Gchil10048.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10048.t1
Unique NameGchil10048.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:568422..568967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004490119.1
PFAMsPrefoldin
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue1.01e-08
EggNOG OGsKOG3047@1|root,KOG3047@2759|Eukaryota,37TTF@33090|Viridiplantae,3GI5Y@35493|Streptophyta,4JT8Q@91835|fabids
DescriptionProtein UXT homolog
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10048Gchil10048Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 568422..568967 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10048.t1.stop1Gchil10048.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 568422..568424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10048.t1.CDS1Gchil10048.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 568422..568967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10048.t1.exon1Gchil10048.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 568422..568967 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10048.t1.start1Gchil10048.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 568965..568967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10048.t1Gchil10048.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 568422..568967 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10048.t1 ID=Gchil10048.t1|Name=Gchil10048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MKKELTIENGEPRDGETPISMEEANAAIQNYSRALERRLKPTLASTSSLR
DNALKEVADLEQTDRALRVVEKEFRTSRARPGKPLFETRVNLGEDFFVRA
EASRTEKVVLDIGLGVFVQVDFREASKLIQQRQQLFRSIADTQSKKVAEI
QAMVEGVVKCLSALQLCCGTKEDGEQDERET*
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spliced messenger RNA

>Gchil10048.t1 ID=Gchil10048.t1|Name=Gchil10048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004442_pilon:568422..568967- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGGAACTTACTATCGAAAACGGAGAGCCCAGGGATGGAGAAAC
CCCAATATCAATGGAAGAAGCAAACGCAGCAATTCAGAATTACAGCAGAG
CATTGGAAAGGCGACTGAAACCAACGCTAGCTTCTACATCCTCTCTACGG
GATAACGCCTTGAAAGAGGTGGCGGATCTGGAACAAACTGACAGAGCATT
GCGTGTTGTAGAAAAAGAGTTTCGAACTTCTCGCGCTAGGCCTGGTAAAC
CACTGTTCGAAACCAGGGTTAACTTGGGCGAAGATTTCTTCGTGCGAGCA
GAAGCCAGCAGAACTGAGAAAGTAGTACTGGACATTGGACTGGGCGTTTT
TGTACAGGTTGATTTTCGCGAAGCGAGCAAGCTCATTCAACAGCGGCAGC
AGTTGTTTCGAAGCATTGCAGACACCCAAAGCAAGAAAGTGGCAGAAATA
CAGGCAATGGTCGAAGGAGTCGTGAAATGCCTCTCTGCGCTTCAATTGTG
CTGTGGAACAAAGGAAGATGGCGAACAGGATGAAAGAGAGACATGA
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protein sequence of Gchil10048.t1

>Gchil10048.t1 ID=Gchil10048.t1|Name=Gchil10048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MKKELTIENGEPRDGETPISMEEANAAIQNYSRALERRLKPTLASTSSLR
DNALKEVADLEQTDRALRVVEKEFRTSRARPGKPLFETRVNLGEDFFVRA
EASRTEKVVLDIGLGVFVQVDFREASKLIQQRQQLFRSIADTQSKKVAEI
QAMVEGVVKCLSALQLCCGTKEDGEQDERET*
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mRNA from alignment at tig00004442_pilon:568422..568967-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10048.t1 ID=Gchil10048.t1|Name=Gchil10048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004442_pilon:568422..568967- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAAGGAACTTACTATCGAAAACGGAGAGCCCAGGGATGGAGAAAC
CCCAATATCAATGGAAGAAGCAAACGCAGCAATTCAGAATTACAGCAGAG
CATTGGAAAGGCGACTGAAACCAACGCTAGCTTCTACATCCTCTCTACGG
GATAACGCCTTGAAAGAGGTGGCGGATCTGGAACAAACTGACAGAGCATT
GCGTGTTGTAGAAAAAGAGTTTCGAACTTCTCGCGCTAGGCCTGGTAAAC
CACTGTTCGAAACCAGGGTTAACTTGGGCGAAGATTTCTTCGTGCGAGCA
GAAGCCAGCAGAACTGAGAAAGTAGTACTGGACATTGGACTGGGCGTTTT
TGTACAGGTTGATTTTCGCGAAGCGAGCAAGCTCATTCAACAGCGGCAGC
AGTTGTTTCGAAGCATTGCAGACACCCAAAGCAAGAAAGTGGCAGAAATA
CAGGCAATGGTCGAAGGAGTCGTGAAATGCCTCTCTGCGCTTCAATTGTG
CTGTGGAACAAAGGAAGATGGCGAACAGGATGAAAGAGAGACATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:568422..568967-

>Gchil10048.t1 ID=Gchil10048.t1|Name=Gchil10048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00004442_pilon:568422..568967- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAAGGAACTTACTATCGAAAACGGAGAGCCCAGGGATGGAGAAAC
CCCAATATCAATGGAAGAAGCAAACGCAGCAATTCAGAATTACAGCAGAG
CATTGGAAAGGCGACTGAAACCAACGCTAGCTTCTACATCCTCTCTACGG
GATAACGCCTTGAAAGAGGTGGCGGATCTGGAACAAACTGACAGAGCATT
GCGTGTTGTAGAAAAAGAGTTTCGAACTTCTCGCGCTAGGCCTGGTAAAC
CACTGTTCGAAACCAGGGTTAACTTGGGCGAAGATTTCTTCGTGCGAGCA
GAAGCCAGCAGAACTGAGAAAGTAGTACTGGACATTGGACTGGGCGTTTT
TGTACAGGTTGATTTTCGCGAAGCGAGCAAGCTCATTCAACAGCGGCAGC
AGTTGTTTCGAAGCATTGCAGACACCCAAAGCAAGAAAGTGGCAGAAATA
CAGGCAATGGTCGAAGGAGTCGTGAAATGCCTCTCTGCGCTTCAATTGTG
CTGTGGAACAAAGGAAGATGGCGAACAGGATGAAAGAGAGACATGA
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