Gchil10019.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10019.t1
Unique NameGchil10019.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:384232..386642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10019Gchil10019Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 384232..386642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10019.t1Gchil10019.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 384232..386642 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10019.t1.start1Gchil10019.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 384232..384234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10019.t1.CDS1Gchil10019.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 384232..384286 +
Gchil10019.t1.CDS2Gchil10019.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 384371..385071 +
Gchil10019.t1.CDS3Gchil10019.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 385164..385217 +
Gchil10019.t1.CDS4Gchil10019.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 385983..385991 +
Gchil10019.t1.CDS5Gchil10019.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 386310..386642 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10019.t1.exon1Gchil10019.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 384232..384286 +
Gchil10019.t1.exon2Gchil10019.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 384371..385071 +
Gchil10019.t1.exon3Gchil10019.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 385164..385217 +
Gchil10019.t1.exon4Gchil10019.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 385983..385991 +
Gchil10019.t1.exon5Gchil10019.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 386310..386642 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10019.t1.intron1Gchil10019.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 384287..384370 +
Gchil10019.t1.intron2Gchil10019.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 385072..385163 +
Gchil10019.t1.intron3Gchil10019.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 385218..385982 +
Gchil10019.t1.intron4Gchil10019.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 385992..386309 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10019.t1.stop1Gchil10019.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 386640..386642 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10019.t1 ID=Gchil10019.t1|Name=Gchil10019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp
MAKEDRVKVCQHILDKLVEAYPNIRDREQLKNRTRSFELKIFETAQSRQD
YLECIAEGLSQIDQFQRRHRASHSGTAATATATAVAAAAAQGVQGVQGIQ
GMQNVQARQGGQGVQNVQGVQAVQGVRNVQNVQSVQGMQGIQGMQGMQAV
TGAQAQAALRHQLQNRQQSHPNNVQRQQMLAQQRNLHEIMHARNIQLQRQ
QEHQRQQQSLQQQQPQRGLQAVRQPSASNKPQETARKVNAAAKRPPGGAE
GKPITSSTKNTAAVSTSSSRLIQVYGTNGVSRANHGPNMGEGLEANAAAT
AAANTAAEGRAAGQTTGAQPQARPAVQCTRGKADGVASHANAHRMNPTQL
TQQLQQALQIQQQPAKQAHQQAQNRAQAANVQQ*
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spliced messenger RNA

>Gchil10019.t1 ID=Gchil10019.t1|Name=Gchil10019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00004442_pilon:384232..386642+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGGAGGACCGCGTAAAGGTCTGCCAACATATTCTGGACAAGCT
AGTCGAGGCTTACCCAAACATTCGTGATCGTGAACAACTCAAGAACCGGA
CACGCAGTTTTGAGCTGAAAATATTTGAGACAGCTCAGAGTCGCCAGGAT
TACCTGGAGTGTATTGCCGAGGGTCTAAGCCAGATTGATCAGTTTCAGCG
TCGTCATAGGGCATCTCATTCAGGAACTGCGGCCACGGCCACAGCCACAG
CTGTCGCCGCTGCCGCCGCACAAGGTGTCCAAGGCGTCCAAGGCATCCAA
GGCATGCAGAATGTGCAGGCCCGTCAGGGTGGGCAAGGGGTTCAGAACGT
TCAAGGCGTCCAGGCAGTCCAGGGCGTTCGAAACGTCCAAAACGTGCAAA
GCGTCcaaggcatgcaaggtatacaaggtatgcaaggtatgcaagCAGTA
ACTGGAGCACAGGCGCAAGCTGCTCTGCGTCATCAGCTACAGAATCGTCA
GCAATCACATCCAAATAATGTGCAACGCCAACAAATGCTAGCTCAGCAGA
GGAACCTCCATGAAATCATGCACGCGCGCAATATTCAGTTacaacgtcaa
caagagcaccagcgacaacaacaatctttgcaacagcaacagcCCCAACG
CGGTTTGCAAGCTGTAAGACAACCTAGCGCATCAAACAAGCCGCAGGAAA
CAGCCAGAAAGGTAAACGCTGCAGCTAAGCGTCCCCCAGGTGGTGCTGAA
GGAAAGCCTATCACATCGTCCACTAAGAATACTGCTGCGGTGTCCACGTC
CTCCAGTCGTctgattcaggtatatgggACAAACGGAGTCAGCCGAGCGA
ACCATGGTCCCAATATGGGAGAAGGGCTGGAAGCAAATGCGGCTGCAACT
GCCGCTGCTAACACAGCTGCGGAAGGCAGGGCTGCTGGACAAACGACTGG
TGCACAGCCACAAGCTAGGCCTGCAGTACAATGTACTCGCGGCAAGGCGG
ATGGCGTTGCCAGTCACGCTAATGCTCATCGAATGAATCCAACGCAGCTG
ACACAACAGCTACAGCAAGCGCTACAGATTCAGCAGCAGCCAGCGAAACA
GGCGCATCAGCAAGCACAAAATCGAGCGCAAGCGGCGAACGTTCAGCAAT
AG
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protein sequence of Gchil10019.t1

>Gchil10019.t1 ID=Gchil10019.t1|Name=Gchil10019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=384bp
MAKEDRVKVCQHILDKLVEAYPNIRDREQLKNRTRSFELKIFETAQSRQD
YLECIAEGLSQIDQFQRRHRASHSGTAATATATAVAAAAAQGVQGVQGIQ
GMQNVQARQGGQGVQNVQGVQAVQGVRNVQNVQSVQGMQGIQGMQGMQAV
TGAQAQAALRHQLQNRQQSHPNNVQRQQMLAQQRNLHEIMHARNIQLQRQ
QEHQRQQQSLQQQQPQRGLQAVRQPSASNKPQETARKVNAAAKRPPGGAE
GKPITSSTKNTAAVSTSSSRLIQVYGTNGVSRANHGPNMGEGLEANAAAT
AAANTAAEGRAAGQTTGAQPQARPAVQCTRGKADGVASHANAHRMNPTQL
TQQLQQALQIQQQPAKQAHQQAQNRAQAANVQQ*
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mRNA from alignment at tig00004442_pilon:384232..386642+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10019.t1 ID=Gchil10019.t1|Name=Gchil10019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2411bp|location=Sequence derived from alignment at tig00004442_pilon:384232..386642+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAGGAGGACCGCGTAAAGGTCTGCCAACATATTCTGGACAAGCT
AGTCGGTAAGTCAAACTAAACGCGGAAAAGAACACTGTCAAAATTCTCGC
TTTCCACTCATACTCACACTTTGAACCTATGCTCCACAGAGGCTTACCCA
AACATTCGTGATCGTGAACAACTCAAGAACCGGACACGCAGTTTTGAGCT
GAAAATATTTGAGACAGCTCAGAGTCGCCAGGATTACCTGGAGTGTATTG
CCGAGGGTCTAAGCCAGATTGATCAGTTTCAGCGTCGTCATAGGGCATCT
CATTCAGGAACTGCGGCCACGGCCACAGCCACAGCTGTCGCCGCTGCCGC
CGCACAAGGTGTCCAAGGCGTCCAAGGCATCCAAGGCATGCAGAATGTGC
AGGCCCGTCAGGGTGGGCAAGGGGTTCAGAACGTTCAAGGCGTCCAGGCA
GTCCAGGGCGTTCGAAACGTCCAAAACGTGCAAAGCGTCcaaggcatgca
aggtatacaaggtatgcaaggtatgcaagCAGTAACTGGAGCACAGGCGC
AAGCTGCTCTGCGTCATCAGCTACAGAATCGTCAGCAATCACATCCAAAT
AATGTGCAACGCCAACAAATGCTAGCTCAGCAGAGGAACCTCCATGAAAT
CATGCACGCGCGCAATATTCAGTTacaacgtcaacaagagcaccagcgac
aacaacaatctttgcaacagcaacagcCCCAACGCGGTTTGCAAGCTGTA
AGACAACCTAGCGCATCAAACAAGCCGCAGGAAACAGCCAGAAAGGTAAA
CGCTGCAGCTAAGCGTCCCCCAGGTGGTGCTGAAGGAAAGGTATGTTATT
AGTCTTGCACTAATGTTCTCACGATTTGCCTCGTTTCTAACATGGTGCCA
TTTGCATCTGCCTCATTCTATGTCCGAATAAGCCTATCACATCGTCCACT
AAGAATACTGCTGCGGTGTCCACGTCCTCCAGTCGTGTACCGGCCCAAGC
TCCTCATGCAcctacagcaaatgatgctgaagcactgcgccgcgtcttgc
aaatgaatgcgaaccaggcggcgttcgcaaaggcgcaagccgccctggcc
cgcttgccgcccagcgcccaacaggaatatctcagggctcttgctcggca
gcaaatcccgtttgcttcgcaaccacagccctctgttgctgcatctaccc
agggggaaatattttggaacaagctggaagatataaagaggaagtacatg
gttcagctgactcgcttggtcccggccatccggaaaatggaattcaagca
aaagtcgccgaaggagcaattcttaaagttcctaactgactgtctcagag
ttttgagtatcaaacgtggagacccaacagcgaacgagatggactacagc
gttctggaacgcactgaaggctttttgcaaacgctgattcagttctatgg
gACAAACGGAGTCAGCCGAGCGAACCATGGTCCCAATATGGGAGAAGGGC
TGGAAGCAAATGCtacccatggggatatgttttggaacaagctggaagat
ataaagagaaagtacatggctccattgaaccagctattcccgcatacccg
gaaagtggagttcgagcaaaattcgcaaaaggagcaattcttcaagttca
taagtgattgtcacaagattcttgaattcaagcgtggagacccattggcg
aacgaggtggactacagcgttctggaacgcactgaagactttttgcaaaa
gctgattcaggtatatgggACAAACGGAGTCAGCCGAGCGAACCATGGTC
CCAATATGGGAGAAGGGCTGGAAGCAAATGCtacccatggggatatgttt
tggaacaagctggaagatataaagagaaagtacatggctccattgaacca
gctattcccgcatacccggaaagtggagttcgagcaaaattcgcaaaagg
agcaattcttcaagttcataagtgattgtcacaagattcttgaattcaag
cgtggagacccattggcgaacgaggtggactacagcgttctggaacgcac
tgaagactttttgcaaaagctgattcaggtatatgggACAAACGGAGTCA
GCCGAGCGAACCATGGTCCCAATATGGGAGAAGGGCTGGAAGCAAATGCG
GCTGCAACTGCCGCTGCTAACACAGCTGCGGAAGGCAGGGCTGCTGGACA
AACGACTGGTGCACAGCCACAAGCTAGGCCTGCAGTACAATGTACTCGCG
GCAAGGCGGATGGCGTTGCCAGTCACGCTAATGCTCATCGAATGAATCCA
ACGCAGCTGACACAACAGCTACAGCAAGCGCTACAGATTCAGCAGCAGCC
AGCGAAACAGGCGCATCAGCAAGCACAAAATCGAGCGCAAGCGGCGAACG
TTCAGCAATAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:384232..386642+

>Gchil10019.t1 ID=Gchil10019.t1|Name=Gchil10019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00004442_pilon:384232..386642+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAGGAGGACCGCGTAAAGGTCTGCCAACATATTCTGGACAAGCT
AGTCGAGGCTTACCCAAACATTCGTGATCGTGAACAACTCAAGAACCGGA
CACGCAGTTTTGAGCTGAAAATATTTGAGACAGCTCAGAGTCGCCAGGAT
TACCTGGAGTGTATTGCCGAGGGTCTAAGCCAGATTGATCAGTTTCAGCG
TCGTCATAGGGCATCTCATTCAGGAACTGCGGCCACGGCCACAGCCACAG
CTGTCGCCGCTGCCGCCGCACAAGGTGTCCAAGGCGTCCAAGGCATCCAA
GGCATGCAGAATGTGCAGGCCCGTCAGGGTGGGCAAGGGGTTCAGAACGT
TCAAGGCGTCCAGGCAGTCCAGGGCGTTCGAAACGTCCAAAACGTGCAAA
GCGTCcaaggcatgcaaggtatacaaggtatgcaaggtatgcaagCAGTA
ACTGGAGCACAGGCGCAAGCTGCTCTGCGTCATCAGCTACAGAATCGTCA
GCAATCACATCCAAATAATGTGCAACGCCAACAAATGCTAGCTCAGCAGA
GGAACCTCCATGAAATCATGCACGCGCGCAATATTCAGTTacaacgtcaa
caagagcaccagcgacaacaacaatctttgcaacagcaacagcCCCAACG
CGGTTTGCAAGCTGTAAGACAACCTAGCGCATCAAACAAGCCGCAGGAAA
CAGCCAGAAAGGTAAACGCTGCAGCTAAGCGTCCCCCAGGTGGTGCTGAA
GGAAAGCCTATCACATCGTCCACTAAGAATACTGCTGCGGTGTCCACGTC
CTCCAGTCGTctgattcaggtatatgggACAAACGGAGTCAGCCGAGCGA
ACCATGGTCCCAATATGGGAGAAGGGCTGGAAGCAAATGCGGCTGCAACT
GCCGCTGCTAACACAGCTGCGGAAGGCAGGGCTGCTGGACAAACGACTGG
TGCACAGCCACAAGCTAGGCCTGCAGTACAATGTACTCGCGGCAAGGCGG
ATGGCGTTGCCAGTCACGCTAATGCTCATCGAATGAATCCAACGCAGCTG
ACACAACAGCTACAGCAAGCGCTACAGATTCAGCAGCAGCCAGCGAAACA
GGCGCATCAGCAAGCACAAAATCGAGCGCAAGCGGCGAACGTTCAGCAAT
AG
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