Gchil10175.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10175.t1
Unique NameGchil10175.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:364204..364878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog82654.Pse7367_2066
PFAMsLaminin_G_3
Max annot lvl1117|Cyanobacteria
Evalue1.52e-25
EggNOG OGsCOG2931@1|root,COG4733@1|root,COG2931@2|Bacteria,COG4733@2|Bacteria,1GFPS@1117|Cyanobacteria,1HHVN@1150|Oscillatoriales
DescriptionConcanavalin A-like lectin/glucanases superfamily
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10175Gchil10175Gracilaria chilensis NLEC103_M9 malegenetig00000222_pilon 364204..364878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10175.t1Gchil10175.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000222_pilon 364204..364878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10175.t1.stop1Gchil10175.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000222_pilon 364204..364206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10175.t1.CDS1Gchil10175.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 364204..364626 -
Gchil10175.t1.CDS2Gchil10175.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000222_pilon 364732..364878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10175.t1.exon1Gchil10175.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 364204..364626 -
Gchil10175.t1.exon2Gchil10175.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000222_pilon 364732..364878 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10175.t1.intron1Gchil10175.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000222_pilon 364627..364731 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10175.t1.start1Gchil10175.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000222_pilon 364876..364878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10175.t1 ID=Gchil10175.t1|Name=Gchil10175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=190bp
MLTVSTGGGFEEILETNQLNPVLGRRALNGNADLALGQSSTADNFALPQG
TLDGRVGYNANGEIVLDCDYAGAASFGRYSYCKPKEAYRIEGRIKRDEER
LKRYYAEYDVCMGSRAGAFIGSAAGAAASLMISGAGLFIAAKALSCGMNV
FNQASKPVNLAGKFAKRDMVNTYVWPADGGLFSESTEST*
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spliced messenger RNA

>Gchil10175.t1 ID=Gchil10175.t1|Name=Gchil10175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000222_pilon:364204..364878- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACGGTCTCTACTGGAGGCGGCTTTGAAGAAATACTGGAAACTAA
TCAACTCAATCCCGTGTTGGGGAGACGGGCCCTTAACGGAAATGCCGATC
TGGCTCTTGGGCAGTCCAGTACAGCCGATAATTTCGCTTTGCCCCAGGGT
ACCCTTGACGGAAGGGTTGGATATAATGCTAACGGAGAAATAGTTCTGGA
CTGTGATTACGCAGGAGCAGCTTCATTTGGAAGGTACAGCTATTGCAAAC
CTAAGGAAGCGTACCGCATAGAAGGGCGTATAAAGCGGGATGAAGAACGG
TTGAAGAGGTACTACGCTGAATATGATGTATGTATGGGATCAAGAGCAGG
GGCATTTATTGGATCTGCCGCCGGTGCGGCTGCTTCGTTGATGATCTCTG
GAGCAGGTCTATTCATCGCCGCTAAAGCTCTTAGTTGCGGAATGAATGTT
TTCAATCAAGCTTCGAAACCTGTCAATCTTGCAGGGAAATTTGCTAAGCG
CGACATGGTTAACACGTATGTGTGGCCTGCCGATGGAGGGTTATTTTCCG
AGTCAACTGAAAGCACATAG
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protein sequence of Gchil10175.t1

>Gchil10175.t1 ID=Gchil10175.t1|Name=Gchil10175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=190bp
MLTVSTGGGFEEILETNQLNPVLGRRALNGNADLALGQSSTADNFALPQG
TLDGRVGYNANGEIVLDCDYAGAASFGRYSYCKPKEAYRIEGRIKRDEER
LKRYYAEYDVCMGSRAGAFIGSAAGAAASLMISGAGLFIAAKALSCGMNV
FNQASKPVNLAGKFAKRDMVNTYVWPADGGLFSESTEST*
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mRNA from alignment at tig00000222_pilon:364204..364878-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10175.t1 ID=Gchil10175.t1|Name=Gchil10175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000222_pilon:364204..364878- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGACGGTCTCTACTGGAGGCGGCTTTGAAGAAATACTGGAAACTAA
TCAACTCAATCCCGTGTTGGGGAGACGGGCCCTTAACGGAAATGCCGATC
TGGCTCTTGGGCAGTCCAGTACAGCCGATAATTTCGCTTTGCCCCAGGTT
CATAATGGAGCACTGGTCTTCTTGCATATGTTACCGAATACAGACATCCC
GCAAGATTAGAATATTATTTGGTTTCCCATCAACAACCGATACACCAAAC
AGGGTACCCTTGACGGAAGGGTTGGATATAATGCTAACGGAGAAATAGTT
CTGGACTGTGATTACGCAGGAGCAGCTTCATTTGGAAGGTACAGCTATTG
CAAACCTAAGGAAGCGTACCGCATAGAAGGGCGTATAAAGCGGGATGAAG
AACGGTTGAAGAGGTACTACGCTGAATATGATGTATGTATGGGATCAAGA
GCAGGGGCATTTATTGGATCTGCCGCCGGTGCGGCTGCTTCGTTGATGAT
CTCTGGAGCAGGTCTATTCATCGCCGCTAAAGCTCTTAGTTGCGGAATGA
ATGTTTTCAATCAAGCTTCGAAACCTGTCAATCTTGCAGGGAAATTTGCT
AAGCGCGACATGGTTAACACGTATGTGTGGCCTGCCGATGGAGGGTTATT
TTCCGAGTCAACTGAAAGCACATAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:364204..364878-

>Gchil10175.t1 ID=Gchil10175.t1|Name=Gchil10175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000222_pilon:364204..364878- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGACGGTCTCTACTGGAGGCGGCTTTGAAGAAATACTGGAAACTAA
TCAACTCAATCCCGTGTTGGGGAGACGGGCCCTTAACGGAAATGCCGATC
TGGCTCTTGGGCAGTCCAGTACAGCCGATAATTTCGCTTTGCCCCAGGGT
ACCCTTGACGGAAGGGTTGGATATAATGCTAACGGAGAAATAGTTCTGGA
CTGTGATTACGCAGGAGCAGCTTCATTTGGAAGGTACAGCTATTGCAAAC
CTAAGGAAGCGTACCGCATAGAAGGGCGTATAAAGCGGGATGAAGAACGG
TTGAAGAGGTACTACGCTGAATATGATGTATGTATGGGATCAAGAGCAGG
GGCATTTATTGGATCTGCCGCCGGTGCGGCTGCTTCGTTGATGATCTCTG
GAGCAGGTCTATTCATCGCCGCTAAAGCTCTTAGTTGCGGAATGAATGTT
TTCAATCAAGCTTCGAAACCTGTCAATCTTGCAGGGAAATTTGCTAAGCG
CGACATGGTTAACACGTATGTGTGGCCTGCCGATGGAGGGTTATTTTCCG
AGTCAACTGAAAGCACATAG
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