Gchil10030.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10030.t1
Unique Name	Gchil10030.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:466132..467970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704280.1
Preferred name	ABCE1
PFAMs	ABC_tran,Fer4,RLI
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06174
GOs	GO:0000054,GO:0000166,GO:0000956,GO:0001558,GO:0001959,GO:0002181,GO:0002183,GO:0002682,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005506,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008428,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010941,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0022613,GO:0023051,GO:0030234,GO:0030554,GO:0030684,GO:0030687,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031369,GO:0031503,GO:0031974,GO:0032069,GO:0032074,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033036,GO:0033750,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0036094,GO:0040008,GO:0042254,GO:0042273,GO:0042886,GO:0042981,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045088,GO:0045184,GO:0045727,GO:0045934,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050657,GO:0050658,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051536,GO:0051540,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060338,GO:0060548,GO:0060698,GO:0060699,GO:0060700,GO:0060701,GO:0060702,GO:0060759,GO:0065007,GO:0065009,GO:0070013,GO:0070481,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901214,GO:1901215,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903008,GO:1990904,GO:2000112
Evalue	0.0
EggNOG OGs	COG1245@1\|root,KOG0063@2759\|Eukaryota
Description	ribosomal small subunit binding
COG category	C
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10030	Gchil10030	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 466132..467970 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10030.t1.start1	Gchil10030.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 466132..466134 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10030.t1.CDS1	Gchil10030.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 466132..467970 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10030.t1.exon1	Gchil10030.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 466132..467970 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10030.t1.stop1	Gchil10030.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 467968..467970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10030.t1	Gchil10030.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 466132..467970 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:466132..467970+
coding sequence from alignment at tig00004442_pilon:466132..467970+

mRNA sequence

>Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=613bp
MAEKLTRIAIVNGERCKPKRCSLECKKSCPVVRMGKIGCIEVTSKSKIAL
ISEILCVGCGICVKKCPFDAIQIINLPKELEKETVHRFGPNSFKLHRLPV
PRPGQVLGLVGTNGIGKSTALRVLSGKLKPNLGAWNAPPDWTDILSHFRG
SELQNYFTKVLEDDIKAVFKPQYVDAIAKAVKGRVADMLKRKDERNVMDH
IARELQLVDLLDREINVLSGGELQRFALAMVAVQQAEVYMIDEPSSYLDV
RQRLRAAKLIRDLLVDKSKTYVIVVEHDLAVLDYLSDFVCCLYGKPGAYG
VVTLPFSVREGINIFLAGFVPTENLRFRDTALQFRLAETADDEEEVEHHH
LYSYPNMSKTLGSFKLHIETGSFTDSEIVVMLGENGTGKTTFIRMLAGRL
EPDGKAVEVPEMNVSYKPQKISPKFDGTVRQLLYAKIRDAWLHPQFMTDV
TKPMNMDPLLDQYVRHLSGGELQRVALVIALGKPADVYLIDEPSAYLDSE
QRIIAAKMIKRFILHAKKTAFVVEHDFIMSSYLADRVIVYEGSPAKECTA
CAPQTLVSGMNRFLKNLEITFRRDPSNFRPRINKLDSVKDREQKLVGQYF
YVDVAADERDED*

spliced messenger RNA

>Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00004442_pilon:466132..467970+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGAAACTCACGCGTATTGCCATCGTCAACGGCGAGCGATGCAA
GCCGAAGAGATGCTCATTGGAGTGTAAGAAGAGCTGTCCCGTTGTACGCA
TGGGTAAGATAGGATGTATTGAAGTCACATCCAAGAGTAAAATTGCATTG
ATATCAGAAATACTCTGTGTTGGTTGTGGTATCTGCGTCAAAAAGTGCCC
CTTTGATGCTATCCAGATCATCAACCTGCCCAAAGAACTTGAAAAGGAAA
CGGTTCACCGCTTTGGACCGAACTCATTTAAGCTACATCGTCTACCTGTT
CCCAGGCCTGGTCAGGTTCTAGGATTAGTCGGAACCAATGGCATTGGAAA
GAGCACAGCTCTTCGGGTACTCTCTGGAAAACTGAAGCCCAACCTTGGTG
CTTGGAATGCACCACCAGATTGGACAGATATTCTCAGTCACTTCCGCGGC
AGTGAACTGCAGAATTACTTCACCAAAGTACTCGAAGATGATATTAAGGC
AGTCTTCAAACCACAGTACGTCGATGCAATTGCCAAAGCTGTAAAAGGCC
GCGTCGCAGACATGCTCAAGAGAAAAGATGAACGTAATGTTATGGATCAT
ATTGCTCGTGAGTTACAGCTTGTTGATTTGCTTGATCGCGAGATCAATGT
TCTCAGCGGTGGAGAGTTACAGCGATTTGCTTTAGCTATGGTGGCTGTGC
AACAAGCCGAAGTGTACATGATTGATGAACCCAGTTCGTATCTTGATGTA
CGCCAACGACTCAGAGCTGCAAAACTTATCCGCGATCTATTGGTTGATAA
GAGCAAGACATATGTTATCGTCGTAGAACACGATCTCGCTGTTCTTGATT
ACCTTTCTGACTTCGTATGTTGCCTTTACGGAAAACCAGGTGCATATGGC
GTCGTCACGCTTCCATTCTCTGTCAGAGAGGGCATCAATATTTTTCTGGC
TGGGTTTGTGCCGACAGAGAACCTGCGATTCAGAGATACAGCTCTACAAT
TCCGACTTGCTGAAACTGCTGACGATGAAGAAGAAGTTGAACATCATCAC
TTGTATAGTTACCCAAACATGAGCAAAACATTAGGTTCCTTTAAGCTGCA
TATTGAAACTGGATCATTTACTGACTCAGAAATCGTTGTCATGCTTGGTG
AAAACGGAACGGGTAAGACAACATTCATTCGAATGCTCGCTGGTCGTCTC
GAGCCTGACGGAAAAGCGGTGGAAGTTCCCGAAATGAACGTAAGCTACAA
ACCTCAGAAGATATCGCCTAAGTTTGATGGCACGGTGCGGCAGCTTTTGT
ATGCCAAGATCCGTGACGCTTGGCTACATCCGCAGTTCATGACCGACGTG
ACAAAACCGATGAACATGGATCCACTTCTAGATCAATATGTCAGACATTT
GTCCGGGGGAGAACTTCAACGAGTGGCTCTCGTAATTGCTCTTGGAAAAC
CAGCCGATGTATATCTCATAGATGAACCTAGTGCCTATCTTGATTCTGAG
CAAAGAATCATAGCGGCGAAGATGATTAAGAGATTCATCTTGCACGCAAA
GAAGACGGCCTTTGTCGTAGAACATGATTTTATCATGAGTTCTTACCTCG
CTGACCGCGTCATTGTGTACGAAGGATCCCCAGCAAAGGAATGCACTGCT
TGCGCGCCACAAACGTTGGTCTCGGGAATGAATAGGTTCCTCAAGAACCT
GGAAATCACGTTTAGACGGGATCCTAGCAATTTCCGACCGAGAATTAATA
AACTCGATTCCGTGAAGGACAGGGAACAGAAGTTGGTTGGACAATATTTC
TACGTAGATGTTGCGGCAGATGAACGTGACGAAGACTGA

protein sequence of Gchil10030.t1

>Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=613bp
MAEKLTRIAIVNGERCKPKRCSLECKKSCPVVRMGKIGCIEVTSKSKIAL
ISEILCVGCGICVKKCPFDAIQIINLPKELEKETVHRFGPNSFKLHRLPV
PRPGQVLGLVGTNGIGKSTALRVLSGKLKPNLGAWNAPPDWTDILSHFRG
SELQNYFTKVLEDDIKAVFKPQYVDAIAKAVKGRVADMLKRKDERNVMDH
IARELQLVDLLDREINVLSGGELQRFALAMVAVQQAEVYMIDEPSSYLDV
RQRLRAAKLIRDLLVDKSKTYVIVVEHDLAVLDYLSDFVCCLYGKPGAYG
VVTLPFSVREGINIFLAGFVPTENLRFRDTALQFRLAETADDEEEVEHHH
LYSYPNMSKTLGSFKLHIETGSFTDSEIVVMLGENGTGKTTFIRMLAGRL
EPDGKAVEVPEMNVSYKPQKISPKFDGTVRQLLYAKIRDAWLHPQFMTDV
TKPMNMDPLLDQYVRHLSGGELQRVALVIALGKPADVYLIDEPSAYLDSE
QRIIAAKMIKRFILHAKKTAFVVEHDFIMSSYLADRVIVYEGSPAKECTA
CAPQTLVSGMNRFLKNLEITFRRDPSNFRPRINKLDSVKDREQKLVGQYF
YVDVAADERDED*

mRNA from alignment at tig00004442_pilon:466132..467970+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00004442_pilon:466132..467970+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGAGAAACTCACGCGTATTGCCATCGTCAACGGCGAGCGATGCAA
GCCGAAGAGATGCTCATTGGAGTGTAAGAAGAGCTGTCCCGTTGTACGCA
TGGGTAAGATAGGATGTATTGAAGTCACATCCAAGAGTAAAATTGCATTG
ATATCAGAAATACTCTGTGTTGGTTGTGGTATCTGCGTCAAAAAGTGCCC
CTTTGATGCTATCCAGATCATCAACCTGCCCAAAGAACTTGAAAAGGAAA
CGGTTCACCGCTTTGGACCGAACTCATTTAAGCTACATCGTCTACCTGTT
CCCAGGCCTGGTCAGGTTCTAGGATTAGTCGGAACCAATGGCATTGGAAA
GAGCACAGCTCTTCGGGTACTCTCTGGAAAACTGAAGCCCAACCTTGGTG
CTTGGAATGCACCACCAGATTGGACAGATATTCTCAGTCACTTCCGCGGC
AGTGAACTGCAGAATTACTTCACCAAAGTACTCGAAGATGATATTAAGGC
AGTCTTCAAACCACAGTACGTCGATGCAATTGCCAAAGCTGTAAAAGGCC
GCGTCGCAGACATGCTCAAGAGAAAAGATGAACGTAATGTTATGGATCAT
ATTGCTCGTGAGTTACAGCTTGTTGATTTGCTTGATCGCGAGATCAATGT
TCTCAGCGGTGGAGAGTTACAGCGATTTGCTTTAGCTATGGTGGCTGTGC
AACAAGCCGAAGTGTACATGATTGATGAACCCAGTTCGTATCTTGATGTA
CGCCAACGACTCAGAGCTGCAAAACTTATCCGCGATCTATTGGTTGATAA
GAGCAAGACATATGTTATCGTCGTAGAACACGATCTCGCTGTTCTTGATT
ACCTTTCTGACTTCGTATGTTGCCTTTACGGAAAACCAGGTGCATATGGC
GTCGTCACGCTTCCATTCTCTGTCAGAGAGGGCATCAATATTTTTCTGGC
TGGGTTTGTGCCGACAGAGAACCTGCGATTCAGAGATACAGCTCTACAAT
TCCGACTTGCTGAAACTGCTGACGATGAAGAAGAAGTTGAACATCATCAC
TTGTATAGTTACCCAAACATGAGCAAAACATTAGGTTCCTTTAAGCTGCA
TATTGAAACTGGATCATTTACTGACTCAGAAATCGTTGTCATGCTTGGTG
AAAACGGAACGGGTAAGACAACATTCATTCGAATGCTCGCTGGTCGTCTC
GAGCCTGACGGAAAAGCGGTGGAAGTTCCCGAAATGAACGTAAGCTACAA
ACCTCAGAAGATATCGCCTAAGTTTGATGGCACGGTGCGGCAGCTTTTGT
ATGCCAAGATCCGTGACGCTTGGCTACATCCGCAGTTCATGACCGACGTG
ACAAAACCGATGAACATGGATCCACTTCTAGATCAATATGTCAGACATTT
GTCCGGGGGAGAACTTCAACGAGTGGCTCTCGTAATTGCTCTTGGAAAAC
CAGCCGATGTATATCTCATAGATGAACCTAGTGCCTATCTTGATTCTGAG
CAAAGAATCATAGCGGCGAAGATGATTAAGAGATTCATCTTGCACGCAAA
GAAGACGGCCTTTGTCGTAGAACATGATTTTATCATGAGTTCTTACCTCG
CTGACCGCGTCATTGTGTACGAAGGATCCCCAGCAAAGGAATGCACTGCT
TGCGCGCCACAAACGTTGGTCTCGGGAATGAATAGGTTCCTCAAGAACCT
GGAAATCACGTTTAGACGGGATCCTAGCAATTTCCGACCGAGAATTAATA
AACTCGATTCCGTGAAGGACAGGGAACAGAAGTTGGTTGGACAATATTTC
TACGTAGATGTTGCGGCAGATGAACGTGACGAAGACTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:466132..467970+

>Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00004442_pilon:466132..467970+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGAGAAACTCACGCGTATTGCCATCGTCAACGGCGAGCGATGCAA
GCCGAAGAGATGCTCATTGGAGTGTAAGAAGAGCTGTCCCGTTGTACGCA
TGGGTAAGATAGGATGTATTGAAGTCACATCCAAGAGTAAAATTGCATTG
ATATCAGAAATACTCTGTGTTGGTTGTGGTATCTGCGTCAAAAAGTGCCC
CTTTGATGCTATCCAGATCATCAACCTGCCCAAAGAACTTGAAAAGGAAA
CGGTTCACCGCTTTGGACCGAACTCATTTAAGCTACATCGTCTACCTGTT
CCCAGGCCTGGTCAGGTTCTAGGATTAGTCGGAACCAATGGCATTGGAAA
GAGCACAGCTCTTCGGGTACTCTCTGGAAAACTGAAGCCCAACCTTGGTG
CTTGGAATGCACCACCAGATTGGACAGATATTCTCAGTCACTTCCGCGGC
AGTGAACTGCAGAATTACTTCACCAAAGTACTCGAAGATGATATTAAGGC
AGTCTTCAAACCACAGTACGTCGATGCAATTGCCAAAGCTGTAAAAGGCC
GCGTCGCAGACATGCTCAAGAGAAAAGATGAACGTAATGTTATGGATCAT
ATTGCTCGTGAGTTACAGCTTGTTGATTTGCTTGATCGCGAGATCAATGT
TCTCAGCGGTGGAGAGTTACAGCGATTTGCTTTAGCTATGGTGGCTGTGC
AACAAGCCGAAGTGTACATGATTGATGAACCCAGTTCGTATCTTGATGTA
CGCCAACGACTCAGAGCTGCAAAACTTATCCGCGATCTATTGGTTGATAA
GAGCAAGACATATGTTATCGTCGTAGAACACGATCTCGCTGTTCTTGATT
ACCTTTCTGACTTCGTATGTTGCCTTTACGGAAAACCAGGTGCATATGGC
GTCGTCACGCTTCCATTCTCTGTCAGAGAGGGCATCAATATTTTTCTGGC
TGGGTTTGTGCCGACAGAGAACCTGCGATTCAGAGATACAGCTCTACAAT
TCCGACTTGCTGAAACTGCTGACGATGAAGAAGAAGTTGAACATCATCAC
TTGTATAGTTACCCAAACATGAGCAAAACATTAGGTTCCTTTAAGCTGCA
TATTGAAACTGGATCATTTACTGACTCAGAAATCGTTGTCATGCTTGGTG
AAAACGGAACGGGTAAGACAACATTCATTCGAATGCTCGCTGGTCGTCTC
GAGCCTGACGGAAAAGCGGTGGAAGTTCCCGAAATGAACGTAAGCTACAA
ACCTCAGAAGATATCGCCTAAGTTTGATGGCACGGTGCGGCAGCTTTTGT
ATGCCAAGATCCGTGACGCTTGGCTACATCCGCAGTTCATGACCGACGTG
ACAAAACCGATGAACATGGATCCACTTCTAGATCAATATGTCAGACATTT
GTCCGGGGGAGAACTTCAACGAGTGGCTCTCGTAATTGCTCTTGGAAAAC
CAGCCGATGTATATCTCATAGATGAACCTAGTGCCTATCTTGATTCTGAG
CAAAGAATCATAGCGGCGAAGATGATTAAGAGATTCATCTTGCACGCAAA
GAAGACGGCCTTTGTCGTAGAACATGATTTTATCATGAGTTCTTACCTCG
CTGACCGCGTCATTGTGTACGAAGGATCCCCAGCAAAGGAATGCACTGCT
TGCGCGCCACAAACGTTGGTCTCGGGAATGAATAGGTTCCTCAAGAACCT
GGAAATCACGTTTAGACGGGATCCTAGCAATTTCCGACCGAGAATTAATA
AACTCGATTCCGTGAAGGACAGGGAACAGAAGTTGGTTGGACAATATTTC
TACGTAGATGTTGCGGCAGATGAACGTGACGAAGACTGA