Gchil10102.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10102.t1
Unique NameGchil10102.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:893375..894223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703260.1
PFAMsCpeS
Max annot lvl2759|Eukaryota
Evalue7.19e-48
EggNOG OGs28IBS@1|root,2T1HQ@2759|Eukaryota
DescriptionCpeS-like protein
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10102Gchil10102Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 893375..894223 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10102.t1.start1Gchil10102.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 893375..893377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10102.t1.CDS1Gchil10102.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 893375..894223 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10102.t1.exon1Gchil10102.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 893375..894223 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10102.t1.stop1Gchil10102.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 894221..894223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10102.t1Gchil10102.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 893375..894223 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10102.t1 ID=Gchil10102.t1|Name=Gchil10102.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=283bp
MQCLENTDERIVSLCKDWEVDPERAQGGCYVTWTATMAWDQEGENHEGST
VFALIPDEDDNRKGRILRDRGYAEIVPITGTFFLDEHDALNLITPYEGGE
VVEKFSFDGPNVVNRMSTVRRFGGFSTATFSTETRLEDNKTEKEDEELDV
IALLNEMSFSNVGVSRDSISNESKINKSQFVGGRWGTINSSSKPSSNSAF
GSGFVSKTSSKGTEKPSVNSAFGSGFGSSSTSETEKPAVDMNGVSKKSID
AATDYGIDLSKVPPSMRQDFAESFDKDPKKST*
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spliced messenger RNA

>Gchil10102.t1 ID=Gchil10102.t1|Name=Gchil10102.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00004442_pilon:893375..894223+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATGTTTGGAAAACACCGACGAACGTATTGTTTCACTTTGCAAAGA
TTGGGAGGTCGACCCGGAAAGAGCTCAGGGAGGCTGTTATGTCACATGGA
CTGCTACAATGGCATGGGATCAAGAAGGGGAGAATCACGAAGGATCAACA
GTTTTTGCCTTGATTCCGGACGAAGACGACAATCGTAAGGGTAGAATTCT
TCGCGACAGGGGATACGCTGAAATTGTGCCCATCACGGGTACATTCTTTC
TCGATGAACACGATGCGCTTAACCTTATTACTCCATACGAAGGTGGTGAA
GTTGTCGAAAAATTCTCATTTGACGGGCCGAATGTGGTGAATCGTATGTC
AACTGTGCGTCGATTTGGTGGCTTTAGCACAGCTACATTTTCTACGGAAA
CGCGTTTGGAAGACAACAAGACAGAGAAGGAAGATGAAGAATTGGATGTA
ATTGCATTATTGAACGAAATGTCTTTCTCCAATGTAGGCGTAAGCAGAGA
TTCGATTTCTAACGAGTCAAAAATTAACAAATCACAGTTTGTTGGAGGCA
GATGGGGTACTATCAATTCATCTTCGAAGCCGTCGTCAAACAGTGCCTTT
GGTTCTGGTTTCGTTTCAAAGACTTCTTCGAAGGGTACGGAAAAGCCTTC
AGTAAACAGCGCCTTCGGCTCTGGTTTCGGCAGCTCTTCCACCTCGGAGA
CAGAGAAACCTGCTGTTGATATGAACGGCGTTTCCAAGAAGAGTATAGAT
GCTGCCACAGATTACGGCATTGATCTTTCGAAAGTTCCACCCAGTATGCG
TCAAGATTTCGCAGAAAGTTTTGACAAAGATCCCAAGAAATCCACCTAA
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protein sequence of Gchil10102.t1

>Gchil10102.t1 ID=Gchil10102.t1|Name=Gchil10102.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=283bp
MQCLENTDERIVSLCKDWEVDPERAQGGCYVTWTATMAWDQEGENHEGST
VFALIPDEDDNRKGRILRDRGYAEIVPITGTFFLDEHDALNLITPYEGGE
VVEKFSFDGPNVVNRMSTVRRFGGFSTATFSTETRLEDNKTEKEDEELDV
IALLNEMSFSNVGVSRDSISNESKINKSQFVGGRWGTINSSSKPSSNSAF
GSGFVSKTSSKGTEKPSVNSAFGSGFGSSSTSETEKPAVDMNGVSKKSID
AATDYGIDLSKVPPSMRQDFAESFDKDPKKST*
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mRNA from alignment at tig00004442_pilon:893375..894223+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10102.t1 ID=Gchil10102.t1|Name=Gchil10102.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00004442_pilon:893375..894223+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATGTTTGGAAAACACCGACGAACGTATTGTTTCACTTTGCAAAGA
TTGGGAGGTCGACCCGGAAAGAGCTCAGGGAGGCTGTTATGTCACATGGA
CTGCTACAATGGCATGGGATCAAGAAGGGGAGAATCACGAAGGATCAACA
GTTTTTGCCTTGATTCCGGACGAAGACGACAATCGTAAGGGTAGAATTCT
TCGCGACAGGGGATACGCTGAAATTGTGCCCATCACGGGTACATTCTTTC
TCGATGAACACGATGCGCTTAACCTTATTACTCCATACGAAGGTGGTGAA
GTTGTCGAAAAATTCTCATTTGACGGGCCGAATGTGGTGAATCGTATGTC
AACTGTGCGTCGATTTGGTGGCTTTAGCACAGCTACATTTTCTACGGAAA
CGCGTTTGGAAGACAACAAGACAGAGAAGGAAGATGAAGAATTGGATGTA
ATTGCATTATTGAACGAAATGTCTTTCTCCAATGTAGGCGTAAGCAGAGA
TTCGATTTCTAACGAGTCAAAAATTAACAAATCACAGTTTGTTGGAGGCA
GATGGGGTACTATCAATTCATCTTCGAAGCCGTCGTCAAACAGTGCCTTT
GGTTCTGGTTTCGTTTCAAAGACTTCTTCGAAGGGTACGGAAAAGCCTTC
AGTAAACAGCGCCTTCGGCTCTGGTTTCGGCAGCTCTTCCACCTCGGAGA
CAGAGAAACCTGCTGTTGATATGAACGGCGTTTCCAAGAAGAGTATAGAT
GCTGCCACAGATTACGGCATTGATCTTTCGAAAGTTCCACCCAGTATGCG
TCAAGATTTCGCAGAAAGTTTTGACAAAGATCCCAAGAAATCCACCTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:893375..894223+

>Gchil10102.t1 ID=Gchil10102.t1|Name=Gchil10102.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00004442_pilon:893375..894223+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATGTTTGGAAAACACCGACGAACGTATTGTTTCACTTTGCAAAGA
TTGGGAGGTCGACCCGGAAAGAGCTCAGGGAGGCTGTTATGTCACATGGA
CTGCTACAATGGCATGGGATCAAGAAGGGGAGAATCACGAAGGATCAACA
GTTTTTGCCTTGATTCCGGACGAAGACGACAATCGTAAGGGTAGAATTCT
TCGCGACAGGGGATACGCTGAAATTGTGCCCATCACGGGTACATTCTTTC
TCGATGAACACGATGCGCTTAACCTTATTACTCCATACGAAGGTGGTGAA
GTTGTCGAAAAATTCTCATTTGACGGGCCGAATGTGGTGAATCGTATGTC
AACTGTGCGTCGATTTGGTGGCTTTAGCACAGCTACATTTTCTACGGAAA
CGCGTTTGGAAGACAACAAGACAGAGAAGGAAGATGAAGAATTGGATGTA
ATTGCATTATTGAACGAAATGTCTTTCTCCAATGTAGGCGTAAGCAGAGA
TTCGATTTCTAACGAGTCAAAAATTAACAAATCACAGTTTGTTGGAGGCA
GATGGGGTACTATCAATTCATCTTCGAAGCCGTCGTCAAACAGTGCCTTT
GGTTCTGGTTTCGTTTCAAAGACTTCTTCGAAGGGTACGGAAAAGCCTTC
AGTAAACAGCGCCTTCGGCTCTGGTTTCGGCAGCTCTTCCACCTCGGAGA
CAGAGAAACCTGCTGTTGATATGAACGGCGTTTCCAAGAAGAGTATAGAT
GCTGCCACAGATTACGGCATTGATCTTTCGAAAGTTCCACCCAGTATGCG
TCAAGATTTCGCAGAAAGTTTTGACAAAGATCCCAAGAAATCCACCTAA
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