Gchil10061.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10061.t1
Unique NameGchil10061.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:647274..647825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD31090
PFAMsHelicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K10896
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
Evalue3.4e-06
EggNOG OGsCOG0553@1|root,KOG0383@2759|Eukaryota
Descriptionperipheral T cell tolerance induction
COG categoryKL
BRITEko00000,ko00001,ko00002,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10061Gchil10061Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 647274..647825 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10061.t1.stop1Gchil10061.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 647274..647276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10061.t1.CDS1Gchil10061.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 647274..647825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10061.t1.exon1Gchil10061.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 647274..647825 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10061.t1.start1Gchil10061.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 647823..647825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10061.t1Gchil10061.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 647274..647825 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10061.t1 ID=Gchil10061.t1|Name=Gchil10061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=184bp
METTGVVLQSEHIKIQQWPHSRPDCPSLWNGSSNPCDQCYCYVCDVPVGR
CDDISLHAAADGRTPDWAQTKRRRRALAQTWLDIPDLVDLLVSFSVDESQ
LCIKQNTRASFEVRSPTSISPEDKDFVTEKVAKKLDFEGENSGGDLYAGT
EIDDAAAGVDDLLLHSLSKVKIELESDKTGNFE*
back to top

spliced messenger RNA

>Gchil10061.t1 ID=Gchil10061.t1|Name=Gchil10061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00004442_pilon:647274..647825- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACAACGGGCGTCGTCCTTCAGTCGGAACACATTAAGATCCAACA
ATGGCCACATTCTCGACCCGATTGCCCGTCCCTTTGGAATGGTTCTTCGA
ATCCCTGTGATCAGTGTTACTGCTACGTGTGTGATGTGCCCGTAGGAAGA
TGTGATGATATCTCATTGCACGCTGCAGCGGACGGGAGGACCCCGGATTG
GGCACAGACAAAACGCCGTCGCCGCGCACTGGCGCAGACTTGGTTGGATA
TTCCAGATCTCGTGGATTTACTAGTTTCGTTCTCCGTCGACGAAAGCCAG
TTATGCATAAAGCAAAACACTCGTGCCTCTTTTGAAGTTCGATCGCCCAC
ATCGATTAGTCCTGAAGACAAAGATTTTGTGACTGAAAAGGTCGCGAAAA
AGCTAGACTTCGAAGGCGAAAACAGCGGTGGAGACTTGTACGCCGGCACA
GAAATTGACGATGCAGCAGCAGGTGTCGACGACTTGTTGCTTCATAGCCT
CAGCAAGGTGAAGATAGAGCTGGAAAGTGACAAGACGGGAAATTTTGAAT
GA
back to top

protein sequence of Gchil10061.t1

>Gchil10061.t1 ID=Gchil10061.t1|Name=Gchil10061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=184bp
METTGVVLQSEHIKIQQWPHSRPDCPSLWNGSSNPCDQCYCYVCDVPVGR
CDDISLHAAADGRTPDWAQTKRRRRALAQTWLDIPDLVDLLVSFSVDESQ
LCIKQNTRASFEVRSPTSISPEDKDFVTEKVAKKLDFEGENSGGDLYAGT
EIDDAAAGVDDLLLHSLSKVKIELESDKTGNFE*
back to top

mRNA from alignment at tig00004442_pilon:647274..647825-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10061.t1 ID=Gchil10061.t1|Name=Gchil10061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00004442_pilon:647274..647825- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACAACGGGCGTCGTCCTTCAGTCGGAACACATTAAGATCCAACA
ATGGCCACATTCTCGACCCGATTGCCCGTCCCTTTGGAATGGTTCTTCGA
ATCCCTGTGATCAGTGTTACTGCTACGTGTGTGATGTGCCCGTAGGAAGA
TGTGATGATATCTCATTGCACGCTGCAGCGGACGGGAGGACCCCGGATTG
GGCACAGACAAAACGCCGTCGCCGCGCACTGGCGCAGACTTGGTTGGATA
TTCCAGATCTCGTGGATTTACTAGTTTCGTTCTCCGTCGACGAAAGCCAG
TTATGCATAAAGCAAAACACTCGTGCCTCTTTTGAAGTTCGATCGCCCAC
ATCGATTAGTCCTGAAGACAAAGATTTTGTGACTGAAAAGGTCGCGAAAA
AGCTAGACTTCGAAGGCGAAAACAGCGGTGGAGACTTGTACGCCGGCACA
GAAATTGACGATGCAGCAGCAGGTGTCGACGACTTGTTGCTTCATAGCCT
CAGCAAGGTGAAGATAGAGCTGGAAAGTGACAAGACGGGAAATTTTGAAT
GA
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:647274..647825-

>Gchil10061.t1 ID=Gchil10061.t1|Name=Gchil10061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00004442_pilon:647274..647825- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACAACGGGCGTCGTCCTTCAGTCGGAACACATTAAGATCCAACA
ATGGCCACATTCTCGACCCGATTGCCCGTCCCTTTGGAATGGTTCTTCGA
ATCCCTGTGATCAGTGTTACTGCTACGTGTGTGATGTGCCCGTAGGAAGA
TGTGATGATATCTCATTGCACGCTGCAGCGGACGGGAGGACCCCGGATTG
GGCACAGACAAAACGCCGTCGCCGCGCACTGGCGCAGACTTGGTTGGATA
TTCCAGATCTCGTGGATTTACTAGTTTCGTTCTCCGTCGACGAAAGCCAG
TTATGCATAAAGCAAAACACTCGTGCCTCTTTTGAAGTTCGATCGCCCAC
ATCGATTAGTCCTGAAGACAAAGATTTTGTGACTGAAAAGGTCGCGAAAA
AGCTAGACTTCGAAGGCGAAAACAGCGGTGGAGACTTGTACGCCGGCACA
GAAATTGACGATGCAGCAGCAGGTGTCGACGACTTGTTGCTTCATAGCCT
CAGCAAGGTGAAGATAGAGCTGGAAAGTGACAAGACGGGAAATTTTGAAT
GA
back to top