Gchil10121.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10121.t1
Unique NameGchil10121.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1081604..1082068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002610336.1
Preferred nameH2AFZ
PFAMsHistone,Histone_H2A_C
Max annot lvl33208|Metazoa
KEGG koko:K11251,ko:K21799
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000790,GO:0000791,GO:0000792,GO:0000976,GO:0000977,GO:0000978,GO:0000979,GO:0000980,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0005701,GO:0005719,GO:0005720,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010369,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0019827,GO:0030718,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031490,GO:0031491,GO:0031492,GO:0031974,GO:0031981,GO:0032355,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0032993,GO:0033036,GO:0033365,GO:0033993,GO:0034502,GO:0034613,GO:0035019,GO:0035326,GO:0035861,GO:0036098,GO:0040029,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043565,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071168,GO:0071310,GO:0071375,GO:0071392,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071840,GO:0080090,GO:0090734,GO:0097159,GO:0098687,GO:0098727,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Evalue7.55e-59
EggNOG OGsCOG5262@1|root,KOG1757@2759|Eukaryota,39ZW3@33154|Opisthokonta,3BPC4@33208|Metazoa,3D68R@33213|Bilateria,48E2D@7711|Chordata
Descriptionchromatin silencing
COG categoryB
BRITEko00000,ko00001,ko03019,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10121Gchil10121Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1081604..1082068 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10121.t1.stop1Gchil10121.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1081604..1081606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10121.t1.CDS1Gchil10121.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1081604..1082068 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10121.t1.exon1Gchil10121.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1081604..1082068 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10121.t1.start1Gchil10121.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1082066..1082068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10121.t1Gchil10121.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1081604..1082068 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10121.t1 ID=Gchil10121.t1|Name=Gchil10121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=155bp
MAPKKSAPADEKDKDKEKDKKSIGATNGTHTKSSTEPKKVISRSSRAGLQ
FPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDL
KVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKS
SQME*
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spliced messenger RNA

>Gchil10121.t1 ID=Gchil10121.t1|Name=Gchil10121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp|location=Sequence derived from alignment at tig00004442_pilon:1081604..1082068- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAGAAGTCCGCGCCAGCCGACGAAAAGGACAAAGACAAGGA
AAAGGACAAAAAGTCTATCGGCGCCACAAACGGAACGCATACAAAAAGCT
CCACCGAGCCGAAGAAGGTAATCTCTCGCTCTTCTCGCGCCGGTCTTCAA
TTTCCCGTCGGAAGAATCCATCGTCACCTCAAGAATCGCGTCAGTCGTCA
GGAAAGAGTGGGCGCAACCGCCGCAGTGTACTCAGCTGCTATCCTAGAAT
ACCTCACCGCAGAAGTTCTCGAACTCGCCGGAAACGCTTGCAAAGACCTT
AAGGTGAAACGAGTCACTCCCAGACATTTGCAACTTGCTATTCGTGGCGA
CGAAGAGCTTGATTGCCTTGTGCAGGCAACTATTGCTGGCGGTGGTGTTA
TTCCTTATATTCACAAGAGCCTCACCTTCAAGAAAGGTTCAAAGAAAAGC
TCTCAAATGGAATAA
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protein sequence of Gchil10121.t1

>Gchil10121.t1 ID=Gchil10121.t1|Name=Gchil10121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=155bp
MAPKKSAPADEKDKDKEKDKKSIGATNGTHTKSSTEPKKVISRSSRAGLQ
FPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDL
KVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKS
SQME*
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mRNA from alignment at tig00004442_pilon:1081604..1082068-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10121.t1 ID=Gchil10121.t1|Name=Gchil10121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp|location=Sequence derived from alignment at tig00004442_pilon:1081604..1082068- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCCAAGAAGTCCGCGCCAGCCGACGAAAAGGACAAAGACAAGGA
AAAGGACAAAAAGTCTATCGGCGCCACAAACGGAACGCATACAAAAAGCT
CCACCGAGCCGAAGAAGGTAATCTCTCGCTCTTCTCGCGCCGGTCTTCAA
TTTCCCGTCGGAAGAATCCATCGTCACCTCAAGAATCGCGTCAGTCGTCA
GGAAAGAGTGGGCGCAACCGCCGCAGTGTACTCAGCTGCTATCCTAGAAT
ACCTCACCGCAGAAGTTCTCGAACTCGCCGGAAACGCTTGCAAAGACCTT
AAGGTGAAACGAGTCACTCCCAGACATTTGCAACTTGCTATTCGTGGCGA
CGAAGAGCTTGATTGCCTTGTGCAGGCAACTATTGCTGGCGGTGGTGTTA
TTCCTTATATTCACAAGAGCCTCACCTTCAAGAAAGGTTCAAAGAAAAGC
TCTCAAATGGAATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1081604..1082068-

>Gchil10121.t1 ID=Gchil10121.t1|Name=Gchil10121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=465bp|location=Sequence derived from alignment at tig00004442_pilon:1081604..1082068- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCCAAGAAGTCCGCGCCAGCCGACGAAAAGGACAAAGACAAGGA
AAAGGACAAAAAGTCTATCGGCGCCACAAACGGAACGCATACAAAAAGCT
CCACCGAGCCGAAGAAGGTAATCTCTCGCTCTTCTCGCGCCGGTCTTCAA
TTTCCCGTCGGAAGAATCCATCGTCACCTCAAGAATCGCGTCAGTCGTCA
GGAAAGAGTGGGCGCAACCGCCGCAGTGTACTCAGCTGCTATCCTAGAAT
ACCTCACCGCAGAAGTTCTCGAACTCGCCGGAAACGCTTGCAAAGACCTT
AAGGTGAAACGAGTCACTCCCAGACATTTGCAACTTGCTATTCGTGGCGA
CGAAGAGCTTGATTGCCTTGTGCAGGCAACTATTGCTGGCGGTGGTGTTA
TTCCTTATATTCACAAGAGCCTCACCTTCAAGAAAGGTTCAAAGAAAAGC
TCTCAAATGGAATAA
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