Gchil10022.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10022.t1
Unique NameGchil10022.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:421537..423003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo144493
PFAMsRVT_1,RVT_3
Max annot lvl2759|Eukaryota
Evalue2.89e-08
EggNOG OGsCOG2801@1|root,2RZ6W@2759|Eukaryota,3QJ6I@4776|Peronosporales
DescriptionReverse transcriptase-like
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10022Gchil10022Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 421537..423003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10022.t1Gchil10022.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 421537..423003 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10022.t1.start1Gchil10022.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 421537..421539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10022.t1.CDS1Gchil10022.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 421537..421879 +
Gchil10022.t1.CDS2Gchil10022.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 422023..422147 +
Gchil10022.t1.CDS3Gchil10022.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 422254..423003 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10022.t1.exon1Gchil10022.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 421537..421879 +
Gchil10022.t1.exon2Gchil10022.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 422023..422147 +
Gchil10022.t1.exon3Gchil10022.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 422254..423003 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10022.t1.intron1Gchil10022.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 421880..422022 +
Gchil10022.t1.intron2Gchil10022.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 422148..422253 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10022.t1.stop1Gchil10022.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 423001..423003 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=406bp
MATQILTLEETNVMPVTREKILREQAQDAYCRTLADQIGFKGSPFDVDHN
GYIVRRSTFYGSLQKVVPKALRPRVLYLAHYPRLSGHPGATRMYYTLTQQ
FYWPHMAHDVYTFVAHSSDHRRVVEAHEGDTCKGDDVNNADDRFLQQLGL
PVWCTTTNGQVERLNHTLVSRLRHYTEEHQTGWDKLVQPLTYSYKHQVHR
STQATPFDLVLLRHPPGIVVQGDHTTSTAAGALTPAQVKRNTLVMLRRAL
KHAESRLTAAQKRYKADYDRRVTNVVSVSSGQYVYIDNPPSGRRPRPGDE
ADDEAIDSDINSKLLPKSVGPHKVLNASDPTVTVDQDGIPNTISIDRITV
APETVQHRMEAGTSAREPRALALRTRPSEDPTPIEVNDDRQRDDPDYNPL
TGAEI*
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spliced messenger RNA

>Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00004442_pilon:421537..423003+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggccacgcagatactgaccctagaggaaacgaatgtcatgcccgtaac
ccgagagaaaattctacgagaacaggcccaggatgcgtactgcagaaccc
tggctgaccaaattggtttcaaaggatcaccattcgatgtggaccacaat
ggctacatcgtgagaaggtcaaccttctatggtagccttcaaaaggtggt
tccgaaggcactgcggccgagagtcttgtatcttgcgcactacccgcgac
tatcgggacaccccggtgccaccaggatgtattacaccttgacgcaacag
ttctattggcctcatatggcccatgatgtctatacctttgtagcacattc
tagtgatcaccgacgggttgtcgaagctcacgagggtgatacctgtaaag
gagacgacgtcaacaacgctgacgatcgctttcttcaacaattgggtcta
cccgtatggtgcaccactacaaacggacaggtcgagcgccttaaccacac
attggtatcaaggctacgacactatacggaagagcaccaaactgggtggg
ataagctggtgcaaccgctcacctactcctataaacatcaggtacaccgg
tcaactcaggcaactccctttgatttggttcttttgcgacaccccccagg
tattgtagtgcagggagatcatactaccagcactgcagctggcgcactga
cccctgcccaagtcaagcgaaatacccttgtgatgttgaggagggctctc
aaacatgcagagagccgcctcaccgcagcccagaagcggtacaaggccga
ctacgaccgtagggtaaccaatgtggtctccgtatcttcgggacaatatg
tctatatagacaacccaccttcaggtagaagaccacgaccgggtgatgaa
gcggacgatgaagctattgatagcgatatcaattcgaagcttctacccaa
atcagtgggacctcataaggtattgaacgcatctgaccccaccgttacgg
ttgaccaagatggaataccgaatacgatatcaattgaccgtattacggta
gcacctgaaacggttcaacatcgcatggaggcaggcacctcagcccgaga
acccagagctctagctctgcgcactcgaccctcggaggaccccaccccaa
ttgaggtaaacgatgaccgtcaacgtgatgatccggattacaaccctcta
acaggggcggaaatttaa
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protein sequence of Gchil10022.t1

>Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=406bp
MATQILTLEETNVMPVTREKILREQAQDAYCRTLADQIGFKGSPFDVDHN
GYIVRRSTFYGSLQKVVPKALRPRVLYLAHYPRLSGHPGATRMYYTLTQQ
FYWPHMAHDVYTFVAHSSDHRRVVEAHEGDTCKGDDVNNADDRFLQQLGL
PVWCTTTNGQVERLNHTLVSRLRHYTEEHQTGWDKLVQPLTYSYKHQVHR
STQATPFDLVLLRHPPGIVVQGDHTTSTAAGALTPAQVKRNTLVMLRRAL
KHAESRLTAAQKRYKADYDRRVTNVVSVSSGQYVYIDNPPSGRRPRPGDE
ADDEAIDSDINSKLLPKSVGPHKVLNASDPTVTVDQDGIPNTISIDRITV
APETVQHRMEAGTSAREPRALALRTRPSEDPTPIEVNDDRQRDDPDYNPL
TGAEI*
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mRNA from alignment at tig00004442_pilon:421537..423003+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00004442_pilon:421537..423003+ (Gracilaria chilensis NLEC103_M9 male)
atggccacgcagatactgaccctagaggaaacgaatgtcatgcccgtaac
ccgagagaaaattctacgagaacaggcccaggatgcgtactgcagaaccc
tggctgaccaaattggtttcaaaggatcaccattcgatgtggaccacaat
ggctacatcgtgagaaggtcaaccttctatggtagccttcaaaaggtggt
tccgaaggcactgcggccgagagtcttgtatcttgcgcactacccgcgac
tatcgggacaccccggtgccaccaggatgtattacaccttgacgcaacag
ttctattggcctcatatggcccatgatgtctatacctttgtaggtcaatg
ctaatcttgtgttcgtacccgcggtggtattcgaaagcatcgaaagtatc
tcaagctgtttccagcagcgggtccactggagtttgttgcgatagacctt
ctaggaccacttcccaaaaccaataatgggtatcagcacattctagtgat
caccgacgggttgtcgaagctcacgagggtgatacctgtaaaggagacga
cgtcaacaacgctgacgatcgctttcttcaacaattgggtctacccgtat
ggtgcaccactgtacctacttaccgataatggttaaaacctgtaatcgaa
gttcttcgaagcagtctgtaacctcttgggtatcaagcactatttcacta
ctgcctaccacccgcagacaaacggacaggtcgagcgccttaaccacaca
ttggtatcaaggctacgacactatacggaagagcaccaaactgggtggga
taagctggtgcaaccgctcacctactcctataaacatcaggtacaccggt
caactcaggcaactccctttgatttggttcttttgcgacaccccccaggt
attgtagtgcagggagatcatactaccagcactgcagctggcgcactgac
ccctgcccaagtcaagcgaaatacccttgtgatgttgaggagggctctca
aacatgcagagagccgcctcaccgcagcccagaagcggtacaaggccgac
tacgaccgtagggtaaccaatgtggtctccgtatcttcgggacaatatgt
ctatatagacaacccaccttcaggtagaagaccacgaccgggtgatgaag
cggacgatgaagctattgatagcgatatcaattcgaagcttctacccaaa
tcagtgggacctcataaggtattgaacgcatctgaccccaccgttacggt
tgaccaagatggaataccgaatacgatatcaattgaccgtattacggtag
cacctgaaacggttcaacatcgcatggaggcaggcacctcagcccgagaa
cccagagctctagctctgcgcactcgaccctcggaggaccccaccccaat
tgaggtaaacgatgaccgtcaacgtgatgatccggattacaaccctctaa
caggggcggaaatttaa
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Coding sequence (CDS) from alignment at tig00004442_pilon:421537..423003+

>Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00004442_pilon:421537..423003+ (Gracilaria chilensis NLEC103_M9 male)
atggccacgcagatactgaccctagaggaaacgaatgtcatgcccgtaac
ccgagagaaaattctacgagaacaggcccaggatgcgtactgcagaaccc
tggctgaccaaattggtttcaaaggatcaccattcgatgtggaccacaat
ggctacatcgtgagaaggtcaaccttctatggtagccttcaaaaggtggt
tccgaaggcactgcggccgagagtcttgtatcttgcgcactacccgcgac
tatcgggacaccccggtgccaccaggatgtattacaccttgacgcaacag
ttctattggcctcatatggcccatgatgtctatacctttgtagcacattc
tagtgatcaccgacgggttgtcgaagctcacgagggtgatacctgtaaag
gagacgacgtcaacaacgctgacgatcgctttcttcaacaattgggtcta
cccgtatggtgcaccactacaaacggacaggtcgagcgccttaaccacac
attggtatcaaggctacgacactatacggaagagcaccaaactgggtggg
ataagctggtgcaaccgctcacctactcctataaacatcaggtacaccgg
tcaactcaggcaactccctttgatttggttcttttgcgacaccccccagg
tattgtagtgcagggagatcatactaccagcactgcagctggcgcactga
cccctgcccaagtcaagcgaaatacccttgtgatgttgaggagggctctc
aaacatgcagagagccgcctcaccgcagcccagaagcggtacaaggccga
ctacgaccgtagggtaaccaatgtggtctccgtatcttcgggacaatatg
tctatatagacaacccaccttcaggtagaagaccacgaccgggtgatgaa
gcggacgatgaagctattgatagcgatatcaattcgaagcttctacccaa
atcagtgggacctcataaggtattgaacgcatctgaccccaccgttacgg
ttgaccaagatggaataccgaatacgatatcaattgaccgtattacggta
gcacctgaaacggttcaacatcgcatggaggcaggcacctcagcccgaga
acccagagctctagctctgcgcactcgaccctcggaggaccccaccccaa
ttgaggtaaacgatgaccgtcaacgtgatgatccggattacaaccctcta
acaggggcggaaatttaa
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