Gchil10184.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10184.t1
Unique NameGchil10184.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000118_piloncontigtig00000118_pilon:19182..20507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0TGF4
PFAMsDUF273
Max annot lvl2759|Eukaryota
Evalue1.09e-32
EggNOG OGs2E7JM@1|root,2SE55@2759|Eukaryota
DescriptionProtein of unknown function, DUF273
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10184Gchil10184Gracilaria chilensis NLEC103_M9 malegenetig00000118_pilon 19182..20507 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10184.t1.stop1Gchil10184.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000118_pilon 19182..19184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10184.t1.CDS1Gchil10184.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000118_pilon 19182..20507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10184.t1.exon1Gchil10184.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000118_pilon 19182..20507 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10184.t1.start1Gchil10184.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000118_pilon 20505..20507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10184.t1Gchil10184.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000118_pilon 19182..20507 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10184.t1 ID=Gchil10184.t1|Name=Gchil10184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=442bp
MDSKALASAKRFITNPPAAFTGHPPKTVSFYLSFVVMLALLALGFFRQLS
FSSRADSLITQSRVTLVLVSDRKHHVKYASQERSIACYAETHGYDFASLE
PRIHAPTCYNTYQMIQFQKPCTVGKWLLNQPEDSRAVVFDGDVIGGTSNS
SLRQWIENPYDLTYDLAFYERSWNFEVASGNYIVRNTPFSRLFLHHWASF
ETIHPKGYASTDNGAIHLAIVDALALKGRQRCRDLYRALEAPVTNLQPYF
EFVACVKALLGPPRVYEASKPTHLTKKGRKIAEDSNVAGRIVIFPRLFGF
VVDSVVHGLVGANRLHPFHHGWKTDEWQERYLGFKEREKGARCTPFSTNK
TLSPEKMAEKLEASDKYYVHLTGHDFSIVPRWLHVDEDCFKNLWCPPLPT
KPSKWPHGVVAETGKIVAYKYQDPGVDFHNHFLAGLYAGEM*
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spliced messenger RNA

>Gchil10184.t1 ID=Gchil10184.t1|Name=Gchil10184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000118_pilon:19182..20507- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCAAAGCGCTTGCATCCGCAAAACGTTTCATCACCAATCCACC
GGCTGCTTTCACCGGTCATCCCCCGAAAACCGTATCATTCTATTTGTCAT
TTGTTGTAATGCTCGCACTTCTGGCGCTCGGATTTTTTCGACAACTATCG
TTTTCTTCGCGAGCAGACTCTTTGATCACTCAAAGCCGAGTTACTCTGGT
CCTCGTTTCCGATCGCAAGCATCATGTTAAGTATGCGTCACAAGAGCGGT
CTATAGCCTGCTATGCAGAGACGCATGGTTATGATTTTGCCTCTTTGGAG
CCGAGAATCCATGCTCCTACATGTTACAATACGTATCAGATGATCCAATT
TCAAAAGCCGTGCACGGTTGGGAAATGGCTTCTAAATCAACCGGAAGACT
CCCGAGCTGTAGTTTTTGATGGCGATGTCATTGGCGGCACATCTAATTCA
TCTTTACGCCAGTGGATCGAAAACCCGTACGACTTGACTTACGACCTTGC
TTTTTACGAACGGTCTTGGAATTTTGAAGTGGCTTCTGGAAACTACATTG
TTCGAAACACTCCGTTCAGCAGGTTGTTTTTGCATCACTGGGCCAGTTTT
GAAACCATTCATCCCAAGGGATATGCATCCACAGATAATGGAGCTATTCA
CCTGGCCATAGTGGATGCTTTAGCTCTTAAAGGGCGCCAACGCTGCCGTG
ATTTGTACAGAGCCCTTGAGGCTCCTGTGACAAACCTACAGCCCTATTTT
GAATTCGTTGCCTGTGTCAAGGCCTTGCTCGGTCCACCTAGAGTTTATGA
GGCTTCTAAACCTACACATTTAACAAAGAAGGGCCGGAAAATCGCAGAAG
ACTCCAATGTTGCTGGTAGAATTGTCATATTCCCAAGGCTTTTTGGATTT
GTAGTAGACTCTGTTGTTCACGGACTTGTTGGAGCTAACCGGCTACATCC
GTTTCACCACGGCTGGAAGACAGATGAATGGCAAGAAAGATATTTGGGTT
TTAAAGAAAGAGAGAAAGGCGCACGATGTACACCGTTTTCAACAAACAAG
ACACTATCACCAGAAAAGATGGCTGAAAAGCTAGAAGCTTCTGATAAATA
CTACGTTCACCTTACTGGGCATGATTTTAGTATCGTACCGAGGTGGCTGC
ATGTGGACGAAGACTGTTTTAAAAATCTTTGGTGCCCTCCGTTGCCTACA
AAACCAAGCAAATGGCCGCATGGGGTGGTTGCTGAGACCGGGAAAATTGT
TGCGTACAAATATCAAGACCCTGGAGTCGATTTCCATAATCATTTCCTTG
CTGGATTGTACGCAGGGGAGATGTAA
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protein sequence of Gchil10184.t1

>Gchil10184.t1 ID=Gchil10184.t1|Name=Gchil10184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=442bp
MDSKALASAKRFITNPPAAFTGHPPKTVSFYLSFVVMLALLALGFFRQLS
FSSRADSLITQSRVTLVLVSDRKHHVKYASQERSIACYAETHGYDFASLE
PRIHAPTCYNTYQMIQFQKPCTVGKWLLNQPEDSRAVVFDGDVIGGTSNS
SLRQWIENPYDLTYDLAFYERSWNFEVASGNYIVRNTPFSRLFLHHWASF
ETIHPKGYASTDNGAIHLAIVDALALKGRQRCRDLYRALEAPVTNLQPYF
EFVACVKALLGPPRVYEASKPTHLTKKGRKIAEDSNVAGRIVIFPRLFGF
VVDSVVHGLVGANRLHPFHHGWKTDEWQERYLGFKEREKGARCTPFSTNK
TLSPEKMAEKLEASDKYYVHLTGHDFSIVPRWLHVDEDCFKNLWCPPLPT
KPSKWPHGVVAETGKIVAYKYQDPGVDFHNHFLAGLYAGEM*
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mRNA from alignment at tig00000118_pilon:19182..20507-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10184.t1 ID=Gchil10184.t1|Name=Gchil10184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000118_pilon:19182..20507- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCCAAAGCGCTTGCATCCGCAAAACGTTTCATCACCAATCCACC
GGCTGCTTTCACCGGTCATCCCCCGAAAACCGTATCATTCTATTTGTCAT
TTGTTGTAATGCTCGCACTTCTGGCGCTCGGATTTTTTCGACAACTATCG
TTTTCTTCGCGAGCAGACTCTTTGATCACTCAAAGCCGAGTTACTCTGGT
CCTCGTTTCCGATCGCAAGCATCATGTTAAGTATGCGTCACAAGAGCGGT
CTATAGCCTGCTATGCAGAGACGCATGGTTATGATTTTGCCTCTTTGGAG
CCGAGAATCCATGCTCCTACATGTTACAATACGTATCAGATGATCCAATT
TCAAAAGCCGTGCACGGTTGGGAAATGGCTTCTAAATCAACCGGAAGACT
CCCGAGCTGTAGTTTTTGATGGCGATGTCATTGGCGGCACATCTAATTCA
TCTTTACGCCAGTGGATCGAAAACCCGTACGACTTGACTTACGACCTTGC
TTTTTACGAACGGTCTTGGAATTTTGAAGTGGCTTCTGGAAACTACATTG
TTCGAAACACTCCGTTCAGCAGGTTGTTTTTGCATCACTGGGCCAGTTTT
GAAACCATTCATCCCAAGGGATATGCATCCACAGATAATGGAGCTATTCA
CCTGGCCATAGTGGATGCTTTAGCTCTTAAAGGGCGCCAACGCTGCCGTG
ATTTGTACAGAGCCCTTGAGGCTCCTGTGACAAACCTACAGCCCTATTTT
GAATTCGTTGCCTGTGTCAAGGCCTTGCTCGGTCCACCTAGAGTTTATGA
GGCTTCTAAACCTACACATTTAACAAAGAAGGGCCGGAAAATCGCAGAAG
ACTCCAATGTTGCTGGTAGAATTGTCATATTCCCAAGGCTTTTTGGATTT
GTAGTAGACTCTGTTGTTCACGGACTTGTTGGAGCTAACCGGCTACATCC
GTTTCACCACGGCTGGAAGACAGATGAATGGCAAGAAAGATATTTGGGTT
TTAAAGAAAGAGAGAAAGGCGCACGATGTACACCGTTTTCAACAAACAAG
ACACTATCACCAGAAAAGATGGCTGAAAAGCTAGAAGCTTCTGATAAATA
CTACGTTCACCTTACTGGGCATGATTTTAGTATCGTACCGAGGTGGCTGC
ATGTGGACGAAGACTGTTTTAAAAATCTTTGGTGCCCTCCGTTGCCTACA
AAACCAAGCAAATGGCCGCATGGGGTGGTTGCTGAGACCGGGAAAATTGT
TGCGTACAAATATCAAGACCCTGGAGTCGATTTCCATAATCATTTCCTTG
CTGGATTGTACGCAGGGGAGATGTAA
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Coding sequence (CDS) from alignment at tig00000118_pilon:19182..20507-

>Gchil10184.t1 ID=Gchil10184.t1|Name=Gchil10184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000118_pilon:19182..20507- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCCAAAGCGCTTGCATCCGCAAAACGTTTCATCACCAATCCACC
GGCTGCTTTCACCGGTCATCCCCCGAAAACCGTATCATTCTATTTGTCAT
TTGTTGTAATGCTCGCACTTCTGGCGCTCGGATTTTTTCGACAACTATCG
TTTTCTTCGCGAGCAGACTCTTTGATCACTCAAAGCCGAGTTACTCTGGT
CCTCGTTTCCGATCGCAAGCATCATGTTAAGTATGCGTCACAAGAGCGGT
CTATAGCCTGCTATGCAGAGACGCATGGTTATGATTTTGCCTCTTTGGAG
CCGAGAATCCATGCTCCTACATGTTACAATACGTATCAGATGATCCAATT
TCAAAAGCCGTGCACGGTTGGGAAATGGCTTCTAAATCAACCGGAAGACT
CCCGAGCTGTAGTTTTTGATGGCGATGTCATTGGCGGCACATCTAATTCA
TCTTTACGCCAGTGGATCGAAAACCCGTACGACTTGACTTACGACCTTGC
TTTTTACGAACGGTCTTGGAATTTTGAAGTGGCTTCTGGAAACTACATTG
TTCGAAACACTCCGTTCAGCAGGTTGTTTTTGCATCACTGGGCCAGTTTT
GAAACCATTCATCCCAAGGGATATGCATCCACAGATAATGGAGCTATTCA
CCTGGCCATAGTGGATGCTTTAGCTCTTAAAGGGCGCCAACGCTGCCGTG
ATTTGTACAGAGCCCTTGAGGCTCCTGTGACAAACCTACAGCCCTATTTT
GAATTCGTTGCCTGTGTCAAGGCCTTGCTCGGTCCACCTAGAGTTTATGA
GGCTTCTAAACCTACACATTTAACAAAGAAGGGCCGGAAAATCGCAGAAG
ACTCCAATGTTGCTGGTAGAATTGTCATATTCCCAAGGCTTTTTGGATTT
GTAGTAGACTCTGTTGTTCACGGACTTGTTGGAGCTAACCGGCTACATCC
GTTTCACCACGGCTGGAAGACAGATGAATGGCAAGAAAGATATTTGGGTT
TTAAAGAAAGAGAGAAAGGCGCACGATGTACACCGTTTTCAACAAACAAG
ACACTATCACCAGAAAAGATGGCTGAAAAGCTAGAAGCTTCTGATAAATA
CTACGTTCACCTTACTGGGCATGATTTTAGTATCGTACCGAGGTGGCTGC
ATGTGGACGAAGACTGTTTTAAAAATCTTTGGTGCCCTCCGTTGCCTACA
AAACCAAGCAAATGGCCGCATGGGGTGGTTGCTGAGACCGGGAAAATTGT
TGCGTACAAATATCAAGACCCTGGAGTCGATTTCCATAATCATTTCCTTG
CTGGATTGTACGCAGGGGAGATGTAA
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