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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005704280.1 |
Preferred name | ABCE1 |
PFAMs | ABC_tran,Fer4,RLI |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K06174 |
GOs | GO:0000054,GO:0000166,GO:0000956,GO:0001558,GO:0001959,GO:0002181,GO:0002183,GO:0002682,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005506,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008428,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010941,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0022613,GO:0023051,GO:0030234,GO:0030554,GO:0030684,GO:0030687,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031369,GO:0031503,GO:0031974,GO:0032069,GO:0032074,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033036,GO:0033750,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0036094,GO:0040008,GO:0042254,GO:0042273,GO:0042886,GO:0042981,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045088,GO:0045184,GO:0045727,GO:0045934,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050657,GO:0050658,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051536,GO:0051540,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060338,GO:0060548,GO:0060698,GO:0060699,GO:0060700,GO:0060701,GO:0060702,GO:0060759,GO:0065007,GO:0065009,GO:0070013,GO:0070481,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901214,GO:1901215,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903008,GO:1990904,GO:2000112 |
Evalue | 0.0 |
EggNOG OGs | COG1245@1|root,KOG0063@2759|Eukaryota |
Description | ribosomal small subunit binding |
COG category | C |
BRITE | ko00000,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=613bp MAEKLTRIAIVNGERCKPKRCSLECKKSCPVVRMGKIGCIEVTSKSKIAL ISEILCVGCGICVKKCPFDAIQIINLPKELEKETVHRFGPNSFKLHRLPV PRPGQVLGLVGTNGIGKSTALRVLSGKLKPNLGAWNAPPDWTDILSHFRG SELQNYFTKVLEDDIKAVFKPQYVDAIAKAVKGRVADMLKRKDERNVMDH IARELQLVDLLDREINVLSGGELQRFALAMVAVQQAEVYMIDEPSSYLDV RQRLRAAKLIRDLLVDKSKTYVIVVEHDLAVLDYLSDFVCCLYGKPGAYG VVTLPFSVREGINIFLAGFVPTENLRFRDTALQFRLAETADDEEEVEHHH LYSYPNMSKTLGSFKLHIETGSFTDSEIVVMLGENGTGKTTFIRMLAGRL EPDGKAVEVPEMNVSYKPQKISPKFDGTVRQLLYAKIRDAWLHPQFMTDV TKPMNMDPLLDQYVRHLSGGELQRVALVIALGKPADVYLIDEPSAYLDSE QRIIAAKMIKRFILHAKKTAFVVEHDFIMSSYLADRVIVYEGSPAKECTA CAPQTLVSGMNRFLKNLEITFRRDPSNFRPRINKLDSVKDREQKLVGQYF YVDVAADERDED* back to topspliced messenger RNA >Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00004442_pilon:466132..467970+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGAGAAACTCACGCGTATTGCCATCGTCAACGGCGAGCGATGCAA GCCGAAGAGATGCTCATTGGAGTGTAAGAAGAGCTGTCCCGTTGTACGCA TGGGTAAGATAGGATGTATTGAAGTCACATCCAAGAGTAAAATTGCATTG ATATCAGAAATACTCTGTGTTGGTTGTGGTATCTGCGTCAAAAAGTGCCC CTTTGATGCTATCCAGATCATCAACCTGCCCAAAGAACTTGAAAAGGAAA CGGTTCACCGCTTTGGACCGAACTCATTTAAGCTACATCGTCTACCTGTT CCCAGGCCTGGTCAGGTTCTAGGATTAGTCGGAACCAATGGCATTGGAAA GAGCACAGCTCTTCGGGTACTCTCTGGAAAACTGAAGCCCAACCTTGGTG CTTGGAATGCACCACCAGATTGGACAGATATTCTCAGTCACTTCCGCGGC AGTGAACTGCAGAATTACTTCACCAAAGTACTCGAAGATGATATTAAGGC AGTCTTCAAACCACAGTACGTCGATGCAATTGCCAAAGCTGTAAAAGGCC GCGTCGCAGACATGCTCAAGAGAAAAGATGAACGTAATGTTATGGATCAT ATTGCTCGTGAGTTACAGCTTGTTGATTTGCTTGATCGCGAGATCAATGT TCTCAGCGGTGGAGAGTTACAGCGATTTGCTTTAGCTATGGTGGCTGTGC AACAAGCCGAAGTGTACATGATTGATGAACCCAGTTCGTATCTTGATGTA CGCCAACGACTCAGAGCTGCAAAACTTATCCGCGATCTATTGGTTGATAA GAGCAAGACATATGTTATCGTCGTAGAACACGATCTCGCTGTTCTTGATT ACCTTTCTGACTTCGTATGTTGCCTTTACGGAAAACCAGGTGCATATGGC GTCGTCACGCTTCCATTCTCTGTCAGAGAGGGCATCAATATTTTTCTGGC TGGGTTTGTGCCGACAGAGAACCTGCGATTCAGAGATACAGCTCTACAAT TCCGACTTGCTGAAACTGCTGACGATGAAGAAGAAGTTGAACATCATCAC TTGTATAGTTACCCAAACATGAGCAAAACATTAGGTTCCTTTAAGCTGCA TATTGAAACTGGATCATTTACTGACTCAGAAATCGTTGTCATGCTTGGTG AAAACGGAACGGGTAAGACAACATTCATTCGAATGCTCGCTGGTCGTCTC GAGCCTGACGGAAAAGCGGTGGAAGTTCCCGAAATGAACGTAAGCTACAA ACCTCAGAAGATATCGCCTAAGTTTGATGGCACGGTGCGGCAGCTTTTGT ATGCCAAGATCCGTGACGCTTGGCTACATCCGCAGTTCATGACCGACGTG ACAAAACCGATGAACATGGATCCACTTCTAGATCAATATGTCAGACATTT GTCCGGGGGAGAACTTCAACGAGTGGCTCTCGTAATTGCTCTTGGAAAAC CAGCCGATGTATATCTCATAGATGAACCTAGTGCCTATCTTGATTCTGAG CAAAGAATCATAGCGGCGAAGATGATTAAGAGATTCATCTTGCACGCAAA GAAGACGGCCTTTGTCGTAGAACATGATTTTATCATGAGTTCTTACCTCG CTGACCGCGTCATTGTGTACGAAGGATCCCCAGCAAAGGAATGCACTGCT TGCGCGCCACAAACGTTGGTCTCGGGAATGAATAGGTTCCTCAAGAACCT GGAAATCACGTTTAGACGGGATCCTAGCAATTTCCGACCGAGAATTAATA AACTCGATTCCGTGAAGGACAGGGAACAGAAGTTGGTTGGACAATATTTC TACGTAGATGTTGCGGCAGATGAACGTGACGAAGACTGA back to topprotein sequence of Gchil10030.t1 >Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=613bp
MAEKLTRIAIVNGERCKPKRCSLECKKSCPVVRMGKIGCIEVTSKSKIAL ISEILCVGCGICVKKCPFDAIQIINLPKELEKETVHRFGPNSFKLHRLPV PRPGQVLGLVGTNGIGKSTALRVLSGKLKPNLGAWNAPPDWTDILSHFRG SELQNYFTKVLEDDIKAVFKPQYVDAIAKAVKGRVADMLKRKDERNVMDH IARELQLVDLLDREINVLSGGELQRFALAMVAVQQAEVYMIDEPSSYLDV RQRLRAAKLIRDLLVDKSKTYVIVVEHDLAVLDYLSDFVCCLYGKPGAYG VVTLPFSVREGINIFLAGFVPTENLRFRDTALQFRLAETADDEEEVEHHH LYSYPNMSKTLGSFKLHIETGSFTDSEIVVMLGENGTGKTTFIRMLAGRL EPDGKAVEVPEMNVSYKPQKISPKFDGTVRQLLYAKIRDAWLHPQFMTDV TKPMNMDPLLDQYVRHLSGGELQRVALVIALGKPADVYLIDEPSAYLDSE QRIIAAKMIKRFILHAKKTAFVVEHDFIMSSYLADRVIVYEGSPAKECTA CAPQTLVSGMNRFLKNLEITFRRDPSNFRPRINKLDSVKDREQKLVGQYF YVDVAADERDED* back to topmRNA from alignment at tig00004442_pilon:466132..467970+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00004442_pilon:466132..467970+ (Gracilaria chilensis NLEC103_M9 male) ATGGCTGAGAAACTCACGCGTATTGCCATCGTCAACGGCGAGCGATGCAA
GCCGAAGAGATGCTCATTGGAGTGTAAGAAGAGCTGTCCCGTTGTACGCA
TGGGTAAGATAGGATGTATTGAAGTCACATCCAAGAGTAAAATTGCATTG
ATATCAGAAATACTCTGTGTTGGTTGTGGTATCTGCGTCAAAAAGTGCCC
CTTTGATGCTATCCAGATCATCAACCTGCCCAAAGAACTTGAAAAGGAAA
CGGTTCACCGCTTTGGACCGAACTCATTTAAGCTACATCGTCTACCTGTT
CCCAGGCCTGGTCAGGTTCTAGGATTAGTCGGAACCAATGGCATTGGAAA
GAGCACAGCTCTTCGGGTACTCTCTGGAAAACTGAAGCCCAACCTTGGTG
CTTGGAATGCACCACCAGATTGGACAGATATTCTCAGTCACTTCCGCGGC
AGTGAACTGCAGAATTACTTCACCAAAGTACTCGAAGATGATATTAAGGC
AGTCTTCAAACCACAGTACGTCGATGCAATTGCCAAAGCTGTAAAAGGCC
GCGTCGCAGACATGCTCAAGAGAAAAGATGAACGTAATGTTATGGATCAT
ATTGCTCGTGAGTTACAGCTTGTTGATTTGCTTGATCGCGAGATCAATGT
TCTCAGCGGTGGAGAGTTACAGCGATTTGCTTTAGCTATGGTGGCTGTGC
AACAAGCCGAAGTGTACATGATTGATGAACCCAGTTCGTATCTTGATGTA
CGCCAACGACTCAGAGCTGCAAAACTTATCCGCGATCTATTGGTTGATAA
GAGCAAGACATATGTTATCGTCGTAGAACACGATCTCGCTGTTCTTGATT
ACCTTTCTGACTTCGTATGTTGCCTTTACGGAAAACCAGGTGCATATGGC
GTCGTCACGCTTCCATTCTCTGTCAGAGAGGGCATCAATATTTTTCTGGC
TGGGTTTGTGCCGACAGAGAACCTGCGATTCAGAGATACAGCTCTACAAT
TCCGACTTGCTGAAACTGCTGACGATGAAGAAGAAGTTGAACATCATCAC
TTGTATAGTTACCCAAACATGAGCAAAACATTAGGTTCCTTTAAGCTGCA
TATTGAAACTGGATCATTTACTGACTCAGAAATCGTTGTCATGCTTGGTG
AAAACGGAACGGGTAAGACAACATTCATTCGAATGCTCGCTGGTCGTCTC
GAGCCTGACGGAAAAGCGGTGGAAGTTCCCGAAATGAACGTAAGCTACAA
ACCTCAGAAGATATCGCCTAAGTTTGATGGCACGGTGCGGCAGCTTTTGT
ATGCCAAGATCCGTGACGCTTGGCTACATCCGCAGTTCATGACCGACGTG
ACAAAACCGATGAACATGGATCCACTTCTAGATCAATATGTCAGACATTT
GTCCGGGGGAGAACTTCAACGAGTGGCTCTCGTAATTGCTCTTGGAAAAC
CAGCCGATGTATATCTCATAGATGAACCTAGTGCCTATCTTGATTCTGAG
CAAAGAATCATAGCGGCGAAGATGATTAAGAGATTCATCTTGCACGCAAA
GAAGACGGCCTTTGTCGTAGAACATGATTTTATCATGAGTTCTTACCTCG
CTGACCGCGTCATTGTGTACGAAGGATCCCCAGCAAAGGAATGCACTGCT
TGCGCGCCACAAACGTTGGTCTCGGGAATGAATAGGTTCCTCAAGAACCT
GGAAATCACGTTTAGACGGGATCCTAGCAATTTCCGACCGAGAATTAATA
AACTCGATTCCGTGAAGGACAGGGAACAGAAGTTGGTTGGACAATATTTC
TACGTAGATGTTGCGGCAGATGAACGTGACGAAGACTGA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:466132..467970+ >Gchil10030.t1 ID=Gchil10030.t1|Name=Gchil10030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00004442_pilon:466132..467970+ (Gracilaria chilensis NLEC103_M9 male) ATGGCTGAGAAACTCACGCGTATTGCCATCGTCAACGGCGAGCGATGCAA GCCGAAGAGATGCTCATTGGAGTGTAAGAAGAGCTGTCCCGTTGTACGCA TGGGTAAGATAGGATGTATTGAAGTCACATCCAAGAGTAAAATTGCATTG ATATCAGAAATACTCTGTGTTGGTTGTGGTATCTGCGTCAAAAAGTGCCC CTTTGATGCTATCCAGATCATCAACCTGCCCAAAGAACTTGAAAAGGAAA CGGTTCACCGCTTTGGACCGAACTCATTTAAGCTACATCGTCTACCTGTT CCCAGGCCTGGTCAGGTTCTAGGATTAGTCGGAACCAATGGCATTGGAAA GAGCACAGCTCTTCGGGTACTCTCTGGAAAACTGAAGCCCAACCTTGGTG CTTGGAATGCACCACCAGATTGGACAGATATTCTCAGTCACTTCCGCGGC AGTGAACTGCAGAATTACTTCACCAAAGTACTCGAAGATGATATTAAGGC AGTCTTCAAACCACAGTACGTCGATGCAATTGCCAAAGCTGTAAAAGGCC GCGTCGCAGACATGCTCAAGAGAAAAGATGAACGTAATGTTATGGATCAT ATTGCTCGTGAGTTACAGCTTGTTGATTTGCTTGATCGCGAGATCAATGT TCTCAGCGGTGGAGAGTTACAGCGATTTGCTTTAGCTATGGTGGCTGTGC AACAAGCCGAAGTGTACATGATTGATGAACCCAGTTCGTATCTTGATGTA CGCCAACGACTCAGAGCTGCAAAACTTATCCGCGATCTATTGGTTGATAA GAGCAAGACATATGTTATCGTCGTAGAACACGATCTCGCTGTTCTTGATT ACCTTTCTGACTTCGTATGTTGCCTTTACGGAAAACCAGGTGCATATGGC GTCGTCACGCTTCCATTCTCTGTCAGAGAGGGCATCAATATTTTTCTGGC TGGGTTTGTGCCGACAGAGAACCTGCGATTCAGAGATACAGCTCTACAAT TCCGACTTGCTGAAACTGCTGACGATGAAGAAGAAGTTGAACATCATCAC TTGTATAGTTACCCAAACATGAGCAAAACATTAGGTTCCTTTAAGCTGCA TATTGAAACTGGATCATTTACTGACTCAGAAATCGTTGTCATGCTTGGTG AAAACGGAACGGGTAAGACAACATTCATTCGAATGCTCGCTGGTCGTCTC GAGCCTGACGGAAAAGCGGTGGAAGTTCCCGAAATGAACGTAAGCTACAA ACCTCAGAAGATATCGCCTAAGTTTGATGGCACGGTGCGGCAGCTTTTGT ATGCCAAGATCCGTGACGCTTGGCTACATCCGCAGTTCATGACCGACGTG ACAAAACCGATGAACATGGATCCACTTCTAGATCAATATGTCAGACATTT GTCCGGGGGAGAACTTCAACGAGTGGCTCTCGTAATTGCTCTTGGAAAAC CAGCCGATGTATATCTCATAGATGAACCTAGTGCCTATCTTGATTCTGAG CAAAGAATCATAGCGGCGAAGATGATTAAGAGATTCATCTTGCACGCAAA GAAGACGGCCTTTGTCGTAGAACATGATTTTATCATGAGTTCTTACCTCG CTGACCGCGTCATTGTGTACGAAGGATCCCCAGCAAAGGAATGCACTGCT TGCGCGCCACAAACGTTGGTCTCGGGAATGAATAGGTTCCTCAAGAACCT GGAAATCACGTTTAGACGGGATCCTAGCAATTTCCGACCGAGAATTAATA AACTCGATTCCGTGAAGGACAGGGAACAGAAGTTGGTTGGACAATATTTC TACGTAGATGTTGCGGCAGATGAACGTGACGAAGACTGA back to top
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