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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 3055.EDP04616 |
PFAMs | dUTPase |
Max annot lvl | 3041|Chlorophyta |
KEGG rclass | RC00002 |
KEGG ko | ko:K01520 |
KEGG Reaction | R02100,R11896 |
KEGG Pathway | ko00240,ko00983,ko01100,map00240,map00983,map01100 |
KEGG Module | M00053 |
Evalue | 6.63e-60 |
EggNOG OGs | COG0756@1|root,KOG3370@2759|Eukaryota,37TVP@33090|Viridiplantae,34KHT@3041|Chlorophyta |
EC | 3.6.1.23 |
Description | dUTPase |
COG category | F |
BRITE | ko00000,ko00001,ko00002,ko01000,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=194bp MKDTTNATAPGTAAAAAPDSVLPAKRELSPKPADSPPKRECLEAPGASEP SLKVLRLHEKATLPKRGSPMSAGFDLAAGEDTVIPARGRAVVKTGLKIAV PSGCYGRVAPRSGLAVKKFIDTGAGVIDADYRGEVGVVLFNFSDDEFKVQ VGDRVAQLVIEKICMGAVDEVKELDETTRGDGGFGSTGVETKA* back to topspliced messenger RNA >Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004442_pilon:549500..550081+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGGATACTACCAACGCCACTGCTCCCGGAACAGCTGCTGCAGCAGC TCCCGATTCTGTCTTGCCGGCAAAGCGAGAGCTTTCGCCGAAGCCCGCAG ATTCACCCCCCAAGCGTGAGTGTCTTGAAGCACCCGGTGCTTCAGAGCCA TCGCTCAAGGTACTGAGACTGCACGAAAAGGCCACACTTCCGAAGCGTGG GTCTCCCATGTCGGCTGGTTTTGACCTTGCCGCAGGAGAGGACACAGTCA TTCCGGCTCGAGGTCGCGCCGTCGTGAAGACTGGCTTGAAAATCGCTGTA CCGTCAGGTTGTTATGGTCGTGTTGCACCGCGTTCTGGCCTTGCTGTGAA GAAGTTTATTGACACAGGAGCAGGTGTTATTGATGCAGACTATCGTGGAG AGGTTGGTGTGGTTCTGTTCAACTTTAGTGACGACGAATTCAAGGTTCAG GTGGGCGATCGAGTTGCTCAGCTGGTTATTGAGAAAATCTGCATGGGAGC TGTTGACGAGGTCAAGGAGCTTGATGAAACTACACGGGGTGATGGTGGTT TCGGGTCGACAGGTGTGGAGACCAAGGCCTGA back to topprotein sequence of Gchil10042.t1 >Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=194bp
MKDTTNATAPGTAAAAAPDSVLPAKRELSPKPADSPPKRECLEAPGASEP SLKVLRLHEKATLPKRGSPMSAGFDLAAGEDTVIPARGRAVVKTGLKIAV PSGCYGRVAPRSGLAVKKFIDTGAGVIDADYRGEVGVVLFNFSDDEFKVQ VGDRVAQLVIEKICMGAVDEVKELDETTRGDGGFGSTGVETKA* back to topmRNA from alignment at tig00004442_pilon:549500..550081+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004442_pilon:549500..550081+ (Gracilaria chilensis NLEC103_M9 male) ATGAAGGATACTACCAACGCCACTGCTCCCGGAACAGCTGCTGCAGCAGC
TCCCGATTCTGTCTTGCCGGCAAAGCGAGAGCTTTCGCCGAAGCCCGCAG
ATTCACCCCCCAAGCGTGAGTGTCTTGAAGCACCCGGTGCTTCAGAGCCA
TCGCTCAAGGTACTGAGACTGCACGAAAAGGCCACACTTCCGAAGCGTGG
GTCTCCCATGTCGGCTGGTTTTGACCTTGCCGCAGGAGAGGACACAGTCA
TTCCGGCTCGAGGTCGCGCCGTCGTGAAGACTGGCTTGAAAATCGCTGTA
CCGTCAGGTTGTTATGGTCGTGTTGCACCGCGTTCTGGCCTTGCTGTGAA
GAAGTTTATTGACACAGGAGCAGGTGTTATTGATGCAGACTATCGTGGAG
AGGTTGGTGTGGTTCTGTTCAACTTTAGTGACGACGAATTCAAGGTTCAG
GTGGGCGATCGAGTTGCTCAGCTGGTTATTGAGAAAATCTGCATGGGAGC
TGTTGACGAGGTCAAGGAGCTTGATGAAACTACACGGGGTGATGGTGGTT
TCGGGTCGACAGGTGTGGAGACCAAGGCCTGA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:549500..550081+ >Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00004442_pilon:549500..550081+ (Gracilaria chilensis NLEC103_M9 male) ATGAAGGATACTACCAACGCCACTGCTCCCGGAACAGCTGCTGCAGCAGC TCCCGATTCTGTCTTGCCGGCAAAGCGAGAGCTTTCGCCGAAGCCCGCAG ATTCACCCCCCAAGCGTGAGTGTCTTGAAGCACCCGGTGCTTCAGAGCCA TCGCTCAAGGTACTGAGACTGCACGAAAAGGCCACACTTCCGAAGCGTGG GTCTCCCATGTCGGCTGGTTTTGACCTTGCCGCAGGAGAGGACACAGTCA TTCCGGCTCGAGGTCGCGCCGTCGTGAAGACTGGCTTGAAAATCGCTGTA CCGTCAGGTTGTTATGGTCGTGTTGCACCGCGTTCTGGCCTTGCTGTGAA GAAGTTTATTGACACAGGAGCAGGTGTTATTGATGCAGACTATCGTGGAG AGGTTGGTGTGGTTCTGTTCAACTTTAGTGACGACGAATTCAAGGTTCAG GTGGGCGATCGAGTTGCTCAGCTGGTTATTGAGAAAATCTGCATGGGAGC TGTTGACGAGGTCAAGGAGCTTGATGAAACTACACGGGGTGATGGTGGTT TCGGGTCGACAGGTGTGGAGACCAAGGCCTGA back to top
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