Gchil10058.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10058.t1
Unique NameGchil10058.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:642826..643719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr49437
PFAMsNAD_binding_10
Max annot lvl2836|Bacillariophyta
Evalue2.74e-39
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota,2XCWY@2836|Bacillariophyta
DescriptionNAD(P)H-binding
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10058Gchil10058Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 642826..643719 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10058.t1.stop1Gchil10058.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 642826..642828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10058.t1.CDS1Gchil10058.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 642826..643719 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10058.t1.exon1Gchil10058.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 642826..643719 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10058.t1.start1Gchil10058.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 643717..643719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10058.t1Gchil10058.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 642826..643719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MSLSCFALSNPLPKRSFKRCSQLTSRRPILASQAGVLGATGGLGRIIVER
LLDGIRSSSSPVTSVNAFARDPLKAAKFLPSNDPTLLITKLPSSEDSQSL
RNAFRGISYMIVCVGTTAFPTKAWRNGNTPTAIDDISVSRWMGALDKQSI
RRIVYVSSIGVGRKSSFPFFILNSFGVLDAKRRGESHVVEAAHRLSCSYA
ILRPGRLVGGPNTNVGTLELKPDLRKQSVKFAVGDCVNGDMSRFATAEIA
AIATTWDTAKDLDMCFVHTEGEALSQEQLKEKMKDCEVTERQKSSQG*
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spliced messenger RNA

>Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004442_pilon:642826..643719- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGTCCTGCTTCGCACTTTCCAATCCCCTTCCGAAGCGTTCCTT
CAAAAGATGTTCGCAGCTCACCTCTCGAAGACCAATTCTTGCGTCACAGG
CTGGCGTTTTAGGCGCTACTGGCGGATTGGGCAGAATCATAGTGGAACGC
CTGTTAGACGGCATTCGATCCTCTTCATCTCCAGTAACTTCTGTGAACGC
GTTTGCGCGAGACCCACTAAAGGCTGCCAAATTCTTACCATCTAATGACC
CCACGCTTCTCATCACGAAGCTTCCGTCTTCCGAAGATTCTCAAAGCTTA
CGAAATGCGTTCCGTGGCATATCTTATATGATTGTCTGCGTGGGAACAAC
AGCATTCCCAACGAAAGCATGGCGTAATGGAAATACCCCGACCGCGATTG
ATGATATATCTGTCTCACGTTGGATGGGGGCGCTCGACAAGCAGTCTATA
CGTCGCATAGTCTACGTATCATCTATTGGAGTGGGGCGTAAATCTTCTTT
TCCATTTTTCATCCTAAATTCTTTCGGCGTACTCGATGCTAAGCGACGAG
GTGAATCGCATGTGGTTGAAGCGGCACACCGTCTTTCTTGTTCTTATGCT
ATCCTTCGTCCCGGCAGACTTGTCGGAGGACCAAACACCAATGTTGGTAC
TTTAGAGTTGAAACCCGACCTGCGTAAGCAAAGCGTAAAATTTGCAGTCG
GAGACTGTGTAAATGGAGATATGAGCAGATTTGCCACGGCAGAAATCGCT
GCTATTGCTACAACGTGGGATACTGCGAAAGATCTTGATATGTGTTTTGT
GCACACAGAAGGAGAGGCTCTCAGCCAAGAACAGCTAAAAGAGAAAATGA
AAGATTGTGAAGTAACTGAAAGACAAAAATCGTCTCAAGGATAA
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protein sequence of Gchil10058.t1

>Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MSLSCFALSNPLPKRSFKRCSQLTSRRPILASQAGVLGATGGLGRIIVER
LLDGIRSSSSPVTSVNAFARDPLKAAKFLPSNDPTLLITKLPSSEDSQSL
RNAFRGISYMIVCVGTTAFPTKAWRNGNTPTAIDDISVSRWMGALDKQSI
RRIVYVSSIGVGRKSSFPFFILNSFGVLDAKRRGESHVVEAAHRLSCSYA
ILRPGRLVGGPNTNVGTLELKPDLRKQSVKFAVGDCVNGDMSRFATAEIA
AIATTWDTAKDLDMCFVHTEGEALSQEQLKEKMKDCEVTERQKSSQG*
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mRNA from alignment at tig00004442_pilon:642826..643719-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004442_pilon:642826..643719- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTGTCCTGCTTCGCACTTTCCAATCCCCTTCCGAAGCGTTCCTT
CAAAAGATGTTCGCAGCTCACCTCTCGAAGACCAATTCTTGCGTCACAGG
CTGGCGTTTTAGGCGCTACTGGCGGATTGGGCAGAATCATAGTGGAACGC
CTGTTAGACGGCATTCGATCCTCTTCATCTCCAGTAACTTCTGTGAACGC
GTTTGCGCGAGACCCACTAAAGGCTGCCAAATTCTTACCATCTAATGACC
CCACGCTTCTCATCACGAAGCTTCCGTCTTCCGAAGATTCTCAAAGCTTA
CGAAATGCGTTCCGTGGCATATCTTATATGATTGTCTGCGTGGGAACAAC
AGCATTCCCAACGAAAGCATGGCGTAATGGAAATACCCCGACCGCGATTG
ATGATATATCTGTCTCACGTTGGATGGGGGCGCTCGACAAGCAGTCTATA
CGTCGCATAGTCTACGTATCATCTATTGGAGTGGGGCGTAAATCTTCTTT
TCCATTTTTCATCCTAAATTCTTTCGGCGTACTCGATGCTAAGCGACGAG
GTGAATCGCATGTGGTTGAAGCGGCACACCGTCTTTCTTGTTCTTATGCT
ATCCTTCGTCCCGGCAGACTTGTCGGAGGACCAAACACCAATGTTGGTAC
TTTAGAGTTGAAACCCGACCTGCGTAAGCAAAGCGTAAAATTTGCAGTCG
GAGACTGTGTAAATGGAGATATGAGCAGATTTGCCACGGCAGAAATCGCT
GCTATTGCTACAACGTGGGATACTGCGAAAGATCTTGATATGTGTTTTGT
GCACACAGAAGGAGAGGCTCTCAGCCAAGAACAGCTAAAAGAGAAAATGA
AAGATTGTGAAGTAACTGAAAGACAAAAATCGTCTCAAGGATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:642826..643719-

>Gchil10058.t1 ID=Gchil10058.t1|Name=Gchil10058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00004442_pilon:642826..643719- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTGTCCTGCTTCGCACTTTCCAATCCCCTTCCGAAGCGTTCCTT
CAAAAGATGTTCGCAGCTCACCTCTCGAAGACCAATTCTTGCGTCACAGG
CTGGCGTTTTAGGCGCTACTGGCGGATTGGGCAGAATCATAGTGGAACGC
CTGTTAGACGGCATTCGATCCTCTTCATCTCCAGTAACTTCTGTGAACGC
GTTTGCGCGAGACCCACTAAAGGCTGCCAAATTCTTACCATCTAATGACC
CCACGCTTCTCATCACGAAGCTTCCGTCTTCCGAAGATTCTCAAAGCTTA
CGAAATGCGTTCCGTGGCATATCTTATATGATTGTCTGCGTGGGAACAAC
AGCATTCCCAACGAAAGCATGGCGTAATGGAAATACCCCGACCGCGATTG
ATGATATATCTGTCTCACGTTGGATGGGGGCGCTCGACAAGCAGTCTATA
CGTCGCATAGTCTACGTATCATCTATTGGAGTGGGGCGTAAATCTTCTTT
TCCATTTTTCATCCTAAATTCTTTCGGCGTACTCGATGCTAAGCGACGAG
GTGAATCGCATGTGGTTGAAGCGGCACACCGTCTTTCTTGTTCTTATGCT
ATCCTTCGTCCCGGCAGACTTGTCGGAGGACCAAACACCAATGTTGGTAC
TTTAGAGTTGAAACCCGACCTGCGTAAGCAAAGCGTAAAATTTGCAGTCG
GAGACTGTGTAAATGGAGATATGAGCAGATTTGCCACGGCAGAAATCGCT
GCTATTGCTACAACGTGGGATACTGCGAAAGATCTTGATATGTGTTTTGT
GCACACAGAAGGAGAGGCTCTCAGCCAAGAACAGCTAAAAGAGAAAATGA
AAGATTGTGAAGTAACTGAAAGACAAAAATCGTCTCAAGGATAA
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