Gchil10023.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10023.t1
Unique NameGchil10023.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:450448..451506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10023Gchil10023Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 450448..451506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10023.t1Gchil10023.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 450448..451506 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10023.t1.start1Gchil10023.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 450448..450450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10023.t1.CDS1Gchil10023.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 450448..450502 +
Gchil10023.t1.CDS2Gchil10023.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 450587..450637 +
Gchil10023.t1.CDS3Gchil10023.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 451200..451287 +
Gchil10023.t1.CDS4Gchil10023.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 451383..451506 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10023.t1.exon1Gchil10023.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 450448..450502 +
Gchil10023.t1.exon2Gchil10023.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 450587..450637 +
Gchil10023.t1.exon3Gchil10023.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 451200..451287 +
Gchil10023.t1.exon4Gchil10023.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 451383..451506 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10023.t1.intron1Gchil10023.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 450503..450586 +
Gchil10023.t1.intron2Gchil10023.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 450638..451199 +
Gchil10023.t1.intron3Gchil10023.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 451288..451382 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10023.t1.stop1Gchil10023.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 451504..451506 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10023.t1 ID=Gchil10023.t1|Name=Gchil10023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MAKEDRVKVCQHILDKLVEAYPNIRDREQLKNRTRNNLAHQTSRRKPPER
QTLQLSVPQVVLKESLSHRPLRVLLRRPRPPVVHRPKLLMHLQQMMLKHC
AASCK*
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spliced messenger RNA

>Gchil10023.t1 ID=Gchil10023.t1|Name=Gchil10023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00004442_pilon:450448..451506+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGGAGGACCGCGTAAAGGTCTGCCAACATATTCTGGACAAGCT
AGTCGAGGCTTACCCAAACATTCGTGATCGTGAACAACTCAAGAACCGGa
cacgcaACAACCTAGCGCATCAAACAAGCCGCAGGAAACCGCCAGAAAGG
CAAACGCTGCAGCTAAGCGTCCCCCAGGTGGTGCTGAAGGAAAGCCTATC
ACATCGTCCACTAAGAGTACTGCTGCGGCGTCCACGTCCTCCAGTCGTGC
ACCGGCCCAAGCTCCTCATGCAcctacagcaaatgatgctgaagcactgc
gccgcgtcttgcaaatga
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protein sequence of Gchil10023.t1

>Gchil10023.t1 ID=Gchil10023.t1|Name=Gchil10023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MAKEDRVKVCQHILDKLVEAYPNIRDREQLKNRTRNNLAHQTSRRKPPER
QTLQLSVPQVVLKESLSHRPLRVLLRRPRPPVVHRPKLLMHLQQMMLKHC
AASCK*
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mRNA from alignment at tig00004442_pilon:450448..451506+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10023.t1 ID=Gchil10023.t1|Name=Gchil10023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004442_pilon:450448..451506+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAGGAGGACCGCGTAAAGGTCTGCCAACATATTCTGGACAAGCT
AGTCGGTAAGTCAAACTAAACGCGGAAAAGAACACTGTCAAAATTCTCGC
TTTCCACTCATACTCACACTTTGAACCTATGCTCCACAGAGGCTTACCCA
AACATTCGTGATCGTGAACAACTCAAGAACCGGacacgcagttttgagct
gaaaatatttgagacagctcagagtcgccaggattacctggagtgtattg
ccgagggtctaagccagattgatcagtttcagcgtcgtcatagggcatct
cattcaggaactgcggccacggccacagccacagctgtcgccgctgccgc
cgcacaaggtgtccaaggcgtccaaggcatccaaggcatgcagaatgtgc
aggcccgtcagggtgggcaaggggttcagaacgttcaaggcgtccaggca
gtccagggcgttcgaaatgtccaAAACGTGCAAAGCGTCcaaggcatgca
aggtatacaaggtatgcaaggtatgcaagCAGTAACTGGAGCACAGGCGC
AAGCTGCTCTGCGTCATCAGCTACAGAATCGTCAGCAATCACATCCAAAT
AATGTGCAACGCCAACAAATGCTAGCTCAGCAGAGGAACCTCCATGAAAT
CATGCACGCGCGCAATATTCAGTTACAACGTcaacaagagcaccagcgac
aacaacaacctttgcaacagcaacagcCCCAACGCGGTTTGCAAGCTGTA
AGACAACCTAGCGCATCAAACAAGCCGCAGGAAACCGCCAGAAAGGCAAA
CGCTGCAGCTAAGCGTCCCCCAGGTGGTGCTGAAGGAAAGGTATGTTATT
ATCAGTCTTGCACTAATGTTCTCGCGATTTGCCTCGTTTCTAACATGGTT
CCATTTGCATCTGCCTCATTCTATGTCCGAATAAGCCTATCACATCGTCC
ACTAAGAGTACTGCTGCGGCGTCCACGTCCTCCAGTCGTGCACCGGCCCA
AGCTCCTCATGCAcctacagcaaatgatgctgaagcactgcgccgcgtct
tgcaaatga
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Coding sequence (CDS) from alignment at tig00004442_pilon:450448..451506+

>Gchil10023.t1 ID=Gchil10023.t1|Name=Gchil10023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00004442_pilon:450448..451506+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAGGAGGACCGCGTAAAGGTCTGCCAACATATTCTGGACAAGCT
AGTCGAGGCTTACCCAAACATTCGTGATCGTGAACAACTCAAGAACCGGa
cacgcaACAACCTAGCGCATCAAACAAGCCGCAGGAAACCGCCAGAAAGG
CAAACGCTGCAGCTAAGCGTCCCCCAGGTGGTGCTGAAGGAAAGCCTATC
ACATCGTCCACTAAGAGTACTGCTGCGGCGTCCACGTCCTCCAGTCGTGC
ACCGGCCCAAGCTCCTCATGCAcctacagcaaatgatgctgaagcactgc
gccgcgtcttgcaaatga
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