Gchil10256.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10256.t1
Unique NameGchil10256.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:151184..151828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1394178.AWOO02000016_gene6846
PFAMsAcetyltransf_1
Max annot lvl201174|Actinobacteria
Evalue4.06e-26
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,2I9Y3@201174|Actinobacteria,4ER9I@85012|Streptosporangiales
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10256Gchil10256Gracilaria chilensis NLEC103_M9 malegenetig00000065_pilon 151184..151828 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10256.t1.stop1Gchil10256.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000065_pilon 151184..151186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10256.t1.CDS1Gchil10256.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 151184..151828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10256.t1.exon1Gchil10256.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 151184..151828 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10256.t1.start1Gchil10256.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000065_pilon 151826..151828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10256.t1Gchil10256.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000065_pilon 151184..151828 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10256.t1 ID=Gchil10256.t1|Name=Gchil10256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=215bp
MATTSAAPMRPNGVRSDVKRHHIPHLASTLASAFEDDPLLHYLYGPNVGN
VYENNEAFFSALLRSELRRVPQHTTIHASQDDGCVAIWNHVGHWDHAESL
DFIAAACRIFGTRVVHVANTMKKLKQKHPTEAHMFLSVLGTRKQQQGKGN
GSRVISQMLRQCDRDGVAVYLESSNKNNIPFYEKHRFQVVGDISGLPRDC
PPVAALWRNPCAQL*
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spliced messenger RNA

>Gchil10256.t1 ID=Gchil10256.t1|Name=Gchil10256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000065_pilon:151184..151828- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCACATCCGCCGCCCCCATGCGCCCTAACGGCGTGCGCTCCGA
CGTGAAAAGGCACCACATTCCGCATCTCGCCTCCACGTTGGCATCAGCCT
TCGAAGACGACCCGTTGCTACATTATCTGTACGGCCCAAACGTCGGAAAC
GTCTACGAAAACAATGAAGCTTTCTTTTCCGCTCTTCTTCGTTCAGAGCT
GCGTCGCGTGCCACAACACACCACGATTCACGCGTCGCAAGACGACGGCT
GCGTCGCCATTTGGAATCATGTGGGGCATTGGGATCACGCCGAAAGTCTG
GACTTCATCGCCGCGGCGTGTCGAATTTTCGGAACGCGTGTTGTTCATGT
GGCCAACACGATGAAGAAACTAAAACAGAAACACCCCACAGAGGCGCACA
TGTTCCTGTCCGTGCTCGGAACACGAAAGCAGCAGCAGGGAAAAGGCAAT
GGCAGTAGAGTCATATCGCAAATGTTACGACAGTGCGACCGTGATGGAGT
TGCCGTGTACTTGGAGTCTTCGAACAAGAACAACATTCCGTTTTACGAGA
AGCATCGCTTCCAGGTTGTCGGAGATATCTCCGGCCTTCCACGCGACTGC
CCGCCCGTTGCTGCTCTGTGGCGGAATCCTTGCGCGCAGCTGTAA
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protein sequence of Gchil10256.t1

>Gchil10256.t1 ID=Gchil10256.t1|Name=Gchil10256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=215bp
MATTSAAPMRPNGVRSDVKRHHIPHLASTLASAFEDDPLLHYLYGPNVGN
VYENNEAFFSALLRSELRRVPQHTTIHASQDDGCVAIWNHVGHWDHAESL
DFIAAACRIFGTRVVHVANTMKKLKQKHPTEAHMFLSVLGTRKQQQGKGN
GSRVISQMLRQCDRDGVAVYLESSNKNNIPFYEKHRFQVVGDISGLPRDC
PPVAALWRNPCAQL*
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mRNA from alignment at tig00000065_pilon:151184..151828-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10256.t1 ID=Gchil10256.t1|Name=Gchil10256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000065_pilon:151184..151828- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCACATCCGCCGCCCCCATGCGCCCTAACGGCGTGCGCTCCGA
CGTGAAAAGGCACCACATTCCGCATCTCGCCTCCACGTTGGCATCAGCCT
TCGAAGACGACCCGTTGCTACATTATCTGTACGGCCCAAACGTCGGAAAC
GTCTACGAAAACAATGAAGCTTTCTTTTCCGCTCTTCTTCGTTCAGAGCT
GCGTCGCGTGCCACAACACACCACGATTCACGCGTCGCAAGACGACGGCT
GCGTCGCCATTTGGAATCATGTGGGGCATTGGGATCACGCCGAAAGTCTG
GACTTCATCGCCGCGGCGTGTCGAATTTTCGGAACGCGTGTTGTTCATGT
GGCCAACACGATGAAGAAACTAAAACAGAAACACCCCACAGAGGCGCACA
TGTTCCTGTCCGTGCTCGGAACACGAAAGCAGCAGCAGGGAAAAGGCAAT
GGCAGTAGAGTCATATCGCAAATGTTACGACAGTGCGACCGTGATGGAGT
TGCCGTGTACTTGGAGTCTTCGAACAAGAACAACATTCCGTTTTACGAGA
AGCATCGCTTCCAGGTTGTCGGAGATATCTCCGGCCTTCCACGCGACTGC
CCGCCCGTTGCTGCTCTGTGGCGGAATCCTTGCGCGCAGCTGTAA
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Coding sequence (CDS) from alignment at tig00000065_pilon:151184..151828-

>Gchil10256.t1 ID=Gchil10256.t1|Name=Gchil10256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000065_pilon:151184..151828- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACCACATCCGCCGCCCCCATGCGCCCTAACGGCGTGCGCTCCGA
CGTGAAAAGGCACCACATTCCGCATCTCGCCTCCACGTTGGCATCAGCCT
TCGAAGACGACCCGTTGCTACATTATCTGTACGGCCCAAACGTCGGAAAC
GTCTACGAAAACAATGAAGCTTTCTTTTCCGCTCTTCTTCGTTCAGAGCT
GCGTCGCGTGCCACAACACACCACGATTCACGCGTCGCAAGACGACGGCT
GCGTCGCCATTTGGAATCATGTGGGGCATTGGGATCACGCCGAAAGTCTG
GACTTCATCGCCGCGGCGTGTCGAATTTTCGGAACGCGTGTTGTTCATGT
GGCCAACACGATGAAGAAACTAAAACAGAAACACCCCACAGAGGCGCACA
TGTTCCTGTCCGTGCTCGGAACACGAAAGCAGCAGCAGGGAAAAGGCAAT
GGCAGTAGAGTCATATCGCAAATGTTACGACAGTGCGACCGTGATGGAGT
TGCCGTGTACTTGGAGTCTTCGAACAAGAACAACATTCCGTTTTACGAGA
AGCATCGCTTCCAGGTTGTCGGAGATATCTCCGGCCTTCCACGCGACTGC
CCGCCCGTTGCTGCTCTGTGGCGGAATCCTTGCGCGCAGCTGTAA
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