Gchil10050.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10050.t1
Unique NameGchil10050.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:573482..574960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ185CT
Preferred namenuoF
PFAMsComplex1_51K,NADH_4Fe-4S,SLBB
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03942
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue1.09e-267
EggNOG OGsCOG1894@1|root,KOG2658@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionFMN binding
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10050Gchil10050Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 573482..574960 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10050.t1.start1Gchil10050.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 573482..573484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10050.t1.CDS1Gchil10050.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 573482..574960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10050.t1.exon1Gchil10050.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 573482..574960 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10050.t1.stop1Gchil10050.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 574958..574960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10050.t1Gchil10050.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 573482..574960 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10050.t1 ID=Gchil10050.t1|Name=Gchil10050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=493bp
MALRSAFTLALQRSRGAGSNSVRSLATLRSTTPKQVAAAAPEPTPKSEEA
WRVSNYSGSHGGLSDKDRIFTNLYRDGEWRLEGALKRGDWHKTKDLVQMG
RDWIINEIKASGLRGRGGAGFPSGLKYSFMPKGNPDGRPNYLVVNADESE
PGTCKDREIMRSDPHKLVEGCLIVGRAMSARAAYIYIRGEFIDERKNLEA
AVEEAYAKGLLGKNASGSGYDFDVYVTHGAGAYICGEETAMIESLEGKQG
KPRLKPPFPANIGLYGCPTTVTNVETVAVVPTILRRGADWFASLGRKGNA
GTKLFCISGHVNNPCTVEEEMSVPLRELIDRHCGGVRGGWDNLLAIIPGG
SSVQLMPKHICEDVFMDFDSLKAVGSGLGTAAVIVMDKSTDVIAAISRLS
YFYKHESCGQCTPCREGTGWLWMLMERMKEGDAKVEEIDMLWEITKQIEG
HTICALGDAAAWPVQGVIRHFRPEFERRIAEFEAKNVRATAL*
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spliced messenger RNA

>Gchil10050.t1 ID=Gchil10050.t1|Name=Gchil10050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00004442_pilon:573482..574960+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGAGATCTGCATTCACGCTTGCGCTACAACGCAGTCGTGGCGC
CGGCTCAAATTCTGTGCGCTCCCTGGCTACGTTGAGGTCAACCACGCCGA
AGCAAGTGGCAGCTGCTGCGCCCGAGCCTACTCCGAAAAGCGAAGAAGCA
TGGAGAGTTTCAAACTACTCTGGTTCGCATGGGGGTTTATCGGACAAGGA
TCGCATATTCACAAACCTCTACCGCGACGGAGAATGGCGCCTCGAAGGAG
CTTTAAAGCGGGGGGATTGGCATAAAACGAAAGACCTCGTACAAATGGGA
CGTGATTGGATAATCAATGAAATCAAAGCTTCAGGCCTTCGTGGACGTGG
GGGAGCAGGATTTCCTTCAGGACTGAAGTACTCGTTCATGCCCAAAGGAA
ACCCTGACGGGAGGCCTAATTACCTGGTCGTCAACGCAGATGAATCTGAG
CCAGGAACTTGCAAGGACCGCGAAATCATGCGATCGGATCCTCACAAGCT
AGTCGAGGGCTGCCTTATAGTTGGACGAGCTATGAGCGCTCGGGCAGCAT
ATATATACATCCGTGGAGAATTCATCGACGAAAGAAAGAACCTCGAAGCA
GCGGTTGAGGAAGCTTACGCGAAGGGTCTCCTCGGCAAGAACGCCAGTGG
TTCTGGATACGATTTTGATGTTTACGTTACTCATGGCGCCGGTGCGTATA
TCTGCGGTGAAGAAACTGCAATGATTGAAAGCTTGGAAGGAAAACAAGGA
AAGCCGCGCCTAAAGCCGCCATTCCCTGCAAATATTGGTCTTTACGGATG
TCCGACGACGGTGACAAATGTCGAAACAGTCGCCGTTGTGCCCACTATTC
TCCGTCGCGGTGCAGATTGGTTTGCCTCATTGGGGCGTAAAGGGAATGCT
GGCACGAAGCTGTTCTGTATTTCTGGCCACGTTAACAATCCGTGCACCGT
AGAGGAAGAAATGTCGGTGCCATTACGCGAATTGATCGATCGGCACTGTG
GAGGTGTCCGTGGAGGATGGGATAATCTACTTGCTATTATCCCTGGAGGC
TCCTCTGTTCAGTTAATGCCGAAGCACATCTGTGAGGATGTGTTCATGGA
TTTTGATTCATTGAAGGCTGTTGGGTCTGGATTGGGCACTGCAGCTGTCA
TTGTTATGGACAAGAGCACCGATGTCATTGCGGCGATTTCACGCCTGTCG
TATTTTTACAAGCATGAATCGTGCGGACAGTGCACCCCGTGCCGTGAAGG
TACTGGCTGGTTGTGGATGCTCATGGAACGAATGAAAGAAGGAGATGCCA
AGGTCGAAGAAATCGATATGCTCTGGGAAATTACCAAGCAGATAGAGGGA
CATACTATATGCGCCCTAGGCGATGCCGCTGCCTGGCCTGTTCAAGGGGT
AATTCGTCATTTCCGTCCAGAATTTGAAAGACGCATAGCGGAATTCGAAG
CCAAAAACGTGCGAGCGACGGCTCTTTGA
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protein sequence of Gchil10050.t1

>Gchil10050.t1 ID=Gchil10050.t1|Name=Gchil10050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=493bp
MALRSAFTLALQRSRGAGSNSVRSLATLRSTTPKQVAAAAPEPTPKSEEA
WRVSNYSGSHGGLSDKDRIFTNLYRDGEWRLEGALKRGDWHKTKDLVQMG
RDWIINEIKASGLRGRGGAGFPSGLKYSFMPKGNPDGRPNYLVVNADESE
PGTCKDREIMRSDPHKLVEGCLIVGRAMSARAAYIYIRGEFIDERKNLEA
AVEEAYAKGLLGKNASGSGYDFDVYVTHGAGAYICGEETAMIESLEGKQG
KPRLKPPFPANIGLYGCPTTVTNVETVAVVPTILRRGADWFASLGRKGNA
GTKLFCISGHVNNPCTVEEEMSVPLRELIDRHCGGVRGGWDNLLAIIPGG
SSVQLMPKHICEDVFMDFDSLKAVGSGLGTAAVIVMDKSTDVIAAISRLS
YFYKHESCGQCTPCREGTGWLWMLMERMKEGDAKVEEIDMLWEITKQIEG
HTICALGDAAAWPVQGVIRHFRPEFERRIAEFEAKNVRATAL*
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mRNA from alignment at tig00004442_pilon:573482..574960+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10050.t1 ID=Gchil10050.t1|Name=Gchil10050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00004442_pilon:573482..574960+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTGAGATCTGCATTCACGCTTGCGCTACAACGCAGTCGTGGCGC
CGGCTCAAATTCTGTGCGCTCCCTGGCTACGTTGAGGTCAACCACGCCGA
AGCAAGTGGCAGCTGCTGCGCCCGAGCCTACTCCGAAAAGCGAAGAAGCA
TGGAGAGTTTCAAACTACTCTGGTTCGCATGGGGGTTTATCGGACAAGGA
TCGCATATTCACAAACCTCTACCGCGACGGAGAATGGCGCCTCGAAGGAG
CTTTAAAGCGGGGGGATTGGCATAAAACGAAAGACCTCGTACAAATGGGA
CGTGATTGGATAATCAATGAAATCAAAGCTTCAGGCCTTCGTGGACGTGG
GGGAGCAGGATTTCCTTCAGGACTGAAGTACTCGTTCATGCCCAAAGGAA
ACCCTGACGGGAGGCCTAATTACCTGGTCGTCAACGCAGATGAATCTGAG
CCAGGAACTTGCAAGGACCGCGAAATCATGCGATCGGATCCTCACAAGCT
AGTCGAGGGCTGCCTTATAGTTGGACGAGCTATGAGCGCTCGGGCAGCAT
ATATATACATCCGTGGAGAATTCATCGACGAAAGAAAGAACCTCGAAGCA
GCGGTTGAGGAAGCTTACGCGAAGGGTCTCCTCGGCAAGAACGCCAGTGG
TTCTGGATACGATTTTGATGTTTACGTTACTCATGGCGCCGGTGCGTATA
TCTGCGGTGAAGAAACTGCAATGATTGAAAGCTTGGAAGGAAAACAAGGA
AAGCCGCGCCTAAAGCCGCCATTCCCTGCAAATATTGGTCTTTACGGATG
TCCGACGACGGTGACAAATGTCGAAACAGTCGCCGTTGTGCCCACTATTC
TCCGTCGCGGTGCAGATTGGTTTGCCTCATTGGGGCGTAAAGGGAATGCT
GGCACGAAGCTGTTCTGTATTTCTGGCCACGTTAACAATCCGTGCACCGT
AGAGGAAGAAATGTCGGTGCCATTACGCGAATTGATCGATCGGCACTGTG
GAGGTGTCCGTGGAGGATGGGATAATCTACTTGCTATTATCCCTGGAGGC
TCCTCTGTTCAGTTAATGCCGAAGCACATCTGTGAGGATGTGTTCATGGA
TTTTGATTCATTGAAGGCTGTTGGGTCTGGATTGGGCACTGCAGCTGTCA
TTGTTATGGACAAGAGCACCGATGTCATTGCGGCGATTTCACGCCTGTCG
TATTTTTACAAGCATGAATCGTGCGGACAGTGCACCCCGTGCCGTGAAGG
TACTGGCTGGTTGTGGATGCTCATGGAACGAATGAAAGAAGGAGATGCCA
AGGTCGAAGAAATCGATATGCTCTGGGAAATTACCAAGCAGATAGAGGGA
CATACTATATGCGCCCTAGGCGATGCCGCTGCCTGGCCTGTTCAAGGGGT
AATTCGTCATTTCCGTCCAGAATTTGAAAGACGCATAGCGGAATTCGAAG
CCAAAAACGTGCGAGCGACGGCTCTTTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:573482..574960+

>Gchil10050.t1 ID=Gchil10050.t1|Name=Gchil10050.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00004442_pilon:573482..574960+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTGAGATCTGCATTCACGCTTGCGCTACAACGCAGTCGTGGCGC
CGGCTCAAATTCTGTGCGCTCCCTGGCTACGTTGAGGTCAACCACGCCGA
AGCAAGTGGCAGCTGCTGCGCCCGAGCCTACTCCGAAAAGCGAAGAAGCA
TGGAGAGTTTCAAACTACTCTGGTTCGCATGGGGGTTTATCGGACAAGGA
TCGCATATTCACAAACCTCTACCGCGACGGAGAATGGCGCCTCGAAGGAG
CTTTAAAGCGGGGGGATTGGCATAAAACGAAAGACCTCGTACAAATGGGA
CGTGATTGGATAATCAATGAAATCAAAGCTTCAGGCCTTCGTGGACGTGG
GGGAGCAGGATTTCCTTCAGGACTGAAGTACTCGTTCATGCCCAAAGGAA
ACCCTGACGGGAGGCCTAATTACCTGGTCGTCAACGCAGATGAATCTGAG
CCAGGAACTTGCAAGGACCGCGAAATCATGCGATCGGATCCTCACAAGCT
AGTCGAGGGCTGCCTTATAGTTGGACGAGCTATGAGCGCTCGGGCAGCAT
ATATATACATCCGTGGAGAATTCATCGACGAAAGAAAGAACCTCGAAGCA
GCGGTTGAGGAAGCTTACGCGAAGGGTCTCCTCGGCAAGAACGCCAGTGG
TTCTGGATACGATTTTGATGTTTACGTTACTCATGGCGCCGGTGCGTATA
TCTGCGGTGAAGAAACTGCAATGATTGAAAGCTTGGAAGGAAAACAAGGA
AAGCCGCGCCTAAAGCCGCCATTCCCTGCAAATATTGGTCTTTACGGATG
TCCGACGACGGTGACAAATGTCGAAACAGTCGCCGTTGTGCCCACTATTC
TCCGTCGCGGTGCAGATTGGTTTGCCTCATTGGGGCGTAAAGGGAATGCT
GGCACGAAGCTGTTCTGTATTTCTGGCCACGTTAACAATCCGTGCACCGT
AGAGGAAGAAATGTCGGTGCCATTACGCGAATTGATCGATCGGCACTGTG
GAGGTGTCCGTGGAGGATGGGATAATCTACTTGCTATTATCCCTGGAGGC
TCCTCTGTTCAGTTAATGCCGAAGCACATCTGTGAGGATGTGTTCATGGA
TTTTGATTCATTGAAGGCTGTTGGGTCTGGATTGGGCACTGCAGCTGTCA
TTGTTATGGACAAGAGCACCGATGTCATTGCGGCGATTTCACGCCTGTCG
TATTTTTACAAGCATGAATCGTGCGGACAGTGCACCCCGTGCCGTGAAGG
TACTGGCTGGTTGTGGATGCTCATGGAACGAATGAAAGAAGGAGATGCCA
AGGTCGAAGAAATCGATATGCTCTGGGAAATTACCAAGCAGATAGAGGGA
CATACTATATGCGCCCTAGGCGATGCCGCTGCCTGGCCTGTTCAAGGGGT
AATTCGTCATTTCCGTCCAGAATTTGAAAGACGCATAGCGGAATTCGAAG
CCAAAAACGTGCGAGCGACGGCTCTTTGA
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