Gchil10042.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10042.t1
Unique NameGchil10042.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:549500..550081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP04616
PFAMsdUTPase
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002
KEGG koko:K01520
KEGG ReactionR02100,R11896
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00053
Evalue6.63e-60
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota,37TVP@33090|Viridiplantae,34KHT@3041|Chlorophyta
EC3.6.1.23
DescriptiondUTPase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10042Gchil10042Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 549500..550081 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10042.t1.start1Gchil10042.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 549500..549502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10042.t1.CDS1Gchil10042.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 549500..550081 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10042.t1.exon1Gchil10042.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 549500..550081 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10042.t1.stop1Gchil10042.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 550079..550081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10042.t1Gchil10042.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 549500..550081 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=194bp
MKDTTNATAPGTAAAAAPDSVLPAKRELSPKPADSPPKRECLEAPGASEP
SLKVLRLHEKATLPKRGSPMSAGFDLAAGEDTVIPARGRAVVKTGLKIAV
PSGCYGRVAPRSGLAVKKFIDTGAGVIDADYRGEVGVVLFNFSDDEFKVQ
VGDRVAQLVIEKICMGAVDEVKELDETTRGDGGFGSTGVETKA*
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spliced messenger RNA

>Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004442_pilon:549500..550081+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATACTACCAACGCCACTGCTCCCGGAACAGCTGCTGCAGCAGC
TCCCGATTCTGTCTTGCCGGCAAAGCGAGAGCTTTCGCCGAAGCCCGCAG
ATTCACCCCCCAAGCGTGAGTGTCTTGAAGCACCCGGTGCTTCAGAGCCA
TCGCTCAAGGTACTGAGACTGCACGAAAAGGCCACACTTCCGAAGCGTGG
GTCTCCCATGTCGGCTGGTTTTGACCTTGCCGCAGGAGAGGACACAGTCA
TTCCGGCTCGAGGTCGCGCCGTCGTGAAGACTGGCTTGAAAATCGCTGTA
CCGTCAGGTTGTTATGGTCGTGTTGCACCGCGTTCTGGCCTTGCTGTGAA
GAAGTTTATTGACACAGGAGCAGGTGTTATTGATGCAGACTATCGTGGAG
AGGTTGGTGTGGTTCTGTTCAACTTTAGTGACGACGAATTCAAGGTTCAG
GTGGGCGATCGAGTTGCTCAGCTGGTTATTGAGAAAATCTGCATGGGAGC
TGTTGACGAGGTCAAGGAGCTTGATGAAACTACACGGGGTGATGGTGGTT
TCGGGTCGACAGGTGTGGAGACCAAGGCCTGA
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protein sequence of Gchil10042.t1

>Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=194bp
MKDTTNATAPGTAAAAAPDSVLPAKRELSPKPADSPPKRECLEAPGASEP
SLKVLRLHEKATLPKRGSPMSAGFDLAAGEDTVIPARGRAVVKTGLKIAV
PSGCYGRVAPRSGLAVKKFIDTGAGVIDADYRGEVGVVLFNFSDDEFKVQ
VGDRVAQLVIEKICMGAVDEVKELDETTRGDGGFGSTGVETKA*
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mRNA from alignment at tig00004442_pilon:549500..550081+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004442_pilon:549500..550081+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGATACTACCAACGCCACTGCTCCCGGAACAGCTGCTGCAGCAGC
TCCCGATTCTGTCTTGCCGGCAAAGCGAGAGCTTTCGCCGAAGCCCGCAG
ATTCACCCCCCAAGCGTGAGTGTCTTGAAGCACCCGGTGCTTCAGAGCCA
TCGCTCAAGGTACTGAGACTGCACGAAAAGGCCACACTTCCGAAGCGTGG
GTCTCCCATGTCGGCTGGTTTTGACCTTGCCGCAGGAGAGGACACAGTCA
TTCCGGCTCGAGGTCGCGCCGTCGTGAAGACTGGCTTGAAAATCGCTGTA
CCGTCAGGTTGTTATGGTCGTGTTGCACCGCGTTCTGGCCTTGCTGTGAA
GAAGTTTATTGACACAGGAGCAGGTGTTATTGATGCAGACTATCGTGGAG
AGGTTGGTGTGGTTCTGTTCAACTTTAGTGACGACGAATTCAAGGTTCAG
GTGGGCGATCGAGTTGCTCAGCTGGTTATTGAGAAAATCTGCATGGGAGC
TGTTGACGAGGTCAAGGAGCTTGATGAAACTACACGGGGTGATGGTGGTT
TCGGGTCGACAGGTGTGGAGACCAAGGCCTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:549500..550081+

>Gchil10042.t1 ID=Gchil10042.t1|Name=Gchil10042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00004442_pilon:549500..550081+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGATACTACCAACGCCACTGCTCCCGGAACAGCTGCTGCAGCAGC
TCCCGATTCTGTCTTGCCGGCAAAGCGAGAGCTTTCGCCGAAGCCCGCAG
ATTCACCCCCCAAGCGTGAGTGTCTTGAAGCACCCGGTGCTTCAGAGCCA
TCGCTCAAGGTACTGAGACTGCACGAAAAGGCCACACTTCCGAAGCGTGG
GTCTCCCATGTCGGCTGGTTTTGACCTTGCCGCAGGAGAGGACACAGTCA
TTCCGGCTCGAGGTCGCGCCGTCGTGAAGACTGGCTTGAAAATCGCTGTA
CCGTCAGGTTGTTATGGTCGTGTTGCACCGCGTTCTGGCCTTGCTGTGAA
GAAGTTTATTGACACAGGAGCAGGTGTTATTGATGCAGACTATCGTGGAG
AGGTTGGTGTGGTTCTGTTCAACTTTAGTGACGACGAATTCAAGGTTCAG
GTGGGCGATCGAGTTGCTCAGCTGGTTATTGAGAAAATCTGCATGGGAGC
TGTTGACGAGGTCAAGGAGCTTGATGAAACTACACGGGGTGATGGTGGTT
TCGGGTCGACAGGTGTGGAGACCAAGGCCTGA
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