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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2850.Phatr49437 |
PFAMs | NAD_binding_10 |
Max annot lvl | 2836|Bacillariophyta |
Evalue | 2.74e-39 |
EggNOG OGs | COG0702@1|root,KOG1203@2759|Eukaryota,2XCWY@2836|Bacillariophyta |
Description | NAD(P)H-binding |
COG category | G |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp MSLSCFALSNPLPKRSFKRCSQLTSRRPILASQAGVLGATGGLGRIIVER LLDGIRSSSSPVTSVNAFARDPLKAAKFLPSNDPTLLITKLPSSEDSQSL RNAFRGISYMIVCVGTTAFPTKAWRNGNTPTAIDDISVSRWMGALDKQSI RRIVYVSSIGVGRKSSFPFFILNSFGVLDAKRRGESHVVEAAHRLSCSYA ILRPGRLVGGPNTNVGTLELKPDLRKQSVKFAVGDCVNGDMSRFATAEIA AIATTWDTAKDLDMCFVHTEGEALSQEQLKEKMKDCEVTERQKSSQG* back to topspliced messenger RNA >Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004442_pilon:642826..643719- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGTTGTCCTGCTTCGCACTTTCCAATCCCCTTCCGAAGCGTTCCTT CAAAAGATGTTCGCAGCTCACCTCTCGAAGACCAATTCTTGCGTCACAGG CTGGCGTTTTAGGCGCTACTGGCGGATTGGGCAGAATCATAGTGGAACGC CTGTTAGACGGCATTCGATCCTCTTCATCTCCAGTAACTTCTGTGAACGC GTTTGCGCGAGACCCACTAAAGGCTGCCAAATTCTTACCATCTAATGACC CCACGCTTCTCATCACGAAGCTTCCGTCTTCCGAAGATTCTCAAAGCTTA CGAAATGCGTTCCGTGGCATATCTTATATGATTGTCTGCGTGGGAACAAC AGCATTCCCAACGAAAGCATGGCGTAATGGAAATACCCCGACCGCGATTG ATGATATATCTGTCTCACGTTGGATGGGGGCGCTCGACAAGCAGTCTATA CGTCGCATAGTCTACGTATCATCTATTGGAGTGGGGCGTAAATCTTCTTT TCCATTTTTCATCCTAAATTCTTTCGGCGTACTCGATGCTAAGCGACGAG GTGAATCGCATGTGGTTGAAGCGGCACACCGTCTTTCTTGTTCTTATGCT ATCCTTCGTCCCGGCAGACTTGTCGGAGGACCAAACACCAATGTTGGTAC TTTAGAGTTGAAACCCGACCTGCGTAAGCAAAGCGTAAAATTTGCAGTCG GAGACTGTGTAAATGGAGATATGAGCAGATTTGCCACGGCAGAAATCGCT GCTATTGCTACAACGTGGGATACTGCGAAAGATCTTGATATGTGTTTTGT GCACACAGAAGGAGAGGCTCTCAGCCAAGAACAGCTAAAAGAGAAAATGA AAGATTGTGAAGTAACTGAAAGACAAAAATCGTCTCAAGGATAA back to topprotein sequence of Gchil10058.t1 >Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MSLSCFALSNPLPKRSFKRCSQLTSRRPILASQAGVLGATGGLGRIIVER LLDGIRSSSSPVTSVNAFARDPLKAAKFLPSNDPTLLITKLPSSEDSQSL RNAFRGISYMIVCVGTTAFPTKAWRNGNTPTAIDDISVSRWMGALDKQSI RRIVYVSSIGVGRKSSFPFFILNSFGVLDAKRRGESHVVEAAHRLSCSYA ILRPGRLVGGPNTNVGTLELKPDLRKQSVKFAVGDCVNGDMSRFATAEIA AIATTWDTAKDLDMCFVHTEGEALSQEQLKEKMKDCEVTERQKSSQG* back to topmRNA from alignment at tig00004442_pilon:642826..643719- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004442_pilon:642826..643719- (Gracilaria chilensis NLEC103_M9 male) ATGTCGTTGTCCTGCTTCGCACTTTCCAATCCCCTTCCGAAGCGTTCCTT
CAAAAGATGTTCGCAGCTCACCTCTCGAAGACCAATTCTTGCGTCACAGG
CTGGCGTTTTAGGCGCTACTGGCGGATTGGGCAGAATCATAGTGGAACGC
CTGTTAGACGGCATTCGATCCTCTTCATCTCCAGTAACTTCTGTGAACGC
GTTTGCGCGAGACCCACTAAAGGCTGCCAAATTCTTACCATCTAATGACC
CCACGCTTCTCATCACGAAGCTTCCGTCTTCCGAAGATTCTCAAAGCTTA
CGAAATGCGTTCCGTGGCATATCTTATATGATTGTCTGCGTGGGAACAAC
AGCATTCCCAACGAAAGCATGGCGTAATGGAAATACCCCGACCGCGATTG
ATGATATATCTGTCTCACGTTGGATGGGGGCGCTCGACAAGCAGTCTATA
CGTCGCATAGTCTACGTATCATCTATTGGAGTGGGGCGTAAATCTTCTTT
TCCATTTTTCATCCTAAATTCTTTCGGCGTACTCGATGCTAAGCGACGAG
GTGAATCGCATGTGGTTGAAGCGGCACACCGTCTTTCTTGTTCTTATGCT
ATCCTTCGTCCCGGCAGACTTGTCGGAGGACCAAACACCAATGTTGGTAC
TTTAGAGTTGAAACCCGACCTGCGTAAGCAAAGCGTAAAATTTGCAGTCG
GAGACTGTGTAAATGGAGATATGAGCAGATTTGCCACGGCAGAAATCGCT
GCTATTGCTACAACGTGGGATACTGCGAAAGATCTTGATATGTGTTTTGT
GCACACAGAAGGAGAGGCTCTCAGCCAAGAACAGCTAAAAGAGAAAATGA
AAGATTGTGAAGTAACTGAAAGACAAAAATCGTCTCAAGGATAA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:642826..643719- >Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00004442_pilon:642826..643719- (Gracilaria chilensis NLEC103_M9 male) ATGTCGTTGTCCTGCTTCGCACTTTCCAATCCCCTTCCGAAGCGTTCCTT CAAAAGATGTTCGCAGCTCACCTCTCGAAGACCAATTCTTGCGTCACAGG CTGGCGTTTTAGGCGCTACTGGCGGATTGGGCAGAATCATAGTGGAACGC CTGTTAGACGGCATTCGATCCTCTTCATCTCCAGTAACTTCTGTGAACGC GTTTGCGCGAGACCCACTAAAGGCTGCCAAATTCTTACCATCTAATGACC CCACGCTTCTCATCACGAAGCTTCCGTCTTCCGAAGATTCTCAAAGCTTA CGAAATGCGTTCCGTGGCATATCTTATATGATTGTCTGCGTGGGAACAAC AGCATTCCCAACGAAAGCATGGCGTAATGGAAATACCCCGACCGCGATTG ATGATATATCTGTCTCACGTTGGATGGGGGCGCTCGACAAGCAGTCTATA CGTCGCATAGTCTACGTATCATCTATTGGAGTGGGGCGTAAATCTTCTTT TCCATTTTTCATCCTAAATTCTTTCGGCGTACTCGATGCTAAGCGACGAG GTGAATCGCATGTGGTTGAAGCGGCACACCGTCTTTCTTGTTCTTATGCT ATCCTTCGTCCCGGCAGACTTGTCGGAGGACCAAACACCAATGTTGGTAC TTTAGAGTTGAAACCCGACCTGCGTAAGCAAAGCGTAAAATTTGCAGTCG GAGACTGTGTAAATGGAGATATGAGCAGATTTGCCACGGCAGAAATCGCT GCTATTGCTACAACGTGGGATACTGCGAAAGATCTTGATATGTGTTTTGT GCACACAGAAGGAGAGGCTCTCAGCCAAGAACAGCTAAAAGAGAAAATGA AAGATTGTGAAGTAACTGAAAGACAAAAATCGTCTCAAGGATAA back to top
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