Gchil10147.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10147.t1
Unique Name	Gchil10147.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1323026..1324495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	489825.LYNGBM3L_44830
PFAMs	TauD
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01331
KEGG ko	ko:K03119,ko:K22303
KEGG Reaction	R05320
KEGG Pathway	ko00430,ko00920,map00430,map00920
Evalue	2.79e-80
EggNOG OGs	COG2175@1\|root,COG2175@2\|Bacteria,1G9GI@1117\|Cyanobacteria,1HCAY@1150\|Oscillatoriales
EC	1.14.11.17
Description	Taurine catabolism dioxygenase TauD, TfdA family
COG category	Q
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10147	Gchil10147	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1323026..1324495 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10147.t1.start1	Gchil10147.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1323026..1323028 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10147.t1.CDS1	Gchil10147.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1323026..1324495 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10147.t1.exon1	Gchil10147.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1323026..1324495 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10147.t1.stop1	Gchil10147.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1324493..1324495 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10147.t1	Gchil10147.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1323026..1324495 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1323026..1324495+
coding sequence from alignment at tig00004442_pilon:1323026..1324495+

mRNA sequence

>Gchil10147.t1 ID=Gchil10147.t1|Name=Gchil10147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=490bp
METTQQLHISTLKPFGVSIRNLDVNSDAHLLQIRKTLPQNGVIVLPAHSE
APGSPLLHHHESLTKLAMLFGKLETTHPINKNVEDSHVQILETMGQTGNI
PDSWQFHADMTWRVSPTFASVLCGKLIPPEGGDTCFVETEKMYRRLSPYL
QEQLSQLTFVNLLSKSYAISTLKQKAEMVGIHPGVIAHPVSGRPCLFVNE
NTTAGSLEMEDEKTEKLLKQIFSEVYSNEHVLCHTWKENDVVIWDNFATQ
HLARKDYVDLRRMYRATAENPLYRLERYVDDRGEKEAKQTLGSLFGRKDV
QQAYSEIAYWYDHDMNICGYRLPSLAVDVLCQEIDRMNMKANCRILDVAA
GTGQNALLLMRDKMTEIEALDICDKMLSEARRKALYRAYYVADANEKLDL
RPGSFDIAMCVGGVEPNHIKASSVIGEMVKVVREGGLVLLTVREHDKDSM
KEIERLVSADKAKVVRQETGNGVSALGEIRHCIMVLRVL*

spliced messenger RNA

>Gchil10147.t1 ID=Gchil10147.t1|Name=Gchil10147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00004442_pilon:1323026..1324495+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACTACGCAACAACTCCATATCTCTACGCTAAAACCGTTTGGAGT
TAGCATTCGCAACCTTGATGTGAATTCTGACGCCCATCTTCTCCAGATTC
GTAAAACGCTCCCACAAAACGGCGTCATCGTTCTGCCTGCCCATTCTGAG
GCTCCCGGATCCCCGTTGCTACATCACCATGAAAGTCTAACCAAGCTTGC
CATGCTCTTTGGAAAGCTTGAGACCACGCACCCCATCAACAAAAACGTTG
AAGACTCCCATGTGCAGATTTTGGAGACCATGGGACAGACCGGAAATATT
CCTGACTCGTGGCAGTTCCATGCTGACATGACTTGGAGAGTTAGCCCTAC
CTTCGCCAGCGTCCTCTGCGGAAAGCTCATTCCCCCGGAAGGTGGTGATA
CGTGCTTCGTAGAAACAGAGAAGATGTATCGAAGACTTTCTCCATATCTT
CAAGAACAACTTTCTCAACTTACGTTTGTTAACCTTCTGTCGAAGAGCTA
TGCGATCTCTACTCTCAAACAGAAGGCAGAAATGGTTGGTATACACCCCG
GTGTTATTGCACATCCAGTTTCCGGCCGCCCATGCCTGTTTGTCAACGAG
AATACCACAGCGGGATCTCTAGAGATGGAAGATGAAAAGACTGAGAAATT
ACTGAAGCAGATCTTTTCCGAGGTGTATAGCAATGAACACGTTCTCTGTC
ATACTTGGAAAGAAAATGATGTCGTCATATGGGATAATTTTGCGACCCAG
CACTTGGCAAGAAAAGACTATGTGGATCTCAGAAGAATGTACCGTGCAAC
TGCTGAAAACCCCCTCTACCGACTTGAACGCTATGTTGATGATAGAGGAG
AGAAAGAAGCAAAACAAACATTGGGTAGTCTCTTCGGCCGAAAGGATGTC
CAACAAGCCTACTCTGAAATTGCTTACTGGTATGATCATGACATGAATAT
TTGTGGATACCGCCTGCCATCACTCGCCGTTGATGTACTTTGCCAGGAGA
TAGACCGCATGAATATGAAGGCTAACTGCAGGATTCTCGATGTAGCCGCC
GGTACGGGGCAAAATGCACTTTTGTTGATGCGTGACAAAATGACAGAGAT
CGAAGCACTCGATATTTGTGACAAGATGCTAAGTGAGGCGAGAAGGAAGG
CATTGTATAGGGCTTACTATGTCGCGGATGCAAATGAAAAACTTGATCTT
CGCCCTGGATCGTTCGATATTGCGATGTGCGTAGGAGGGGTCGAACCGAA
CCATATCAAGGCCTCCTCGGTGATTGGAGAAATGGTTAAAGTTGTAAGGG
AAGGTGGGTTGGTCTTGCTTACCGTTAGAGAGCATGACAAAGACTCAATG
AAAGAAATAGAGCGTCTGGTGTCAGCGGATAAGGCCAAAGTTGTGAGACA
AGAGACGGGAAACGGCGTTTCTGCTCTTGGCGAAATACGTCACTGCATCA
TGGTGCTTCGAGTTCTTTGA

protein sequence of Gchil10147.t1

>Gchil10147.t1 ID=Gchil10147.t1|Name=Gchil10147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=490bp
METTQQLHISTLKPFGVSIRNLDVNSDAHLLQIRKTLPQNGVIVLPAHSE
APGSPLLHHHESLTKLAMLFGKLETTHPINKNVEDSHVQILETMGQTGNI
PDSWQFHADMTWRVSPTFASVLCGKLIPPEGGDTCFVETEKMYRRLSPYL
QEQLSQLTFVNLLSKSYAISTLKQKAEMVGIHPGVIAHPVSGRPCLFVNE
NTTAGSLEMEDEKTEKLLKQIFSEVYSNEHVLCHTWKENDVVIWDNFATQ
HLARKDYVDLRRMYRATAENPLYRLERYVDDRGEKEAKQTLGSLFGRKDV
QQAYSEIAYWYDHDMNICGYRLPSLAVDVLCQEIDRMNMKANCRILDVAA
GTGQNALLLMRDKMTEIEALDICDKMLSEARRKALYRAYYVADANEKLDL
RPGSFDIAMCVGGVEPNHIKASSVIGEMVKVVREGGLVLLTVREHDKDSM
KEIERLVSADKAKVVRQETGNGVSALGEIRHCIMVLRVL*

mRNA from alignment at tig00004442_pilon:1323026..1324495+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10147.t1 ID=Gchil10147.t1|Name=Gchil10147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00004442_pilon:1323026..1324495+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACTACGCAACAACTCCATATCTCTACGCTAAAACCGTTTGGAGT
TAGCATTCGCAACCTTGATGTGAATTCTGACGCCCATCTTCTCCAGATTC
GTAAAACGCTCCCACAAAACGGCGTCATCGTTCTGCCTGCCCATTCTGAG
GCTCCCGGATCCCCGTTGCTACATCACCATGAAAGTCTAACCAAGCTTGC
CATGCTCTTTGGAAAGCTTGAGACCACGCACCCCATCAACAAAAACGTTG
AAGACTCCCATGTGCAGATTTTGGAGACCATGGGACAGACCGGAAATATT
CCTGACTCGTGGCAGTTCCATGCTGACATGACTTGGAGAGTTAGCCCTAC
CTTCGCCAGCGTCCTCTGCGGAAAGCTCATTCCCCCGGAAGGTGGTGATA
CGTGCTTCGTAGAAACAGAGAAGATGTATCGAAGACTTTCTCCATATCTT
CAAGAACAACTTTCTCAACTTACGTTTGTTAACCTTCTGTCGAAGAGCTA
TGCGATCTCTACTCTCAAACAGAAGGCAGAAATGGTTGGTATACACCCCG
GTGTTATTGCACATCCAGTTTCCGGCCGCCCATGCCTGTTTGTCAACGAG
AATACCACAGCGGGATCTCTAGAGATGGAAGATGAAAAGACTGAGAAATT
ACTGAAGCAGATCTTTTCCGAGGTGTATAGCAATGAACACGTTCTCTGTC
ATACTTGGAAAGAAAATGATGTCGTCATATGGGATAATTTTGCGACCCAG
CACTTGGCAAGAAAAGACTATGTGGATCTCAGAAGAATGTACCGTGCAAC
TGCTGAAAACCCCCTCTACCGACTTGAACGCTATGTTGATGATAGAGGAG
AGAAAGAAGCAAAACAAACATTGGGTAGTCTCTTCGGCCGAAAGGATGTC
CAACAAGCCTACTCTGAAATTGCTTACTGGTATGATCATGACATGAATAT
TTGTGGATACCGCCTGCCATCACTCGCCGTTGATGTACTTTGCCAGGAGA
TAGACCGCATGAATATGAAGGCTAACTGCAGGATTCTCGATGTAGCCGCC
GGTACGGGGCAAAATGCACTTTTGTTGATGCGTGACAAAATGACAGAGAT
CGAAGCACTCGATATTTGTGACAAGATGCTAAGTGAGGCGAGAAGGAAGG
CATTGTATAGGGCTTACTATGTCGCGGATGCAAATGAAAAACTTGATCTT
CGCCCTGGATCGTTCGATATTGCGATGTGCGTAGGAGGGGTCGAACCGAA
CCATATCAAGGCCTCCTCGGTGATTGGAGAAATGGTTAAAGTTGTAAGGG
AAGGTGGGTTGGTCTTGCTTACCGTTAGAGAGCATGACAAAGACTCAATG
AAAGAAATAGAGCGTCTGGTGTCAGCGGATAAGGCCAAAGTTGTGAGACA
AGAGACGGGAAACGGCGTTTCTGCTCTTGGCGAAATACGTCACTGCATCA
TGGTGCTTCGAGTTCTTTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:1323026..1324495+

>Gchil10147.t1 ID=Gchil10147.t1|Name=Gchil10147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00004442_pilon:1323026..1324495+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACTACGCAACAACTCCATATCTCTACGCTAAAACCGTTTGGAGT
TAGCATTCGCAACCTTGATGTGAATTCTGACGCCCATCTTCTCCAGATTC
GTAAAACGCTCCCACAAAACGGCGTCATCGTTCTGCCTGCCCATTCTGAG
GCTCCCGGATCCCCGTTGCTACATCACCATGAAAGTCTAACCAAGCTTGC
CATGCTCTTTGGAAAGCTTGAGACCACGCACCCCATCAACAAAAACGTTG
AAGACTCCCATGTGCAGATTTTGGAGACCATGGGACAGACCGGAAATATT
CCTGACTCGTGGCAGTTCCATGCTGACATGACTTGGAGAGTTAGCCCTAC
CTTCGCCAGCGTCCTCTGCGGAAAGCTCATTCCCCCGGAAGGTGGTGATA
CGTGCTTCGTAGAAACAGAGAAGATGTATCGAAGACTTTCTCCATATCTT
CAAGAACAACTTTCTCAACTTACGTTTGTTAACCTTCTGTCGAAGAGCTA
TGCGATCTCTACTCTCAAACAGAAGGCAGAAATGGTTGGTATACACCCCG
GTGTTATTGCACATCCAGTTTCCGGCCGCCCATGCCTGTTTGTCAACGAG
AATACCACAGCGGGATCTCTAGAGATGGAAGATGAAAAGACTGAGAAATT
ACTGAAGCAGATCTTTTCCGAGGTGTATAGCAATGAACACGTTCTCTGTC
ATACTTGGAAAGAAAATGATGTCGTCATATGGGATAATTTTGCGACCCAG
CACTTGGCAAGAAAAGACTATGTGGATCTCAGAAGAATGTACCGTGCAAC
TGCTGAAAACCCCCTCTACCGACTTGAACGCTATGTTGATGATAGAGGAG
AGAAAGAAGCAAAACAAACATTGGGTAGTCTCTTCGGCCGAAAGGATGTC
CAACAAGCCTACTCTGAAATTGCTTACTGGTATGATCATGACATGAATAT
TTGTGGATACCGCCTGCCATCACTCGCCGTTGATGTACTTTGCCAGGAGA
TAGACCGCATGAATATGAAGGCTAACTGCAGGATTCTCGATGTAGCCGCC
GGTACGGGGCAAAATGCACTTTTGTTGATGCGTGACAAAATGACAGAGAT
CGAAGCACTCGATATTTGTGACAAGATGCTAAGTGAGGCGAGAAGGAAGG
CATTGTATAGGGCTTACTATGTCGCGGATGCAAATGAAAAACTTGATCTT
CGCCCTGGATCGTTCGATATTGCGATGTGCGTAGGAGGGGTCGAACCGAA
CCATATCAAGGCCTCCTCGGTGATTGGAGAAATGGTTAAAGTTGTAAGGG
AAGGTGGGTTGGTCTTGCTTACCGTTAGAGAGCATGACAAAGACTCAATG
AAAGAAATAGAGCGTCTGGTGTCAGCGGATAAGGCCAAAGTTGTGAGACA
AGAGACGGGAAACGGCGTTTCTGCTCTTGGCGAAATACGTCACTGCATCA
TGGTGCTTCGAGTTCTTTGA