Gchil10172.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10172.t1
Unique Name	Gchil10172.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	199

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:205675..206271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706385.1
Preferred name	GTPBP1
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
GOs	GO:0000166,GO:0000177,GO:0000178,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010604,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0023052,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0042278,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055086,GO:0060255,GO:0061013,GO:0061014,GO:0065007,GO:0071704,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901657,GO:1902494,GO:1903311,GO:1903313,GO:1905354
Evalue	4.53e-76
EggNOG OGs	COG5258@1\|root,KOG0463@2759\|Eukaryota
Description	GTP metabolic process
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10172	Gchil10172	Gracilaria chilensis NLEC103_M9 male	gene	tig00000222_pilon 205675..206271 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10172.t1.stop1	Gchil10172.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000222_pilon 205675..205677 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10172.t1.CDS1	Gchil10172.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000222_pilon 205675..206271 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10172.t1.exon1	Gchil10172.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000222_pilon 205675..206271 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10172.t1.start1	Gchil10172.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000222_pilon 206269..206271 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10172.t1	Gchil10172.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000222_pilon 205675..206271 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:205675..206271-
coding sequence from alignment at tig00000222_pilon:205675..206271-

mRNA sequence

>Gchil10172.t1 ID=Gchil10172.t1|Name=Gchil10172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=199bp
MESGRTSTVSQAIIGFDSTGSIVNYTDVRHLTWSDVVEKSPKVLAFFDLA
GHECYLKANVSGLAAHAPDYCMLVVRANMGVLRMNKEHLAIALALNVPVC
IVVTKTDLAPDQIYSHTLTTLQRIFKSPSAGRKHPVLVRGIEEVTLAAQN
IINDRIVPIFSISNVTGEGLDLLRAFLNIVPSRRNWRQYMGEPQDTQP*

spliced messenger RNA

>Gchil10172.t1 ID=Gchil10172.t1|Name=Gchil10172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000222_pilon:205675..206271- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCGGCCGCACTTCAACAGTATCTCAAGCCATAATTGGCTTCGA
TTCCACCGGTTCGATTGTAAACTACACCGACGTGCGTCATCTCACCTGGT
CCGATGTCGTCGAAAAGTCGCCCAAGGTTCTAGCTTTCTTCGACCTTGCA
GGTCACGAATGCTACCTCAAGGCCAACGTATCCGGCCTCGCAGCCCATGC
TCCAGACTATTGTATGCTTGTCGTAAGGGCAAACATGGGCGTTTTGCGCA
TGAACAAAGAGCATCTGGCTATCGCCCTTGCGCTGAACGTACCAGTGTGC
ATAGTTGTGACCAAGACTGATCTAGCTCCGGACCAGATTTACAGCCACAC
ACTCACAACATTACAACGTATATTCAAGAGTCCAAGCGCTGGAAGAAAGC
ACCCCGTCCTTGTCAGGGGCATAGAAGAGGTCACGCTTGCCGCTCAGAAC
ATCATCAATGATCGCATTGTGCCCATTTTCTCCATTTCCAATGTTACAGG
TGAAGGTCTCGATTTGTTACGAGCCTTCTTGAATATCGTACCATCACGTC
GGAATTGGCGCCAGTACATGGGTGAGCCCCAAGACACACAGCCGTAA

protein sequence of Gchil10172.t1

>Gchil10172.t1 ID=Gchil10172.t1|Name=Gchil10172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=199bp
MESGRTSTVSQAIIGFDSTGSIVNYTDVRHLTWSDVVEKSPKVLAFFDLA
GHECYLKANVSGLAAHAPDYCMLVVRANMGVLRMNKEHLAIALALNVPVC
IVVTKTDLAPDQIYSHTLTTLQRIFKSPSAGRKHPVLVRGIEEVTLAAQN
IINDRIVPIFSISNVTGEGLDLLRAFLNIVPSRRNWRQYMGEPQDTQP*

mRNA from alignment at tig00000222_pilon:205675..206271-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10172.t1 ID=Gchil10172.t1|Name=Gchil10172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000222_pilon:205675..206271- (Gracilaria chilensis NLEC103_M9 male)
ATGGAATCCGGCCGCACTTCAACAGTATCTCAAGCCATAATTGGCTTCGA
TTCCACCGGTTCGATTGTAAACTACACCGACGTGCGTCATCTCACCTGGT
CCGATGTCGTCGAAAAGTCGCCCAAGGTTCTAGCTTTCTTCGACCTTGCA
GGTCACGAATGCTACCTCAAGGCCAACGTATCCGGCCTCGCAGCCCATGC
TCCAGACTATTGTATGCTTGTCGTAAGGGCAAACATGGGCGTTTTGCGCA
TGAACAAAGAGCATCTGGCTATCGCCCTTGCGCTGAACGTACCAGTGTGC
ATAGTTGTGACCAAGACTGATCTAGCTCCGGACCAGATTTACAGCCACAC
ACTCACAACATTACAACGTATATTCAAGAGTCCAAGCGCTGGAAGAAAGC
ACCCCGTCCTTGTCAGGGGCATAGAAGAGGTCACGCTTGCCGCTCAGAAC
ATCATCAATGATCGCATTGTGCCCATTTTCTCCATTTCCAATGTTACAGG
TGAAGGTCTCGATTTGTTACGAGCCTTCTTGAATATCGTACCATCACGTC
GGAATTGGCGCCAGTACATGGGTGAGCCCCAAGACACACAGCCGTAA

Coding sequence (CDS) from alignment at tig00000222_pilon:205675..206271-

>Gchil10172.t1 ID=Gchil10172.t1|Name=Gchil10172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000222_pilon:205675..206271- (Gracilaria chilensis NLEC103_M9 male)
ATGGAATCCGGCCGCACTTCAACAGTATCTCAAGCCATAATTGGCTTCGA
TTCCACCGGTTCGATTGTAAACTACACCGACGTGCGTCATCTCACCTGGT
CCGATGTCGTCGAAAAGTCGCCCAAGGTTCTAGCTTTCTTCGACCTTGCA
GGTCACGAATGCTACCTCAAGGCCAACGTATCCGGCCTCGCAGCCCATGC
TCCAGACTATTGTATGCTTGTCGTAAGGGCAAACATGGGCGTTTTGCGCA
TGAACAAAGAGCATCTGGCTATCGCCCTTGCGCTGAACGTACCAGTGTGC
ATAGTTGTGACCAAGACTGATCTAGCTCCGGACCAGATTTACAGCCACAC
ACTCACAACATTACAACGTATATTCAAGAGTCCAAGCGCTGGAAGAAAGC
ACCCCGTCCTTGTCAGGGGCATAGAAGAGGTCACGCTTGCCGCTCAGAAC
ATCATCAATGATCGCATTGTGCCCATTTTCTCCATTTCCAATGTTACAGG
TGAAGGTCTCGATTTGTTACGAGCCTTCTTGAATATCGTACCATCACGTC
GGAATTGGCGCCAGTACATGGGTGAGCCCCAAGACACACAGCCGTAA