Gchil10154.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10154.t1
Unique NameGchil10154.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length633
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1456890..1459530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10154Gchil10154Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1456890..1459530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10154.t1Gchil10154.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1456890..1459530 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10154.t1.stop1Gchil10154.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1456890..1456892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10154.t1.CDS1Gchil10154.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1456890..1457676 -
Gchil10154.t1.CDS2Gchil10154.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1458419..1459530 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10154.t1.exon1Gchil10154.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1456890..1457676 -
Gchil10154.t1.exon2Gchil10154.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1458419..1459530 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10154.t1.intron1Gchil10154.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1457677..1458418 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10154.t1.start1Gchil10154.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1459528..1459530 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10154.t1 ID=Gchil10154.t1|Name=Gchil10154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp
METWVNSSDTRVMTTHELSTKTTPDKKLKISAKLFFDFLPGDVNYTVAVS
TQTGGGQQKLYTIQLAHSVYGAVFFDDKNGKIQVISGDYGVGYNMSRHVD
LSDEPFRVKWMVHVAEGTELEPSIEVVGGRKDRAILDEEDVVLDQQGLVM
MARPFRTGSAMVVIRAENVEVDGEQFETAIAVNIADTDADEADVVLVQKG
VQKVVMGGNGSVEVAMSMLNVKDASKLELVLDDSVLGAVVEESNVTGATE
QRIVFRGRARGGKFRARVRVRVRVGGGASEGKEAVSLYKTFVWIGRAGER
ERGEGVSVVGIVGIVFGCVAVGVAALMGRVVWARRRCKLGEMEHGESEDA
VWRGWFGADEGAETEEVVRDSGGGTGGDVVGTVCETTGQCGTGLYCLGEL
GVKKCVPGKALGMECGPDPWWGCQPGLYCLGSGHEKKCAVGKGPGMECGP
DPFWSCAPPNHCLGGGNYTTKCVPGKGLGMECGLDPFWSCAPPNYCLGSG
DNFKCVPGKAAGMECGAEPWWSCAPPLQCLGPAGAKKCAPGKALGMECGP
DPWWTCAPPLACAGGRCRRPVRLGMPCASADVTCARGLQCAGEAAHSRAY
CVVPRALGQSCGWDDYWPCARALRCVSNVCVV*
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spliced messenger RNA

>Gchil10154.t1 ID=Gchil10154.t1|Name=Gchil10154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00004442_pilon:1456890..1459530- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACGTGGGTAAATTCGTCGGACACACGCGTGATGACAACGCATGA
GCTGAGCACAAAGACAACGCCAGACAAAAAGCTGAAAATATCAGCCAAGC
TTTTCTTTGACTTTCTTCCAGGCGACGTAAATTACACGGTAGCCGTATCG
ACGCAGACGGGCGGCGGACAGCAAAAGTTGTACACGATACAACTTGCGCA
TTCGGTGTATGGGGCGGTGTTCTTCGACGACAAAAACGGCAAAATACAAG
TGATCTCGGGCGATTATGGGGTGGGGTATAACATGAGTCGACACGTGGAC
TTGAGTGACGAGCCGTTTCGGGTGAAATGGATGGTGCACGTGGCGGAGGG
CACCGAGCTGGAGCCGAGCATCGAGGTGGTGGGCGGGCGGAAAGACAGGG
CGATACTCGACGAGGAGGACGTGGTTTTGGACCAACAAGGGCTGGTGATG
ATGGCGCGTCCGTTCCGCACAGGGTCTGCCATGGTGGTGATTCGCGCAGA
GAACGTGGAGGTGGATGGGGAGCAGTTTGAAACGGCGATTGCGGTGAACA
TTGCGGACACGGACGCGGATGAAGCGGACGTGGTGTTGGTTCAGAAGGGG
GTGCAAAAGGTGGTGATGGGAGGAAACGGGAGTGTGGAGGTGGCGATGAG
CATGCTGAACGTGAAGGACGCATCCAAGCTGGAGCTGGTGTTGGACGACA
GCGTACTGGGCGCAGTGGTTGAGGAAAGCAATGTGACGGGGGCGACGGAA
CAGCGCATCGTGTTCAGAGGGCGTGCGCGAGGCGGCAAGTTTAGGGCGCG
TGTGCGGGTGCGGGTGCGGGTGGGCGGCGGCGCATCGGAAGGCAAGGAGG
CGGTTTCACTGTACAAAACGTTTGTGTGGATCGGGAGAGCAGGCGAGCGT
GAGAGGGGAGAAGGAGTGAGTGTGGTGGGGATTGTGGGTATTGTTTTCGG
GTGCGTGGCGGTGGGGGTTGCGGCACTGATGGGGCGTGTAGTGTGGGCGA
GGCGGAGGTGCAAGTTGGGTGAGATGGAGCACGGCGAGAGCGAGGACGCG
GTGTGGAGGGGGTGGTTTGGTGCGGATGAGGGCGCAGAGACGGAGGAGGT
GGTGCGCGACAGCGGCGGGGGGACGGGCGGCGACGTGGTGGGCACGGTGT
GCGAGACGACGGGGCAGTGTGGCACAGGGCTGTATTGTCTGGGCGAACTG
GGCGTGAAGAAGTGCGTACCGGGCAAGGCGTTGGGCATGGAGTGCGGCCC
CGACCCGTGGTGGGGATGCCAACCGGGGCTGTACTGCCTAGGCAGCGGGC
ACGAGAAGAAGTGCGCCGTGGGCAAGGGGCCGGGCATGGAGTGCGGGCCG
GACCCGTTCTGGAGCTGCGCGCCGCCAAACCACTGCCTGGGCGGCGGCAA
CTACACGACCAAGTGCGTGCCGGGCAAGGGGCTGGGCATGGAGTGCGGGC
TGGACCCGTTCTGGAGCTGCGCGCCGCCCAATTACTGTCTGGGCTCGGGC
GACAACTTCAAGTGCGTTCCGGGCAAGGCGGCGGGCATGGAGTGCGGCGC
CGAGCCGTGGTGGAGCTGCGCGCCGCCGCTGCAGTGCCTGGGGCCGGCCG
GCGCGAAGAAGTGCGCGCCGGGCAAGGCGCTGGGCATGGAGTGTGGCCCG
GACCCGTGGTGGACGTGCGCGCCGCCGCTGGCGTGCGCCGGCGGGCGCTG
TCGCCGCCCGGTGCGCCTCGGCATGCCGTGCGCCTCCGCCGACGTGACGT
GCGCGCGCGGGCTGCAGTGCGCCGGCGAGGCGGCGCACTCGCGCGCCTAC
TGCGTCGTCCCGCGCGCGCTCGGCCAGTCGTGCGGCTGGGACGACTACTG
GCCGTGTGCGCGCGCTCTCCGCTGCGTGTCCAACGTGTGCGTCGTGTAG
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protein sequence of Gchil10154.t1

>Gchil10154.t1 ID=Gchil10154.t1|Name=Gchil10154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=633bp
METWVNSSDTRVMTTHELSTKTTPDKKLKISAKLFFDFLPGDVNYTVAVS
TQTGGGQQKLYTIQLAHSVYGAVFFDDKNGKIQVISGDYGVGYNMSRHVD
LSDEPFRVKWMVHVAEGTELEPSIEVVGGRKDRAILDEEDVVLDQQGLVM
MARPFRTGSAMVVIRAENVEVDGEQFETAIAVNIADTDADEADVVLVQKG
VQKVVMGGNGSVEVAMSMLNVKDASKLELVLDDSVLGAVVEESNVTGATE
QRIVFRGRARGGKFRARVRVRVRVGGGASEGKEAVSLYKTFVWIGRAGER
ERGEGVSVVGIVGIVFGCVAVGVAALMGRVVWARRRCKLGEMEHGESEDA
VWRGWFGADEGAETEEVVRDSGGGTGGDVVGTVCETTGQCGTGLYCLGEL
GVKKCVPGKALGMECGPDPWWGCQPGLYCLGSGHEKKCAVGKGPGMECGP
DPFWSCAPPNHCLGGGNYTTKCVPGKGLGMECGLDPFWSCAPPNYCLGSG
DNFKCVPGKAAGMECGAEPWWSCAPPLQCLGPAGAKKCAPGKALGMECGP
DPWWTCAPPLACAGGRCRRPVRLGMPCASADVTCARGLQCAGEAAHSRAY
CVVPRALGQSCGWDDYWPCARALRCVSNVCVV*
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mRNA from alignment at tig00004442_pilon:1456890..1459530-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10154.t1 ID=Gchil10154.t1|Name=Gchil10154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2641bp|location=Sequence derived from alignment at tig00004442_pilon:1456890..1459530- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACGTGGGTAAATTCGTCGGACACACGCGTGATGACAACGCATGA
GCTGAGCACAAAGACAACGCCAGACAAAAAGCTGAAAATATCAGCCAAGC
TTTTCTTTGACTTTCTTCCAGGCGACGTAAATTACACGGTAGCCGTATCG
ACGCAGACGGGCGGCGGACAGCAAAAGTTGTACACGATACAACTTGCGCA
TTCGGTGTATGGGGCGGTGTTCTTCGACGACAAAAACGGCAAAATACAAG
TGATCTCGGGCGATTATGGGGTGGGGTATAACATGAGTCGACACGTGGAC
TTGAGTGACGAGCCGTTTCGGGTGAAATGGATGGTGCACGTGGCGGAGGG
CACCGAGCTGGAGCCGAGCATCGAGGTGGTGGGCGGGCGGAAAGACAGGG
CGATACTCGACGAGGAGGACGTGGTTTTGGACCAACAAGGGCTGGTGATG
ATGGCGCGTCCGTTCCGCACAGGGTCTGCCATGGTGGTGATTCGCGCAGA
GAACGTGGAGGTGGATGGGGAGCAGTTTGAAACGGCGATTGCGGTGAACA
TTGCGGACACGGACGCGGATGAAGCGGACGTGGTGTTGGTTCAGAAGGGG
GTGCAAAAGGTGGTGATGGGAGGAAACGGGAGTGTGGAGGTGGCGATGAG
CATGCTGAACGTGAAGGACGCATCCAAGCTGGAGCTGGTGTTGGACGACA
GCGTACTGGGCGCAGTGGTTGAGGAAAGCAATGTGACGGGGGCGACGGAA
CAGCGCATCGTGTTCAGAGGGCGTGCGCGAGGCGGCAAGTTTAGGGCGCG
TGTGCGGGTGCGGGTGCGGGTGGGCGGCGGCGCATCGGAAGGCAAGGAGG
CGGTTTCACTGTACAAAACGTTTGTGTGGATCGGGAGAGCAGGCGAGCGT
GAGAGGGGAGAAGGAGTGAGTGTGGTGGGGATTGTGGGTATTGTTTTCGG
GTGCGTGGCGGTGGGGGTTGCGGCACTGATGGGGCGTGTAGTGTGGGCGA
GGCGGAGGTGCAAGTTGGGTGAGATGGAGCACGGCGAGAGCGAGGACGCG
GTGTGGAGGGGGTGGTTTGGTGCGGATGAGGGCGCAGAGACGGAGGAGGT
GGTGCGCGACAGGTACGGGCGAGGCGGGCAGGCGGAGGTGTGAGGATGTG
TAATGGGGTGATATGTTATGTTGATATAGAGTAGAGATTGTAGGTTAAGA
TAAAGAAGCAAGTTTGGAAGGTACGGACGGTATGTACTGGAATGATAGAT
GGGGGAAATTTACGATACGAAGGGTAAGGCGGAAGACGCGGGGAGTGAAG
CGGCAAATGCTTGGCTGAAAGCAAGCAACCGTAGCAATGTACTCGGTATC
TACGCAGGTAGGTTAAATTACTGGCAGAGAAACAACGAGTCAAATACAGG
GACGACAGTGGAGCGCACGTGAGATAAATGCTTGTACTCAAACATGAGAC
GCGGCGCGACGAGACGTTACGACAAGCAGGCGCGAGCGAGCGCCACGTGG
ACGGGGGGGCTTGAGAGTGACAATGACGGCGGCAGCTATGGGCGACGACG
TGGCGATGCGAATGGTGTTGCGACGACGACAAAAACGCGCCATGACGCGC
ACAAAGAGCGACACGCGATGTTTGTCTCGCGTAACGACTCGCTCGGGCTT
ACACACGGTGCGTGGAAGAATGATGGCATTGTTTCAACGTGGCGCGTGGT
GTGGCGTGAGGCGGCGGTGGATCGCTATTTAAGCGTCTTGACTGCTACCG
TTCGCGCATGCGGAAAGAAAGTAGACGTCGATGAAAGTTTATGCTACGAC
GATGATGCTGAGCGCCGCTGTGACGTGGGCGCTGTGCGCGGTGGCGGCCG
GCAGCGGCGGGGGGACGGGCGGCGACGTGGTGGGCACGGTGTGCGAGACG
ACGGGGCAGTGTGGCACAGGGCTGTATTGTCTGGGCGAACTGGGCGTGAA
GAAGTGCGTACCGGGCAAGGCGTTGGGCATGGAGTGCGGCCCCGACCCGT
GGTGGGGATGCCAACCGGGGCTGTACTGCCTAGGCAGCGGGCACGAGAAG
AAGTGCGCCGTGGGCAAGGGGCCGGGCATGGAGTGCGGGCCGGACCCGTT
CTGGAGCTGCGCGCCGCCAAACCACTGCCTGGGCGGCGGCAACTACACGA
CCAAGTGCGTGCCGGGCAAGGGGCTGGGCATGGAGTGCGGGCTGGACCCG
TTCTGGAGCTGCGCGCCGCCCAATTACTGTCTGGGCTCGGGCGACAACTT
CAAGTGCGTTCCGGGCAAGGCGGCGGGCATGGAGTGCGGCGCCGAGCCGT
GGTGGAGCTGCGCGCCGCCGCTGCAGTGCCTGGGGCCGGCCGGCGCGAAG
AAGTGCGCGCCGGGCAAGGCGCTGGGCATGGAGTGTGGCCCGGACCCGTG
GTGGACGTGCGCGCCGCCGCTGGCGTGCGCCGGCGGGCGCTGTCGCCGCC
CGGTGCGCCTCGGCATGCCGTGCGCCTCCGCCGACGTGACGTGCGCGCGC
GGGCTGCAGTGCGCCGGCGAGGCGGCGCACTCGCGCGCCTACTGCGTCGT
CCCGCGCGCGCTCGGCCAGTCGTGCGGCTGGGACGACTACTGGCCGTGTG
CGCGCGCTCTCCGCTGCGTGTCCAACGTGTGCGTCGTGTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:1456890..1459530-

>Gchil10154.t1 ID=Gchil10154.t1|Name=Gchil10154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1899bp|location=Sequence derived from alignment at tig00004442_pilon:1456890..1459530- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACGTGGGTAAATTCGTCGGACACACGCGTGATGACAACGCATGA
GCTGAGCACAAAGACAACGCCAGACAAAAAGCTGAAAATATCAGCCAAGC
TTTTCTTTGACTTTCTTCCAGGCGACGTAAATTACACGGTAGCCGTATCG
ACGCAGACGGGCGGCGGACAGCAAAAGTTGTACACGATACAACTTGCGCA
TTCGGTGTATGGGGCGGTGTTCTTCGACGACAAAAACGGCAAAATACAAG
TGATCTCGGGCGATTATGGGGTGGGGTATAACATGAGTCGACACGTGGAC
TTGAGTGACGAGCCGTTTCGGGTGAAATGGATGGTGCACGTGGCGGAGGG
CACCGAGCTGGAGCCGAGCATCGAGGTGGTGGGCGGGCGGAAAGACAGGG
CGATACTCGACGAGGAGGACGTGGTTTTGGACCAACAAGGGCTGGTGATG
ATGGCGCGTCCGTTCCGCACAGGGTCTGCCATGGTGGTGATTCGCGCAGA
GAACGTGGAGGTGGATGGGGAGCAGTTTGAAACGGCGATTGCGGTGAACA
TTGCGGACACGGACGCGGATGAAGCGGACGTGGTGTTGGTTCAGAAGGGG
GTGCAAAAGGTGGTGATGGGAGGAAACGGGAGTGTGGAGGTGGCGATGAG
CATGCTGAACGTGAAGGACGCATCCAAGCTGGAGCTGGTGTTGGACGACA
GCGTACTGGGCGCAGTGGTTGAGGAAAGCAATGTGACGGGGGCGACGGAA
CAGCGCATCGTGTTCAGAGGGCGTGCGCGAGGCGGCAAGTTTAGGGCGCG
TGTGCGGGTGCGGGTGCGGGTGGGCGGCGGCGCATCGGAAGGCAAGGAGG
CGGTTTCACTGTACAAAACGTTTGTGTGGATCGGGAGAGCAGGCGAGCGT
GAGAGGGGAGAAGGAGTGAGTGTGGTGGGGATTGTGGGTATTGTTTTCGG
GTGCGTGGCGGTGGGGGTTGCGGCACTGATGGGGCGTGTAGTGTGGGCGA
GGCGGAGGTGCAAGTTGGGTGAGATGGAGCACGGCGAGAGCGAGGACGCG
GTGTGGAGGGGGTGGTTTGGTGCGGATGAGGGCGCAGAGACGGAGGAGGT
GGTGCGCGACAGCGGCGGGGGGACGGGCGGCGACGTGGTGGGCACGGTGT
GCGAGACGACGGGGCAGTGTGGCACAGGGCTGTATTGTCTGGGCGAACTG
GGCGTGAAGAAGTGCGTACCGGGCAAGGCGTTGGGCATGGAGTGCGGCCC
CGACCCGTGGTGGGGATGCCAACCGGGGCTGTACTGCCTAGGCAGCGGGC
ACGAGAAGAAGTGCGCCGTGGGCAAGGGGCCGGGCATGGAGTGCGGGCCG
GACCCGTTCTGGAGCTGCGCGCCGCCAAACCACTGCCTGGGCGGCGGCAA
CTACACGACCAAGTGCGTGCCGGGCAAGGGGCTGGGCATGGAGTGCGGGC
TGGACCCGTTCTGGAGCTGCGCGCCGCCCAATTACTGTCTGGGCTCGGGC
GACAACTTCAAGTGCGTTCCGGGCAAGGCGGCGGGCATGGAGTGCGGCGC
CGAGCCGTGGTGGAGCTGCGCGCCGCCGCTGCAGTGCCTGGGGCCGGCCG
GCGCGAAGAAGTGCGCGCCGGGCAAGGCGCTGGGCATGGAGTGTGGCCCG
GACCCGTGGTGGACGTGCGCGCCGCCGCTGGCGTGCGCCGGCGGGCGCTG
TCGCCGCCCGGTGCGCCTCGGCATGCCGTGCGCCTCCGCCGACGTGACGT
GCGCGCGCGGGCTGCAGTGCGCCGGCGAGGCGGCGCACTCGCGCGCCTAC
TGCGTCGTCCCGCGCGCGCTCGGCCAGTCGTGCGGCTGGGACGACTACTG
GCCGTGTGCGCGCGCTCTCCGCTGCGTGTCCAACGTGTGCGTCGTGTAG
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