Gchil10014.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10014.t1
Unique NameGchil10014.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length90
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:257966..258576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4513.MLOC_51200.1
Max annot lvl35493|Streptophyta
Evalue1.09e-08
EggNOG OGs2CVGS@1|root,2S4GF@2759|Eukaryota,37W8B@33090|Viridiplantae,3GK4N@35493|Streptophyta,3M0K2@4447|Liliopsida,3IIBE@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10014Gchil10014Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 257966..258576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10014.t1Gchil10014.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 257966..258576 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10014.t1.stop1Gchil10014.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 257966..257968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10014.t1.CDS1Gchil10014.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 257966..258042 -
Gchil10014.t1.CDS2Gchil10014.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 258135..258222 -
Gchil10014.t1.CDS3Gchil10014.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 258310..258399 -
Gchil10014.t1.CDS4Gchil10014.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 258562..258576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10014.t1.exon1Gchil10014.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 257966..258042 -
Gchil10014.t1.exon2Gchil10014.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 258135..258222 -
Gchil10014.t1.exon3Gchil10014.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 258310..258399 -
Gchil10014.t1.exon4Gchil10014.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 258562..258576 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10014.t1.intron1Gchil10014.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 258043..258134 -
Gchil10014.t1.intron2Gchil10014.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 258223..258309 -
Gchil10014.t1.intron3Gchil10014.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 258400..258561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10014.t1.start1Gchil10014.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 258574..258576 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10014.t1 ID=Gchil10014.t1|Name=Gchil10014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=90bp
MSASVMQAAARQLSRAAGPRAASTRAFHATPASRGAGGYDYLHAKYMYQL
RFKPAPKLLTGLLIGGGVATGVGIPLFAVWFGQKKAGVL*
back to top

spliced messenger RNA

>Gchil10014.t1 ID=Gchil10014.t1|Name=Gchil10014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp|location=Sequence derived from alignment at tig00004442_pilon:257966..258576- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCTCAGTGATGCAAGCTGCTGCTCGACAGCTCTCTCGTGCTGC
TGGCCCTCGCGCCGCCAGCACTCGCGCCTTCCATGCCACCCCTGCTTCTC
GCGGCGCGGGTGGTTATGACTATCTACATGCAAAATACATGTATCAACTA
CGCTTTAAGCCGGCCCCCAAGTTGCTCACTGGCTTGCTAATCGGCGGCGG
GGTGGCCACCGGTGTTGGCATACCGCTGTTTGCCGTTTGGTTTGGGCAGA
AAAAGGCTGGAGTTCTCTAG
back to top

protein sequence of Gchil10014.t1

>Gchil10014.t1 ID=Gchil10014.t1|Name=Gchil10014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=90bp
MSASVMQAAARQLSRAAGPRAASTRAFHATPASRGAGGYDYLHAKYMYQL
RFKPAPKLLTGLLIGGGVATGVGIPLFAVWFGQKKAGVL*
back to top

mRNA from alignment at tig00004442_pilon:257966..258576-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10014.t1 ID=Gchil10014.t1|Name=Gchil10014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=611bp|location=Sequence derived from alignment at tig00004442_pilon:257966..258576- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCTCAGTGGTATGTTTGTTCGAGATCCTGCCGTCAGCGCGCCT
GTCCCGCGCTCTCGCTTGCTATGCGTTTGTCAACATGCCGACGCGACGCG
TCCCCGCGCCTACATCGTTTGCTGACTTTTCTGCCGTGTGACGGGTTGTG
ATGTGCGTCTTTACGCCGCGAATTCAGATGCAAGCTGCTGCTCGACAGCT
CTCTCGTGCTGCTGGCCCTCGCGCCGCCAGCACTCGCGCCTTCCATGCCA
CCCCTGCTTCTCGCGGCGTACGTTCTTCACACACAGCTCTGACCAGCGCT
TGATCGACCTCCTCGTGACGCTGACCAATCGCTCCGTGCTTTTTTTTGGT
GCAGGCGGGTGGTTATGACTATCTACATGCAAAATACATGTATCAACTAC
GCTTTAAGCCGGCCCCCAAGTTGCTCACTGGCTTGCTAATCGGTGCGTTG
TGTCCCGCTGCCTTCCGTTTTTCTTAAGATGCCTCAACGGCTTTCACTCA
CACTACTACCTTCTCGTCCTTTTTTCGCATTCAGGCGGCGGGGTGGCCAC
CGGTGTTGGCATACCGCTGTTTGCCGTTTGGTTTGGGCAGAAAAAGGCTG
GAGTTCTCTAG
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:257966..258576-

>Gchil10014.t1 ID=Gchil10014.t1|Name=Gchil10014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=270bp|location=Sequence derived from alignment at tig00004442_pilon:257966..258576- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCTCAGTGATGCAAGCTGCTGCTCGACAGCTCTCTCGTGCTGC
TGGCCCTCGCGCCGCCAGCACTCGCGCCTTCCATGCCACCCCTGCTTCTC
GCGGCGCGGGTGGTTATGACTATCTACATGCAAAATACATGTATCAACTA
CGCTTTAAGCCGGCCCCCAAGTTGCTCACTGGCTTGCTAATCGGCGGCGG
GGTGGCCACCGGTGTTGGCATACCGCTGTTTGCCGTTTGGTTTGGGCAGA
AAAAGGCTGGAGTTCTCTAG
back to top