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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 31234.CRE00160 |
PFAMs | Homeobox_KN,PBC |
Max annot lvl | 33208|Metazoa |
Evalue | 2.13e-09 |
EggNOG OGs | KOG0774@1|root,KOG0774@2759|Eukaryota,39CMA@33154|Opisthokonta,3CGMP@33208|Metazoa,3DY3H@33213|Bilateria,40JCZ@6231|Nematoda,1M2Q7@119089|Chromadorea,40XUE@6236|Rhabditida |
Description | Homeobox KN domain |
COG category | K |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=643bp MSRDDRYDAPPLRAPRAPFLQYAMDAPDAYPSAPLPLPLPLPAHDMLAAP PAPTMGVPVHHHHHHHAPPPPPPPPPPPPAPPPLPAAPPPPPPPGAAAAA ASALALPFPRDRALCDFSAQPHALQSHHVHALSHHALPPPLRVAMRMGAV SDAAVGASQQHHVDLPLPRSRPVAGSLPSPPLSHSLSHSLSQQQQHQQQH QHQQQHQQQYSSMELGGGGGGGGGGGGGGGGGGSSSGGGGGGGGAALLGM DHGDSFASLVGWVTQQPSFLLLWKRVFATSGLFPLDAHAQLADALAAAER KHEAVRQCADVGGVQRAAAHFSTVEVVLSAVLAALADVRCGLTPAGGDGA ALRQALDSVSLLYSQQQMQRVGGGGAGGAAAAAAAAAAAAAAGACSLGVW RDERHIHKGFAGGGGGGGGGGGGGGGGSGLASSGRTPLSEKAKAALERWF HDNVENPYPTIEQKLQLATMCSMSLNSVNNWFGNKRMRIKRKMLNVAGGG AFGGDGGDGGGGGGGGISDKVLAPRSKWKAVVVSKMNGRAGREVVASATG RAGARGAAATAAAAAAAAAAAAAGGGGGGGGGSVGSSALGVALDALGDNG EGEGDGGGGDARHARARLQRLQRLQQQQHPLERLERLERLEE* back to topspliced messenger RNA >Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00004442_pilon:683708..685636+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGCGCGACGACCGCTACGACGCCCCGCCGCTGCGCGCCCCGCGCGC GCCCTTCTTGCAGTACGCCATGGACGCCCCCGACGCTTACCCTAGCGCGC CGCTGCCGTTGCCGTTGCCGTTGCCCGCGCACGACATGCTCGCCGCGCCG CCCGCGCCCACCATGGGTgtccccgttcaccaccaccaccatcaccacgc accaccaccaccaccgccgccgccgccgccgccgccggcaccgccgccgc tgccggccgcgcccccccctccgccgcctccTGGCGCTGCGGCCGCGGCC GCGTCGGCGCTGGCGCTGCCGTTTCCACGCGACCGCGCGCTGTGTGACTT TTCGGCGCAGCCGCACGCGCTGCAGTCGCATCATGTGCACGCGTTGTCGC ACCACGCGCTGCCGCCACCGCTGCGCGTGGCTATGCGCATGGGCGCCGTG TCGGACGCTGCCGTCGGTGCGTCGCAACAACACCATGTAGATTTGCCGCT GCCGAGGTCGCGCCCGGTGGCGGGGTCGCTGCCGTCCCcaccgctgtcac actcgctgtcgcactcgctgtcgcaGCAGCAACAGcaccaacaacaacac caacaccaacaacaacaccaacaAcagtactcgagcatggagctcggcgg aggtggtggtggtggcggcggcggcggcggcggcggcggtggcggcggca gtagcagtggcggtggcggcggcggcggcggcgcagcgctgctgGGTATG GATCACGGCGATAGCTTCGCGTCGCTGGTGGGGTGGGTGACGCAACAGCC GTCGTTTCTACTGCTGTGGAAGCGCGTGTTTGCGACGAGCGGACTGTTTC CGCTCGACGCGCACGCGCAGCTTGCCGACGCGCTGGCCGCCGCCGAGCGC AAGCACGAGGCGGTGCGACAGTGCGCCGATGTGGGTGGCGTGCAGCGTGC GGCTGCGCACTTTTCCACCGTGGAGGTGGTGCTGTCGGCTGTGCTTGCCG CGCTGGCCGACGTGAGATGCGGGCTGACGCCCGCAGGCGGCGACGGCGCC GCGCTGAGACAGGCGCTCGACTCGGTGTCGCTGCTCTACTCgcagcagca gatgcagcgcgttggtggtggtggcgctggtggcgcggcggctgcggcgg ctgcagcggcggctgcggcggcggccggCGCATGCTCGCTGGGCGTGTGG CGCGACGAGCGGCACATCCACAAGGGCTTTGCGggcggtggcggtggtgg cggcggcggcggtggtggtggcggcggcggcagcgggttggcgtcgtccg ggcgCACGCCGCTGTCGGAGAAGGCCAAGGCGGCGCTGGAGCGATGGTTC CACGACAACGTGGAGAACCCGTACCCGACGATCGAGCAGAAACTGCAGTT GGCCACCATGTGCTCCATGAGCCTCAACTCGGTGAACAACTGGTTTGGCA ACAAGCGCATGCGCATCAAGCGAAAGATGCTCAACGTGGCGGGCGGCGGC GCGTTTggcggcgacggcggcgacggcggcggcggcggtggcggcggcAT CTCGGATAAGGTGCTGGCGCCGCGCTCCAAGTGGAAGGCCGTGGTGGTGT CCAAGATGAACGGGCGCGCGGGACGCGAGGTGGTGGCGTCGGCCACGGGG CGCGCCGGCGCTCGCGGAgctgctgctactgctgctgctgctgctgctgc tgctgctgctgctgctgctgGAGGAGGAGGTGGAGGTGGAGGTGGGAGCG TAGGAAGCAGCGCGCTGGGCGTTGCGCTGGACGCGCTTGGCGACAATGGC GAGGGCGAGGGCGATGGTGGTGGCGGTGACGCGCGTCACGCGCGCGCgcg gctgcagcggctgcagcggctgcagcagcagcagcacccgctggagcGAC TGGAGCGACTGGAGCGTCTGGAggagtga back to topprotein sequence of Gchil10075.t1 >Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=643bp
MSRDDRYDAPPLRAPRAPFLQYAMDAPDAYPSAPLPLPLPLPAHDMLAAP PAPTMGVPVHHHHHHHAPPPPPPPPPPPPAPPPLPAAPPPPPPPGAAAAA ASALALPFPRDRALCDFSAQPHALQSHHVHALSHHALPPPLRVAMRMGAV SDAAVGASQQHHVDLPLPRSRPVAGSLPSPPLSHSLSHSLSQQQQHQQQH QHQQQHQQQYSSMELGGGGGGGGGGGGGGGGGGSSSGGGGGGGGAALLGM DHGDSFASLVGWVTQQPSFLLLWKRVFATSGLFPLDAHAQLADALAAAER KHEAVRQCADVGGVQRAAAHFSTVEVVLSAVLAALADVRCGLTPAGGDGA ALRQALDSVSLLYSQQQMQRVGGGGAGGAAAAAAAAAAAAAAGACSLGVW RDERHIHKGFAGGGGGGGGGGGGGGGGSGLASSGRTPLSEKAKAALERWF HDNVENPYPTIEQKLQLATMCSMSLNSVNNWFGNKRMRIKRKMLNVAGGG AFGGDGGDGGGGGGGGISDKVLAPRSKWKAVVVSKMNGRAGREVVASATG RAGARGAAATAAAAAAAAAAAAAGGGGGGGGGSVGSSALGVALDALGDNG EGEGDGGGGDARHARARLQRLQRLQQQQHPLERLERLERLEE* back to topmRNA from alignment at tig00004442_pilon:683708..685636+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00004442_pilon:683708..685636+ (Gracilaria chilensis NLEC103_M9 male) ATGTCGCGCGACGACCGCTACGACGCCCCGCCGCTGCGCGCCCCGCGCGC
GCCCTTCTTGCAGTACGCCATGGACGCCCCCGACGCTTACCCTAGCGCGC
CGCTGCCGTTGCCGTTGCCGTTGCCCGCGCACGACATGCTCGCCGCGCCG
CCCGCGCCCACCATGGGTgtccccgttcaccaccaccaccatcaccacgc
accaccaccaccaccgccgccgccgccgccgccgccggcaccgccgccgc
tgccggccgcgcccccccctccgccgcctccTGGCGCTGCGGCCGCGGCC
GCGTCGGCGCTGGCGCTGCCGTTTCCACGCGACCGCGCGCTGTGTGACTT
TTCGGCGCAGCCGCACGCGCTGCAGTCGCATCATGTGCACGCGTTGTCGC
ACCACGCGCTGCCGCCACCGCTGCGCGTGGCTATGCGCATGGGCGCCGTG
TCGGACGCTGCCGTCGGTGCGTCGCAACAACACCATGTAGATTTGCCGCT
GCCGAGGTCGCGCCCGGTGGCGGGGTCGCTGCCGTCCCcaccgctgtcac
actcgctgtcgcactcgctgtcgcaGCAGCAACAGcaccaacaacaacac
caacaccaacaacaacaccaacaAcagtactcgagcatggagctcggcgg
aggtggtggtggtggcggcggcggcggcggcggcggcggtggcggcggca
gtagcagtggcggtggcggcggcggcggcggcgcagcgctgctgGGTATG
GATCACGGCGATAGCTTCGCGTCGCTGGTGGGGTGGGTGACGCAACAGCC
GTCGTTTCTACTGCTGTGGAAGCGCGTGTTTGCGACGAGCGGACTGTTTC
CGCTCGACGCGCACGCGCAGCTTGCCGACGCGCTGGCCGCCGCCGAGCGC
AAGCACGAGGCGGTGCGACAGTGCGCCGATGTGGGTGGCGTGCAGCGTGC
GGCTGCGCACTTTTCCACCGTGGAGGTGGTGCTGTCGGCTGTGCTTGCCG
CGCTGGCCGACGTGAGATGCGGGCTGACGCCCGCAGGCGGCGACGGCGCC
GCGCTGAGACAGGCGCTCGACTCGGTGTCGCTGCTCTACTCgcagcagca
gatgcagcgcgttggtggtggtggcgctggtggcgcggcggctgcggcgg
ctgcagcggcggctgcggcggcggccggCGCATGCTCGCTGGGCGTGTGG
CGCGACGAGCGGCACATCCACAAGGGCTTTGCGggcggtggcggtggtgg
cggcggcggcggtggtggtggcggcggcggcagcgggttggcgtcgtccg
ggcgCACGCCGCTGTCGGAGAAGGCCAAGGCGGCGCTGGAGCGATGGTTC
CACGACAACGTGGAGAACCCGTACCCGACGATCGAGCAGAAACTGCAGTT
GGCCACCATGTGCTCCATGAGCCTCAACTCGGTGAACAACTGGTTTGGCA
ACAAGCGCATGCGCATCAAGCGAAAGATGCTCAACGTGGCGGGCGGCGGC
GCGTTTggcggcgacggcggcgacggcggcggcggcggtggcggcggcAT
CTCGGATAAGGTGCTGGCGCCGCGCTCCAAGTGGAAGGCCGTGGTGGTGT
CCAAGATGAACGGGCGCGCGGGACGCGAGGTGGTGGCGTCGGCCACGGGG
CGCGCCGGCGCTCGCGGAgctgctgctactgctgctgctgctgctgctgc
tgctgctgctgctgctgctgGAGGAGGAGGTGGAGGTGGAGGTGGGAGCG
TAGGAAGCAGCGCGCTGGGCGTTGCGCTGGACGCGCTTGGCGACAATGGC
GAGGGCGAGGGCGATGGTGGTGGCGGTGACGCGCGTCACGCGCGCGCgcg
gctgcagcggctgcagcggctgcagcagcagcagcacccgctggagcGAC
TGGAGCGACTGGAGCGTCTGGAggagtga back to topCoding sequence (CDS) from alignment at tig00004442_pilon:683708..685636+ >Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1929bp|location=Sequence derived from alignment at tig00004442_pilon:683708..685636+ (Gracilaria chilensis NLEC103_M9 male) ATGTCGCGCGACGACCGCTACGACGCCCCGCCGCTGCGCGCCCCGCGCGC GCCCTTCTTGCAGTACGCCATGGACGCCCCCGACGCTTACCCTAGCGCGC CGCTGCCGTTGCCGTTGCCGTTGCCCGCGCACGACATGCTCGCCGCGCCG CCCGCGCCCACCATGGGTgtccccgttcaccaccaccaccatcaccacgc accaccaccaccaccgccgccgccgccgccgccgccggcaccgccgccgc tgccggccgcgcccccccctccgccgcctccTGGCGCTGCGGCCGCGGCC GCGTCGGCGCTGGCGCTGCCGTTTCCACGCGACCGCGCGCTGTGTGACTT TTCGGCGCAGCCGCACGCGCTGCAGTCGCATCATGTGCACGCGTTGTCGC ACCACGCGCTGCCGCCACCGCTGCGCGTGGCTATGCGCATGGGCGCCGTG TCGGACGCTGCCGTCGGTGCGTCGCAACAACACCATGTAGATTTGCCGCT GCCGAGGTCGCGCCCGGTGGCGGGGTCGCTGCCGTCCCcaccgctgtcac actcgctgtcgcactcgctgtcgcaGCAGCAACAGcaccaacaacaacac caacaccaacaacaacaccaacaAcagtactcgagcatggagctcggcgg aggtggtggtggtggcggcggcggcggcggcggcggcggtggcggcggca gtagcagtggcggtggcggcggcggcggcggcgcagcgctgctgGGTATG GATCACGGCGATAGCTTCGCGTCGCTGGTGGGGTGGGTGACGCAACAGCC GTCGTTTCTACTGCTGTGGAAGCGCGTGTTTGCGACGAGCGGACTGTTTC CGCTCGACGCGCACGCGCAGCTTGCCGACGCGCTGGCCGCCGCCGAGCGC AAGCACGAGGCGGTGCGACAGTGCGCCGATGTGGGTGGCGTGCAGCGTGC GGCTGCGCACTTTTCCACCGTGGAGGTGGTGCTGTCGGCTGTGCTTGCCG CGCTGGCCGACGTGAGATGCGGGCTGACGCCCGCAGGCGGCGACGGCGCC GCGCTGAGACAGGCGCTCGACTCGGTGTCGCTGCTCTACTCgcagcagca gatgcagcgcgttggtggtggtggcgctggtggcgcggcggctgcggcgg ctgcagcggcggctgcggcggcggccggCGCATGCTCGCTGGGCGTGTGG CGCGACGAGCGGCACATCCACAAGGGCTTTGCGggcggtggcggtggtgg cggcggcggcggtggtggtggcggcggcggcagcgggttggcgtcgtccg ggcgCACGCCGCTGTCGGAGAAGGCCAAGGCGGCGCTGGAGCGATGGTTC CACGACAACGTGGAGAACCCGTACCCGACGATCGAGCAGAAACTGCAGTT GGCCACCATGTGCTCCATGAGCCTCAACTCGGTGAACAACTGGTTTGGCA ACAAGCGCATGCGCATCAAGCGAAAGATGCTCAACGTGGCGGGCGGCGGC GCGTTTggcggcgacggcggcgacggcggcggcggcggtggcggcggcAT CTCGGATAAGGTGCTGGCGCCGCGCTCCAAGTGGAAGGCCGTGGTGGTGT CCAAGATGAACGGGCGCGCGGGACGCGAGGTGGTGGCGTCGGCCACGGGG CGCGCCGGCGCTCGCGGAgctgctgctactgctgctgctgctgctgctgc tgctgctgctgctgctgctgGAGGAGGAGGTGGAGGTGGAGGTGGGAGCG TAGGAAGCAGCGCGCTGGGCGTTGCGCTGGACGCGCTTGGCGACAATGGC GAGGGCGAGGGCGATGGTGGTGGCGGTGACGCGCGTCACGCGCGCGCgcg gctgcagcggctgcagcggctgcagcagcagcagcacccgctggagcGAC TGGAGCGACTGGAGCGTCTGGAggagtga back to top
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