Gchil10108.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10108.t1
Unique NameGchil10108.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:940588..941217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO97779
PFAMsATP-synt_DE_N
Max annot lvl3041|Chlorophyta
KEGG koko:K02134
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Evalue1.31e-44
EggNOG OGsCOG0355@1|root,KOG1758@2759|Eukaryota,37NU0@33090|Viridiplantae,34ICR@3041|Chlorophyta
DescriptionATP synthase, Delta/Epsilon chain, beta-sandwich domain
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10108Gchil10108Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 940588..941217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10108.t1Gchil10108.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 940588..941217 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10108.t1.start1Gchil10108.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 940588..940590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10108.t1.CDS1Gchil10108.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 940588..940680 +
Gchil10108.t1.CDS2Gchil10108.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 940781..940972 +
Gchil10108.t1.CDS3Gchil10108.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 941068..941217 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10108.t1.exon1Gchil10108.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 940588..940680 +
Gchil10108.t1.exon2Gchil10108.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 940781..940972 +
Gchil10108.t1.exon3Gchil10108.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 941068..941217 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10108.t1.intron1Gchil10108.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 940681..940780 +
Gchil10108.t1.intron2Gchil10108.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 940973..941067 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10108.t1.stop1Gchil10108.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 941215..941217 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10108.t1 ID=Gchil10108.t1|Name=Gchil10108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=145bp
MFAEEAVAIDGNKLKFNFFLPHDTIKNNAEVDMVIVPASSGLMGILPSHA
PTVAQLRSGVVEVHDGEDKESYFVSSGFAFVHKDRTDLCAVEAVKLDDID
PDAVSKGLSESEAAVASAKDDLERAEAQIGVDVYMAMQGALAMK*
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spliced messenger RNA

>Gchil10108.t1 ID=Gchil10108.t1|Name=Gchil10108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004442_pilon:940588..941217+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCGGAAGAGGCTGTCGCTATCGATGGAAACAAGTTGAAGTTCAA
TTTCTTCTTGCCCCATGATACGATCAAGAATAATGCTGAGGTGGACATGG
TAATCGTCCCAGCCTCGAGCGGTCTTATGGGTATATTACCTTCTCATGCG
CCAACTGTTGCCCAACTGCGATCTGGCGTTGTCGAAGTGCATGATGGTGA
GGACAAAGAAAGCTATTTTGTTTCTTCCGGTTTTGCTTTTGTTCATAAAG
ATCGCACAGATTTATGTGCTGTGGAAGCTGTCAAATTGGATGATATCGAT
CCGGATGCTGTTTCGAAAGGACTCTCAGAATCAGAAGCTGCCGTCGCGTC
AGCGAAGGACGACCTTGAGCGCGCTGAAGCGCAAATCGGTGTTGACGTAT
ATATGGCTATGCAAGGTGCCTTAGCGATGAAGTAA
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protein sequence of Gchil10108.t1

>Gchil10108.t1 ID=Gchil10108.t1|Name=Gchil10108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=145bp
MFAEEAVAIDGNKLKFNFFLPHDTIKNNAEVDMVIVPASSGLMGILPSHA
PTVAQLRSGVVEVHDGEDKESYFVSSGFAFVHKDRTDLCAVEAVKLDDID
PDAVSKGLSESEAAVASAKDDLERAEAQIGVDVYMAMQGALAMK*
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mRNA from alignment at tig00004442_pilon:940588..941217+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10108.t1 ID=Gchil10108.t1|Name=Gchil10108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00004442_pilon:940588..941217+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCGGAAGAGGCTGTCGCTATCGATGGAAACAAGTTGAAGTTCAA
TTTCTTCTTGCCCCATGATACGATCAAGAATAATGCTGAGGTGGTATGTT
CTTCTATGCGCCATACACACCAACGTCGTGCAGCGTTTCTTTGCGATATG
GACGCGCTAACATAATGCGCGATTATGAACATCTCCAACACAGGACATGG
TAATCGTCCCAGCCTCGAGCGGTCTTATGGGTATATTACCTTCTCATGCG
CCAACTGTTGCCCAACTGCGATCTGGCGTTGTCGAAGTGCATGATGGTGA
GGACAAAGAAAGCTATTTTGTTTCTTCCGGTTTTGCTTTTGTTCATAAAG
ATCGCACAGATTTATGTGCTGTGGAAGCTGTCAAAGTAAGTTGCTGAGCA
GTCGCTTGTGAACATTTACTGATCGACTGACTGAATCGATGGTTTGCCTT
GTATGTTTGCACAACCGATCTGCTTCATAGTTGGATGATATCGATCCGGA
TGCTGTTTCGAAAGGACTCTCAGAATCAGAAGCTGCCGTCGCGTCAGCGA
AGGACGACCTTGAGCGCGCTGAAGCGCAAATCGGTGTTGACGTATATATG
GCTATGCAAGGTGCCTTAGCGATGAAGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:940588..941217+

>Gchil10108.t1 ID=Gchil10108.t1|Name=Gchil10108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00004442_pilon:940588..941217+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCGGAAGAGGCTGTCGCTATCGATGGAAACAAGTTGAAGTTCAA
TTTCTTCTTGCCCCATGATACGATCAAGAATAATGCTGAGGTGGACATGG
TAATCGTCCCAGCCTCGAGCGGTCTTATGGGTATATTACCTTCTCATGCG
CCAACTGTTGCCCAACTGCGATCTGGCGTTGTCGAAGTGCATGATGGTGA
GGACAAAGAAAGCTATTTTGTTTCTTCCGGTTTTGCTTTTGTTCATAAAG
ATCGCACAGATTTATGTGCTGTGGAAGCTGTCAAATTGGATGATATCGAT
CCGGATGCTGTTTCGAAAGGACTCTCAGAATCAGAAGCTGCCGTCGCGTC
AGCGAAGGACGACCTTGAGCGCGCTGAAGCGCAAATCGGTGTTGACGTAT
ATATGGCTATGCAAGGTGCCTTAGCGATGAAGTAA
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