTTGTCA
ATAGGGACTGTTCTGAACTATCTTGTCCACCTGGGACAGAATGTTCCGCG
GATTCTGACGTGCCTAACAGTGCCAAGGTCTGCAGGCTACCGGCGATAGA
AGTGGACTTGTGGAAACCATGCTTTCGAGCAGCCCAATTTCGACTCGTAA
GTTTTCCTGCGTTTAGTGTTTTGCATGTACGAGACCTTCCTTTACTAACA
TTATGTAATTGCGAGCAATGATCACACAGGAGTGTGAGGCTGGTTTACAA
TGTTCTCGAAGCTATCTAGGGAGAGGTGTGAGAGTGTGCCGACCGAAGAG
AGGAATAGGAGGTATATGTGATAATGACGATTCATGTGTTGGAGACCTGG
AGTGCGATCCGTCTTCCAGAGAGAAGCCTTTTGAAAGACGATGCTTTGAC
CCCTCTCTTTCGCTCAATCGTGGAGACTCTTGCAATCCGTATCCTGCGCC
TGAAGATCCGAGGTGTGTGGCCCAAGTCGTCAGGGACCCGAGTTTGCCGC
TCATCAGGGACATTTTCCCTCTTGCATGCTTGCCTAAGAATGGTTCAAAC
GTGTGTCAGAGAGCCGTGGGTTTATTCCGACAATGCTCGACGGAAGAAAA
CATTGCTTGCCAAACAGAAGACCTGGTCTGTAGTGATTTCAATGTCTGTG
TGCCAAAGTGTCAAGTCTAGCCAGTGAACAAAGTTCGTTCTATATCTACA
CGTTGGTCAATTGACTGGCAACAAATTGGAGAGCAATTAAGAATGGTAAT
GTCTTCATTCATCCCTTGATAGTTTGAATAGTACATTGTCGAACGTATTC
GAAACGATCATCTCTGTTGTAGAAACCTCTAGAAGGTTCCAGAATGCAAC
TGGAAACTGCTTTATGTAATAGACGTATGTAGAAGCCTCTTGAAGCTTAT
ATAGAACTCTATGTTTCAAAGGAAAGAACTATCTTGGAACAAAATTATAT
GCGTCTAGAACAACTTAGAAGTGCTTACATAAAAGAACAGGAGAATAGAG
ACTGAGTCGAGAAAAATGAACTCAAGTCAACACTTCACAGAATTATCTGC
GTTCGAGTGTACTTTTATTTATAGATCTCTTCTGACTAAACTACGGTAGT
TGACAGGTTGCCTACTGTATGACACTGTATGACAACGAACGATCATCAAT
CACCGTCAGCTGAGCTGTTTCTCGCCCAGTCGTTCGCTTTGTTTTTCTTT
TTGTGTGTTTTGATAGCACTTTCGTCAACCACACGCTACCCACCGGAGTA
GTAGCGCTCCGGGCCAAAGACCACTGTGCTCAGAAAGTTCGGCTTGCTGC
CCGGTATATGTGGTGTCTTGTCACCCCGAATTCCCACTATACACCATCTT
AA
back to top

Coding sequence (CDS) from alignment at tig00000065_pilon:167441..170092-

>Gchil10257.t1 ID=Gchil10257.t1|Name=Gchil10257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000065_pilon:167441..170092- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTAACATCTTGTTTCCGCTCGTGGCCGTCTTCGTGTCCTTCGC
CTTCGCCAACCCATTCCCACATGCAATCCCGCCTCTCCAGCTCATCACTT
CCTCGCAGTCTTGTCTCCGCGACGTCGAATGCCCGCCGGAGCAATACTGC
AAGGCGCCGATCTCCACACAGAACAATTTCTTTTTCTTCGGATCCGGCTT
GCTGGAAGCTTCTACCTGTGTTCCGCGGCTACCGGAAGGTTCCAACTGCA
CCAGTGTGGGAGACTCGGAGTGTGAGGACGGAACATTCTGCGGCTTCATA
GATGATTCCAATCCGTCGCCGATAACCTGTCTGCGTCAGCTTCCTTCTGG
TGCCAGCTGCGCGCTTTCTGCAACTGATCCCTGTCAGGGAGATCTCGTCT
GCGAACTTGAACCCACGTGCCGTCCGTTCACCTTTGGATTTGCTGGTGAC
TTCTGTCAATTTGATCGCCAATGTCAACAGCAACAAGGCTTCTACTGTCG
TTCCAACTTTAACGAATGCACCGCAAGGAGACCGCCTGGGGGAGTGTGCG
AACTCGAACCGGAGAACTTCGAATGCCAGGGCTTCTGTGTCAGCTCCGGT
ACCTTTGGCGAGAAGCCGGGCGTCTGTCAGCGACTACAAACCGCAGGAGA
GAAGTGTAACGACGACAGGCAGTGCTTGACCATAGCACCTCCATTCCAAA
CATCTCGCACCGTCAATCTTCTCTGTAACAGACCTACGGGCACCACCGGT
ACCTGTGTCCTCGAAACTGATCTCATCCGCGACTTGGGAGCTCCTTGCGA
TCCTACTAACGATACGTGCGATGCTCGAAGAGGATTAAGCTGTCATCATG
AAGGCACCCATGGCAAGTGCGTTCAACGTGCAACGGCCCCTGATTCTTTC
CAGCATTTCTGCACGCCCAACTCTCCACTGAGTAGCTGTCCGCCTGATGA
TTTCGGTAATCTTCGCGAGTGTCGTCGCGCTTTGAATAGCGAGAAGGAAT
TCGAGGGAGTATTCGCGTGTAGAATCCGTCGTCAGGTCGTGCCACTTGGT
AATCCTTGCAATAATGAAGAGTTTGCCGTATGTTCACGGAGGGCCGTTTG
TATGGAAGCCCCGGGAGTTGAGCGACCGACGGGTCGCTTTCCACCGCCAC
CGTTGCGCACCTGCATGAAGATTTTACCGATTGGTGCCCCATGCCCAGAT
CAGTTCCGCTTCAAATGCGAGGACGGATCCTTCTGCGTGAATGGCACTTG
TCAGCGAGCGGAATCCTCCCCAACCGTTCCTATTGAGTTCGCGTTTGTCA
ATAGGGACTGTTCTGAACTATCTTGTCCACCTGGGACAGAATGTTCCGCG
GATTCTGACGTGCCTAACAGTGCCAAGGTCTGCAGGCTACCGGCGATAGA
AGTGGACTTGTGGAAACCATGCTTTCGAGCAGCCCAATTTCGACTCGAGT
GTGAGGCTGGTTTACAATGTTCTCGAAGCTATCTAGGGAGAGGTGTGAGA
GTGTGCCGACCGAAGAGAGGAATAGGAGGTATATGTGATAATGACGATTC
ATGTGTTGGAGACCTGGAGTGCGATCCGTCTTCCAGAGAGAAGCCTTTTG
AAAGACGATGCTTTGACCCCTCTCTTTCGCTCAATCGTGGAGACTCTTGC
AATCCGTATCCTGCGCCTGAAGATCCGAGCACTTTCGTCAACCACACGCT
ACCCACCGGAGTAGTAGCGCTCCGGGCCAAAGACCACTGTGCTCAGAAAG
TTCGGCTTGCTGCCCGGTATATGTGGTGTCTTGTCACCCCGAATTCCCAC
TATACACCATCTTAA
back to top