Gchil10075.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10075.t1
Unique NameGchil10075.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length643
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:683708..685636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31234.CRE00160
PFAMsHomeobox_KN,PBC
Max annot lvl33208|Metazoa
Evalue2.13e-09
EggNOG OGsKOG0774@1|root,KOG0774@2759|Eukaryota,39CMA@33154|Opisthokonta,3CGMP@33208|Metazoa,3DY3H@33213|Bilateria,40JCZ@6231|Nematoda,1M2Q7@119089|Chromadorea,40XUE@6236|Rhabditida
DescriptionHomeobox KN domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10075Gchil10075Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 683708..685636 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10075.t1.start1Gchil10075.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 683708..683710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10075.t1.CDS1Gchil10075.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 683708..685636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10075.t1.exon1Gchil10075.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 683708..685636 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10075.t1.stop1Gchil10075.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 685634..685636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10075.t1Gchil10075.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 683708..685636 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=643bp
MSRDDRYDAPPLRAPRAPFLQYAMDAPDAYPSAPLPLPLPLPAHDMLAAP
PAPTMGVPVHHHHHHHAPPPPPPPPPPPPAPPPLPAAPPPPPPPGAAAAA
ASALALPFPRDRALCDFSAQPHALQSHHVHALSHHALPPPLRVAMRMGAV
SDAAVGASQQHHVDLPLPRSRPVAGSLPSPPLSHSLSHSLSQQQQHQQQH
QHQQQHQQQYSSMELGGGGGGGGGGGGGGGGGGSSSGGGGGGGGAALLGM
DHGDSFASLVGWVTQQPSFLLLWKRVFATSGLFPLDAHAQLADALAAAER
KHEAVRQCADVGGVQRAAAHFSTVEVVLSAVLAALADVRCGLTPAGGDGA
ALRQALDSVSLLYSQQQMQRVGGGGAGGAAAAAAAAAAAAAAGACSLGVW
RDERHIHKGFAGGGGGGGGGGGGGGGGSGLASSGRTPLSEKAKAALERWF
HDNVENPYPTIEQKLQLATMCSMSLNSVNNWFGNKRMRIKRKMLNVAGGG
AFGGDGGDGGGGGGGGISDKVLAPRSKWKAVVVSKMNGRAGREVVASATG
RAGARGAAATAAAAAAAAAAAAAGGGGGGGGGSVGSSALGVALDALGDNG
EGEGDGGGGDARHARARLQRLQRLQQQQHPLERLERLERLEE*
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spliced messenger RNA

>Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00004442_pilon:683708..685636+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCGACGACCGCTACGACGCCCCGCCGCTGCGCGCCCCGCGCGC
GCCCTTCTTGCAGTACGCCATGGACGCCCCCGACGCTTACCCTAGCGCGC
CGCTGCCGTTGCCGTTGCCGTTGCCCGCGCACGACATGCTCGCCGCGCCG
CCCGCGCCCACCATGGGTgtccccgttcaccaccaccaccatcaccacgc
accaccaccaccaccgccgccgccgccgccgccgccggcaccgccgccgc
tgccggccgcgcccccccctccgccgcctccTGGCGCTGCGGCCGCGGCC
GCGTCGGCGCTGGCGCTGCCGTTTCCACGCGACCGCGCGCTGTGTGACTT
TTCGGCGCAGCCGCACGCGCTGCAGTCGCATCATGTGCACGCGTTGTCGC
ACCACGCGCTGCCGCCACCGCTGCGCGTGGCTATGCGCATGGGCGCCGTG
TCGGACGCTGCCGTCGGTGCGTCGCAACAACACCATGTAGATTTGCCGCT
GCCGAGGTCGCGCCCGGTGGCGGGGTCGCTGCCGTCCCcaccgctgtcac
actcgctgtcgcactcgctgtcgcaGCAGCAACAGcaccaacaacaacac
caacaccaacaacaacaccaacaAcagtactcgagcatggagctcggcgg
aggtggtggtggtggcggcggcggcggcggcggcggcggtggcggcggca
gtagcagtggcggtggcggcggcggcggcggcgcagcgctgctgGGTATG
GATCACGGCGATAGCTTCGCGTCGCTGGTGGGGTGGGTGACGCAACAGCC
GTCGTTTCTACTGCTGTGGAAGCGCGTGTTTGCGACGAGCGGACTGTTTC
CGCTCGACGCGCACGCGCAGCTTGCCGACGCGCTGGCCGCCGCCGAGCGC
AAGCACGAGGCGGTGCGACAGTGCGCCGATGTGGGTGGCGTGCAGCGTGC
GGCTGCGCACTTTTCCACCGTGGAGGTGGTGCTGTCGGCTGTGCTTGCCG
CGCTGGCCGACGTGAGATGCGGGCTGACGCCCGCAGGCGGCGACGGCGCC
GCGCTGAGACAGGCGCTCGACTCGGTGTCGCTGCTCTACTCgcagcagca
gatgcagcgcgttggtggtggtggcgctggtggcgcggcggctgcggcgg
ctgcagcggcggctgcggcggcggccggCGCATGCTCGCTGGGCGTGTGG
CGCGACGAGCGGCACATCCACAAGGGCTTTGCGggcggtggcggtggtgg
cggcggcggcggtggtggtggcggcggcggcagcgggttggcgtcgtccg
ggcgCACGCCGCTGTCGGAGAAGGCCAAGGCGGCGCTGGAGCGATGGTTC
CACGACAACGTGGAGAACCCGTACCCGACGATCGAGCAGAAACTGCAGTT
GGCCACCATGTGCTCCATGAGCCTCAACTCGGTGAACAACTGGTTTGGCA
ACAAGCGCATGCGCATCAAGCGAAAGATGCTCAACGTGGCGGGCGGCGGC
GCGTTTggcggcgacggcggcgacggcggcggcggcggtggcggcggcAT
CTCGGATAAGGTGCTGGCGCCGCGCTCCAAGTGGAAGGCCGTGGTGGTGT
CCAAGATGAACGGGCGCGCGGGACGCGAGGTGGTGGCGTCGGCCACGGGG
CGCGCCGGCGCTCGCGGAgctgctgctactgctgctgctgctgctgctgc
tgctgctgctgctgctgctgGAGGAGGAGGTGGAGGTGGAGGTGGGAGCG
TAGGAAGCAGCGCGCTGGGCGTTGCGCTGGACGCGCTTGGCGACAATGGC
GAGGGCGAGGGCGATGGTGGTGGCGGTGACGCGCGTCACGCGCGCGCgcg
gctgcagcggctgcagcggctgcagcagcagcagcacccgctggagcGAC
TGGAGCGACTGGAGCGTCTGGAggagtga
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protein sequence of Gchil10075.t1

>Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=643bp
MSRDDRYDAPPLRAPRAPFLQYAMDAPDAYPSAPLPLPLPLPAHDMLAAP
PAPTMGVPVHHHHHHHAPPPPPPPPPPPPAPPPLPAAPPPPPPPGAAAAA
ASALALPFPRDRALCDFSAQPHALQSHHVHALSHHALPPPLRVAMRMGAV
SDAAVGASQQHHVDLPLPRSRPVAGSLPSPPLSHSLSHSLSQQQQHQQQH
QHQQQHQQQYSSMELGGGGGGGGGGGGGGGGGGSSSGGGGGGGGAALLGM
DHGDSFASLVGWVTQQPSFLLLWKRVFATSGLFPLDAHAQLADALAAAER
KHEAVRQCADVGGVQRAAAHFSTVEVVLSAVLAALADVRCGLTPAGGDGA
ALRQALDSVSLLYSQQQMQRVGGGGAGGAAAAAAAAAAAAAAGACSLGVW
RDERHIHKGFAGGGGGGGGGGGGGGGGSGLASSGRTPLSEKAKAALERWF
HDNVENPYPTIEQKLQLATMCSMSLNSVNNWFGNKRMRIKRKMLNVAGGG
AFGGDGGDGGGGGGGGISDKVLAPRSKWKAVVVSKMNGRAGREVVASATG
RAGARGAAATAAAAAAAAAAAAAGGGGGGGGGSVGSSALGVALDALGDNG
EGEGDGGGGDARHARARLQRLQRLQQQQHPLERLERLERLEE*
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mRNA from alignment at tig00004442_pilon:683708..685636+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00004442_pilon:683708..685636+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCGACGACCGCTACGACGCCCCGCCGCTGCGCGCCCCGCGCGC
GCCCTTCTTGCAGTACGCCATGGACGCCCCCGACGCTTACCCTAGCGCGC
CGCTGCCGTTGCCGTTGCCGTTGCCCGCGCACGACATGCTCGCCGCGCCG
CCCGCGCCCACCATGGGTgtccccgttcaccaccaccaccatcaccacgc
accaccaccaccaccgccgccgccgccgccgccgccggcaccgccgccgc
tgccggccgcgcccccccctccgccgcctccTGGCGCTGCGGCCGCGGCC
GCGTCGGCGCTGGCGCTGCCGTTTCCACGCGACCGCGCGCTGTGTGACTT
TTCGGCGCAGCCGCACGCGCTGCAGTCGCATCATGTGCACGCGTTGTCGC
ACCACGCGCTGCCGCCACCGCTGCGCGTGGCTATGCGCATGGGCGCCGTG
TCGGACGCTGCCGTCGGTGCGTCGCAACAACACCATGTAGATTTGCCGCT
GCCGAGGTCGCGCCCGGTGGCGGGGTCGCTGCCGTCCCcaccgctgtcac
actcgctgtcgcactcgctgtcgcaGCAGCAACAGcaccaacaacaacac
caacaccaacaacaacaccaacaAcagtactcgagcatggagctcggcgg
aggtggtggtggtggcggcggcggcggcggcggcggcggtggcggcggca
gtagcagtggcggtggcggcggcggcggcggcgcagcgctgctgGGTATG
GATCACGGCGATAGCTTCGCGTCGCTGGTGGGGTGGGTGACGCAACAGCC
GTCGTTTCTACTGCTGTGGAAGCGCGTGTTTGCGACGAGCGGACTGTTTC
CGCTCGACGCGCACGCGCAGCTTGCCGACGCGCTGGCCGCCGCCGAGCGC
AAGCACGAGGCGGTGCGACAGTGCGCCGATGTGGGTGGCGTGCAGCGTGC
GGCTGCGCACTTTTCCACCGTGGAGGTGGTGCTGTCGGCTGTGCTTGCCG
CGCTGGCCGACGTGAGATGCGGGCTGACGCCCGCAGGCGGCGACGGCGCC
GCGCTGAGACAGGCGCTCGACTCGGTGTCGCTGCTCTACTCgcagcagca
gatgcagcgcgttggtggtggtggcgctggtggcgcggcggctgcggcgg
ctgcagcggcggctgcggcggcggccggCGCATGCTCGCTGGGCGTGTGG
CGCGACGAGCGGCACATCCACAAGGGCTTTGCGggcggtggcggtggtgg
cggcggcggcggtggtggtggcggcggcggcagcgggttggcgtcgtccg
ggcgCACGCCGCTGTCGGAGAAGGCCAAGGCGGCGCTGGAGCGATGGTTC
CACGACAACGTGGAGAACCCGTACCCGACGATCGAGCAGAAACTGCAGTT
GGCCACCATGTGCTCCATGAGCCTCAACTCGGTGAACAACTGGTTTGGCA
ACAAGCGCATGCGCATCAAGCGAAAGATGCTCAACGTGGCGGGCGGCGGC
GCGTTTggcggcgacggcggcgacggcggcggcggcggtggcggcggcAT
CTCGGATAAGGTGCTGGCGCCGCGCTCCAAGTGGAAGGCCGTGGTGGTGT
CCAAGATGAACGGGCGCGCGGGACGCGAGGTGGTGGCGTCGGCCACGGGG
CGCGCCGGCGCTCGCGGAgctgctgctactgctgctgctgctgctgctgc
tgctgctgctgctgctgctgGAGGAGGAGGTGGAGGTGGAGGTGGGAGCG
TAGGAAGCAGCGCGCTGGGCGTTGCGCTGGACGCGCTTGGCGACAATGGC
GAGGGCGAGGGCGATGGTGGTGGCGGTGACGCGCGTCACGCGCGCGCgcg
gctgcagcggctgcagcggctgcagcagcagcagcacccgctggagcGAC
TGGAGCGACTGGAGCGTCTGGAggagtga
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Coding sequence (CDS) from alignment at tig00004442_pilon:683708..685636+

>Gchil10075.t1 ID=Gchil10075.t1|Name=Gchil10075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1929bp|location=Sequence derived from alignment at tig00004442_pilon:683708..685636+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCGACGACCGCTACGACGCCCCGCCGCTGCGCGCCCCGCGCGC
GCCCTTCTTGCAGTACGCCATGGACGCCCCCGACGCTTACCCTAGCGCGC
CGCTGCCGTTGCCGTTGCCGTTGCCCGCGCACGACATGCTCGCCGCGCCG
CCCGCGCCCACCATGGGTgtccccgttcaccaccaccaccatcaccacgc
accaccaccaccaccgccgccgccgccgccgccgccggcaccgccgccgc
tgccggccgcgcccccccctccgccgcctccTGGCGCTGCGGCCGCGGCC
GCGTCGGCGCTGGCGCTGCCGTTTCCACGCGACCGCGCGCTGTGTGACTT
TTCGGCGCAGCCGCACGCGCTGCAGTCGCATCATGTGCACGCGTTGTCGC
ACCACGCGCTGCCGCCACCGCTGCGCGTGGCTATGCGCATGGGCGCCGTG
TCGGACGCTGCCGTCGGTGCGTCGCAACAACACCATGTAGATTTGCCGCT
GCCGAGGTCGCGCCCGGTGGCGGGGTCGCTGCCGTCCCcaccgctgtcac
actcgctgtcgcactcgctgtcgcaGCAGCAACAGcaccaacaacaacac
caacaccaacaacaacaccaacaAcagtactcgagcatggagctcggcgg
aggtggtggtggtggcggcggcggcggcggcggcggcggtggcggcggca
gtagcagtggcggtggcggcggcggcggcggcgcagcgctgctgGGTATG
GATCACGGCGATAGCTTCGCGTCGCTGGTGGGGTGGGTGACGCAACAGCC
GTCGTTTCTACTGCTGTGGAAGCGCGTGTTTGCGACGAGCGGACTGTTTC
CGCTCGACGCGCACGCGCAGCTTGCCGACGCGCTGGCCGCCGCCGAGCGC
AAGCACGAGGCGGTGCGACAGTGCGCCGATGTGGGTGGCGTGCAGCGTGC
GGCTGCGCACTTTTCCACCGTGGAGGTGGTGCTGTCGGCTGTGCTTGCCG
CGCTGGCCGACGTGAGATGCGGGCTGACGCCCGCAGGCGGCGACGGCGCC
GCGCTGAGACAGGCGCTCGACTCGGTGTCGCTGCTCTACTCgcagcagca
gatgcagcgcgttggtggtggtggcgctggtggcgcggcggctgcggcgg
ctgcagcggcggctgcggcggcggccggCGCATGCTCGCTGGGCGTGTGG
CGCGACGAGCGGCACATCCACAAGGGCTTTGCGggcggtggcggtggtgg
cggcggcggcggtggtggtggcggcggcggcagcgggttggcgtcgtccg
ggcgCACGCCGCTGTCGGAGAAGGCCAAGGCGGCGCTGGAGCGATGGTTC
CACGACAACGTGGAGAACCCGTACCCGACGATCGAGCAGAAACTGCAGTT
GGCCACCATGTGCTCCATGAGCCTCAACTCGGTGAACAACTGGTTTGGCA
ACAAGCGCATGCGCATCAAGCGAAAGATGCTCAACGTGGCGGGCGGCGGC
GCGTTTggcggcgacggcggcgacggcggcggcggcggtggcggcggcAT
CTCGGATAAGGTGCTGGCGCCGCGCTCCAAGTGGAAGGCCGTGGTGGTGT
CCAAGATGAACGGGCGCGCGGGACGCGAGGTGGTGGCGTCGGCCACGGGG
CGCGCCGGCGCTCGCGGAgctgctgctactgctgctgctgctgctgctgc
tgctgctgctgctgctgctgGAGGAGGAGGTGGAGGTGGAGGTGGGAGCG
TAGGAAGCAGCGCGCTGGGCGTTGCGCTGGACGCGCTTGGCGACAATGGC
GAGGGCGAGGGCGATGGTGGTGGCGGTGACGCGCGTCACGCGCGCGCgcg
gctgcagcggctgcagcggctgcagcagcagcagcacccgctggagcGAC
TGGAGCGACTGGAGCGTCTGGAggagtga
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