Gchil10034.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10034.t1
Unique NameGchil10034.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:500483..502292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706320.1
Preferred nameCCT7
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K09499
GOsGO:0000003,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006457,GO:0006458,GO:0006810,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0042221,GO:0042802,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0046931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue1.14e-264
EggNOG OGsCOG0459@1|root,KOG0361@2759|Eukaryota
Descriptionprotein binding involved in protein folding
COG categoryO
BRITEko00000,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10034Gchil10034Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 500483..502292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10034.t1Gchil10034.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 500483..502292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10034.t1.stop1Gchil10034.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 500483..500485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10034.t1.CDS1Gchil10034.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 500483..502122 -
Gchil10034.t1.CDS2Gchil10034.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 502217..502292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10034.t1.exon1Gchil10034.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 500483..502122 -
Gchil10034.t1.exon2Gchil10034.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 502217..502292 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10034.t1.intron1Gchil10034.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 502123..502216 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10034.t1.start1Gchil10034.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 502290..502292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10034.t1 ID=Gchil10034.t1|Name=Gchil10034.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=572bp
MSQFLAPQIVFLKEGTDTSQGLGQLVSNINACLAVVDILRTTLGPRGMDK
LINEGKGKVTISNDGATILKLLDITHPAARTLVDIAKSQDAEVGDGTTSV
TLLAGEMLKNCKDYVQDGLHPRTIIRAYRKAATLAVERVRELAIDIHGKN
AKETRLLLQRCAATSLNSKLIAHHKEFFSSIVTDAVLSLDEDLDLSMIGV
KKVQGGSATDSMLVKGVAFKKTFSYAGFEQQPKKFLNPKVITLNIELELK
AEKENAEVRVDSTKEYQAIVDAEWDIIYEKLDKIVKTGAKVVLSRLAIGD
LATQYFADRDIFCAGRVAEADLNRVTRAVGGVVQTTMNSVAESDYDAILG
TCELFEEVQIGNERYNMFTGCPKRKTATIIVRGGSEQFMAETERSLHDSI
MIARRTIKHSTAVAGGGAIEMELSRYLRDYSLKVHGKEQLLILAFAKGLE
VIPRTLSDNAGFDSTDILNKLRAKHATGEDGKWYGVDIEESGICNTWESF
VWEPALVKINAISAATEAACMILSVDETVQNPQSESSQAPPAGGRAPVGG
MGGMMAGAGRGVRKFKGRGGR*
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spliced messenger RNA

>Gchil10034.t1 ID=Gchil10034.t1|Name=Gchil10034.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00004442_pilon:500483..502292- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGTTTCTTGCACCCCAGATCGTGTTTTTGAAGGAAGGAACTGA
TACTAGTCAGGGTTTGGGTCAACTTGTCTCAAATATCAATGCCTGTCTTG
CTGTCGTCGATATACTACGAACAACGTTGGGTCCCAGAGGTATGGATAAG
TTAATAAATGAAGGAAAAGGTAAAGTAACTATATCCAATGACGGTGCTAC
TATTCTCAAGCTGTTGGACATTACTCACCCAGCAGCACGCACACTGGTGG
ATATCGCAAAGTCTCAAGACGCCGAAGTGGGAGATGGCACAACATCTGTA
ACTCTTTTGGCTGGAGAAATGCTGAAAAACTGCAAGGACTATGTGCAAGA
TGGTCTTCATCCCCGAACTATTATCCGTGCGTACAGAAAGGCCGCCACGC
TCGCTGTAGAACGAGTGCGGGAACTTGCCATTGATATTCACGGAAAGAAT
GCGAAGGAAACCAGATTGTTGTTGCAACGATGTGCAGCAACTTCGTTAAA
TTCAAAGCTCATTGCACATCACAAAGAATTTTTCTCCAGTATTGTTACTG
ATGCTGTGCTGTCACTTGACGAGGATCTTGACTTGTCGATGATTGGTGTC
AAGAAGGTTCAGGGCGGATCGGCTACTGATTCAATGCTTGTCAAGGGTGT
GGCGTTCAAAAAGACGTTTTCCTACGCAGGTTTCGAGCAACAGCCTAAGA
AATTTTTGAACCCTAAGGTTATAACGTTGAATATTGAACTAGAACTCAAG
GCTGAAAAGGAAAACGCAGAAGTAAGAGTCGATTCAACAAAAGAATACCA
GGCTATTGTGGACGCCGAATGGGATATAATCTATGAAAAACTTGACAAGA
TAGTCAAGACTGGCGCAAAGGTTGTACTATCTCGTTTGGCAATTGGGGAC
CTCGCTACTCAATATTTTGCGGATAGAGACATATTCTGTGCCGGAAGAGT
TGCTGAAGCTGATTTGAATCGCGTGACACGGGCTGTTGGCGGGGTCGTGC
AGACCACAATGAACAGCGTAGCTGAGTCAGACTATGATGCAATTTTGGGC
ACATGCGAGCTTTTCGAGGAGGTACAGATTGGTAACGAGCGATACAACAT
GTTCACCGGTTGTCCGAAAAGAAAGACAGCAACCATTATTGTCAGGGGCG
GATCAGAACAATTCATGGCAGAAACAGAACGATCTCTTCACGACTCAATT
ATGATCGCCCGTAGGACTATAAAGCATTCAACTGCTGTCGCGGGGGGAGG
GGCAATTGAAATGGAACTGAGTCGATACCTTCGAGATTACTCCTTGAAGG
TACATGGTAAGGAGCAGCTCCTGATTCTTGCTTTTGCCAAAGGGCTAGAA
GTAATTCCGAGAACCCTCAGCGACAATGCCGGGTTTGATTCAACTGATAT
TCTCAACAAGCTAAGAGCTAAGCATGCCACAGGAGAGGATGGCAAGTGGT
ATGGTGTCGACATCGAAGAATCAGGAATATGCAACACGTGGGAATCCTTT
GTGTGGGAACCGGCGCTTGTCAAAATTAATGCCATCAGCGCTGCAACTGA
AGCTGCATGTATGATTCTTTCAGTGGATGAAACGGTCCAAAATCCACAAA
GCGAATCCTCTCAAGCGCCTCCAGCTGGAGGTAGGGCTCCTGTTGGAGGG
ATGGGCGGAATGATGGCTGGCGCCGGTCGGGGAGTTAGGAAATTCAAAGG
ACGTGGAGGACGCTGA
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protein sequence of Gchil10034.t1

>Gchil10034.t1 ID=Gchil10034.t1|Name=Gchil10034.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=572bp
MSQFLAPQIVFLKEGTDTSQGLGQLVSNINACLAVVDILRTTLGPRGMDK
LINEGKGKVTISNDGATILKLLDITHPAARTLVDIAKSQDAEVGDGTTSV
TLLAGEMLKNCKDYVQDGLHPRTIIRAYRKAATLAVERVRELAIDIHGKN
AKETRLLLQRCAATSLNSKLIAHHKEFFSSIVTDAVLSLDEDLDLSMIGV
KKVQGGSATDSMLVKGVAFKKTFSYAGFEQQPKKFLNPKVITLNIELELK
AEKENAEVRVDSTKEYQAIVDAEWDIIYEKLDKIVKTGAKVVLSRLAIGD
LATQYFADRDIFCAGRVAEADLNRVTRAVGGVVQTTMNSVAESDYDAILG
TCELFEEVQIGNERYNMFTGCPKRKTATIIVRGGSEQFMAETERSLHDSI
MIARRTIKHSTAVAGGGAIEMELSRYLRDYSLKVHGKEQLLILAFAKGLE
VIPRTLSDNAGFDSTDILNKLRAKHATGEDGKWYGVDIEESGICNTWESF
VWEPALVKINAISAATEAACMILSVDETVQNPQSESSQAPPAGGRAPVGG
MGGMMAGAGRGVRKFKGRGGR*
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mRNA from alignment at tig00004442_pilon:500483..502292-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10034.t1 ID=Gchil10034.t1|Name=Gchil10034.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1810bp|location=Sequence derived from alignment at tig00004442_pilon:500483..502292- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGTTTCTTGCACCCCAGATCGTGTTTTTGAAGGAAGGAACTGA
TACTAGTCAGGGTTTGGGTCAACTTGGTACGTTATATATGATAGTCAGCG
TATATCAAGGTCGTTTGCAAACATCGAGTCGAGATGAAGTTATTGAAATG
CTAACATCATCCAACTTCAGTCTCAAATATCAATGCCTGTCTTGCTGTCG
TCGATATACTACGAACAACGTTGGGTCCCAGAGGTATGGATAAGTTAATA
AATGAAGGAAAAGGTAAAGTAACTATATCCAATGACGGTGCTACTATTCT
CAAGCTGTTGGACATTACTCACCCAGCAGCACGCACACTGGTGGATATCG
CAAAGTCTCAAGACGCCGAAGTGGGAGATGGCACAACATCTGTAACTCTT
TTGGCTGGAGAAATGCTGAAAAACTGCAAGGACTATGTGCAAGATGGTCT
TCATCCCCGAACTATTATCCGTGCGTACAGAAAGGCCGCCACGCTCGCTG
TAGAACGAGTGCGGGAACTTGCCATTGATATTCACGGAAAGAATGCGAAG
GAAACCAGATTGTTGTTGCAACGATGTGCAGCAACTTCGTTAAATTCAAA
GCTCATTGCACATCACAAAGAATTTTTCTCCAGTATTGTTACTGATGCTG
TGCTGTCACTTGACGAGGATCTTGACTTGTCGATGATTGGTGTCAAGAAG
GTTCAGGGCGGATCGGCTACTGATTCAATGCTTGTCAAGGGTGTGGCGTT
CAAAAAGACGTTTTCCTACGCAGGTTTCGAGCAACAGCCTAAGAAATTTT
TGAACCCTAAGGTTATAACGTTGAATATTGAACTAGAACTCAAGGCTGAA
AAGGAAAACGCAGAAGTAAGAGTCGATTCAACAAAAGAATACCAGGCTAT
TGTGGACGCCGAATGGGATATAATCTATGAAAAACTTGACAAGATAGTCA
AGACTGGCGCAAAGGTTGTACTATCTCGTTTGGCAATTGGGGACCTCGCT
ACTCAATATTTTGCGGATAGAGACATATTCTGTGCCGGAAGAGTTGCTGA
AGCTGATTTGAATCGCGTGACACGGGCTGTTGGCGGGGTCGTGCAGACCA
CAATGAACAGCGTAGCTGAGTCAGACTATGATGCAATTTTGGGCACATGC
GAGCTTTTCGAGGAGGTACAGATTGGTAACGAGCGATACAACATGTTCAC
CGGTTGTCCGAAAAGAAAGACAGCAACCATTATTGTCAGGGGCGGATCAG
AACAATTCATGGCAGAAACAGAACGATCTCTTCACGACTCAATTATGATC
GCCCGTAGGACTATAAAGCATTCAACTGCTGTCGCGGGGGGAGGGGCAAT
TGAAATGGAACTGAGTCGATACCTTCGAGATTACTCCTTGAAGGTACATG
GTAAGGAGCAGCTCCTGATTCTTGCTTTTGCCAAAGGGCTAGAAGTAATT
CCGAGAACCCTCAGCGACAATGCCGGGTTTGATTCAACTGATATTCTCAA
CAAGCTAAGAGCTAAGCATGCCACAGGAGAGGATGGCAAGTGGTATGGTG
TCGACATCGAAGAATCAGGAATATGCAACACGTGGGAATCCTTTGTGTGG
GAACCGGCGCTTGTCAAAATTAATGCCATCAGCGCTGCAACTGAAGCTGC
ATGTATGATTCTTTCAGTGGATGAAACGGTCCAAAATCCACAAAGCGAAT
CCTCTCAAGCGCCTCCAGCTGGAGGTAGGGCTCCTGTTGGAGGGATGGGC
GGAATGATGGCTGGCGCCGGTCGGGGAGTTAGGAAATTCAAAGGACGTGG
AGGACGCTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:500483..502292-

>Gchil10034.t1 ID=Gchil10034.t1|Name=Gchil10034.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00004442_pilon:500483..502292- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGTTTCTTGCACCCCAGATCGTGTTTTTGAAGGAAGGAACTGA
TACTAGTCAGGGTTTGGGTCAACTTGTCTCAAATATCAATGCCTGTCTTG
CTGTCGTCGATATACTACGAACAACGTTGGGTCCCAGAGGTATGGATAAG
TTAATAAATGAAGGAAAAGGTAAAGTAACTATATCCAATGACGGTGCTAC
TATTCTCAAGCTGTTGGACATTACTCACCCAGCAGCACGCACACTGGTGG
ATATCGCAAAGTCTCAAGACGCCGAAGTGGGAGATGGCACAACATCTGTA
ACTCTTTTGGCTGGAGAAATGCTGAAAAACTGCAAGGACTATGTGCAAGA
TGGTCTTCATCCCCGAACTATTATCCGTGCGTACAGAAAGGCCGCCACGC
TCGCTGTAGAACGAGTGCGGGAACTTGCCATTGATATTCACGGAAAGAAT
GCGAAGGAAACCAGATTGTTGTTGCAACGATGTGCAGCAACTTCGTTAAA
TTCAAAGCTCATTGCACATCACAAAGAATTTTTCTCCAGTATTGTTACTG
ATGCTGTGCTGTCACTTGACGAGGATCTTGACTTGTCGATGATTGGTGTC
AAGAAGGTTCAGGGCGGATCGGCTACTGATTCAATGCTTGTCAAGGGTGT
GGCGTTCAAAAAGACGTTTTCCTACGCAGGTTTCGAGCAACAGCCTAAGA
AATTTTTGAACCCTAAGGTTATAACGTTGAATATTGAACTAGAACTCAAG
GCTGAAAAGGAAAACGCAGAAGTAAGAGTCGATTCAACAAAAGAATACCA
GGCTATTGTGGACGCCGAATGGGATATAATCTATGAAAAACTTGACAAGA
TAGTCAAGACTGGCGCAAAGGTTGTACTATCTCGTTTGGCAATTGGGGAC
CTCGCTACTCAATATTTTGCGGATAGAGACATATTCTGTGCCGGAAGAGT
TGCTGAAGCTGATTTGAATCGCGTGACACGGGCTGTTGGCGGGGTCGTGC
AGACCACAATGAACAGCGTAGCTGAGTCAGACTATGATGCAATTTTGGGC
ACATGCGAGCTTTTCGAGGAGGTACAGATTGGTAACGAGCGATACAACAT
GTTCACCGGTTGTCCGAAAAGAAAGACAGCAACCATTATTGTCAGGGGCG
GATCAGAACAATTCATGGCAGAAACAGAACGATCTCTTCACGACTCAATT
ATGATCGCCCGTAGGACTATAAAGCATTCAACTGCTGTCGCGGGGGGAGG
GGCAATTGAAATGGAACTGAGTCGATACCTTCGAGATTACTCCTTGAAGG
TACATGGTAAGGAGCAGCTCCTGATTCTTGCTTTTGCCAAAGGGCTAGAA
GTAATTCCGAGAACCCTCAGCGACAATGCCGGGTTTGATTCAACTGATAT
TCTCAACAAGCTAAGAGCTAAGCATGCCACAGGAGAGGATGGCAAGTGGT
ATGGTGTCGACATCGAAGAATCAGGAATATGCAACACGTGGGAATCCTTT
GTGTGGGAACCGGCGCTTGTCAAAATTAATGCCATCAGCGCTGCAACTGA
AGCTGCATGTATGATTCTTTCAGTGGATGAAACGGTCCAAAATCCACAAA
GCGAATCCTCTCAAGCGCCTCCAGCTGGAGGTAGGGCTCCTGTTGGAGGG
ATGGGCGGAATGATGGCTGGCGCCGGTCGGGGAGTTAGGAAATTCAAAGG
ACGTGGAGGACGCTGA
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