Gchil10012.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10012.t1
Unique Name	Gchil10012.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:252102..253076 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1380394.JADL01000002_gene1763
PFAMs	NUDIX,NUDIX-like,zf-NADH-PPase
Max annot lvl	204441\|Rhodospirillales
KEGG rclass	RC00002
KEGG ko	ko:K03426
KEGG Reaction	R00103,R03004,R11104
KEGG Pathway	ko00760,ko01100,ko04146,map00760,map01100,map04146
Evalue	4.04e-46
EggNOG OGs	COG2816@1\|root,COG2816@2\|Bacteria,1QGCX@1224\|Proteobacteria,2TVMG@28211\|Alphaproteobacteria,2JPY6@204441\|Rhodospirillales
EC	3.6.1.22
Description	COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding
COG category	L
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10012	Gchil10012	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 252102..253076 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10012.t1.start1	Gchil10012.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 252102..252104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10012.t1.CDS1	Gchil10012.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 252102..253076 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10012.t1.exon1	Gchil10012.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 252102..253076 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10012.t1.stop1	Gchil10012.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 253074..253076 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10012.t1	Gchil10012.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 252102..253076 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:252102..253076+
coding sequence from alignment at tig00004442_pilon:252102..253076+

mRNA sequence

>Gchil10012.t1 ID=Gchil10012.t1|Name=Gchil10012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=325bp
MQTLSNNFFLNTKLRRPDFRGFPSDYDTLMKTADDSYLFLPLWNGHVLIE
NCRVVFWTAPELQYFLSEKSPSDEAHPLIARLCVANNPPTNYVAVDLSPR
EFPSSPETQHALPMRQAFSFLSETDATMVAHAKTLMDWHASAIFCSQCGA
MTSVKHGGNARVCYNAECSTLNIYPRVMPSVIILVIRLDTNEVLLGRKAS
WPKNRYSVIAGYVEIFESLEQAVAREVHEETGVIVDEKSIMYHSSQPWPS
LPHASLMSAFRAYVQNEQHACINVDKNELEDAKWFDRYTLRKLLDKEGGI
TIPGRTSVARRLISDWLRESDDSR*

spliced messenger RNA

>Gchil10012.t1 ID=Gchil10012.t1|Name=Gchil10012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004442_pilon:252102..253076+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACTTTGTCCAACAATTTCTTCCTTAACACTAAATTGAGACGTCC
TGATTTCCGTGGTTTTCCCAGCGATTACGATACTTTGATGAAAACTGCCG
ACGATTCATATCTTTTTCTTCCTTTGTGGAATGGTCACGTATTAATCGAA
AACTGCAGGGTTGTCTTTTGGACCGCGCCTGAACTTCAATATTTTCTAAG
TGAGAAAAGCCCTTCTGATGAGGCCCATCCCCTTATTGCCCGCTTGTGTG
TAGCGAACAACCCTCCGACGAACTATGTCGCTGTGGATCTTTCCCCAAGG
GAATTTCCATCTTCACCTGAAACGCAGCACGCGCTTCCAATGCGTCAGGC
CTTTTCATTCCTCTCGGAAACTGATGCGACTATGGTCGCTCACGCGAAAA
CCCTGATGGACTGGCATGCTTCTGCAATTTTTTGTTCGCAGTGCGGTGCC
ATGACGAGTGTAAAACACGGTGGAAATGCTCGGGTCTGCTACAACGCAGA
ATGTTCTACGCTAAATATATATCCTCGTGTCATGCCATCGGTCATCATCC
TTGTAATTCGTCTGGACACGAATGAAGTTCTTCTAGGGCGGAAGGCTTCA
TGGCCGAAGAACCGCTATTCCGTGATAGCTGGTTATGTCGAGATTTTTGA
AAGTCTGGAACAAGCTGTGGCAAGAGAAGTGCACGAAGAAACTGGTGTCA
TTGTTGATGAGAAATCTATCATGTATCACTCAAGCCAACCCTGGCCTAGT
TTACCTCATGCAAGCCTGATGTCCGCTTTTCGGGCTTATGTGCAGAACGA
ACAACACGCCTGTATAAACGTGGACAAAAACGAGTTGGAAGATGCTAAAT
GGTTCGACCGTTACACATTGCGGAAACTACTTGACAAAGAAGGGGGCATT
ACAATTCCTGGGCGCACCAGCGTTGCTCGCAGGTTGATATCAGATTGGCT
AAGAGAGTCCGATGATTCAAGATAA

protein sequence of Gchil10012.t1

>Gchil10012.t1 ID=Gchil10012.t1|Name=Gchil10012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MQTLSNNFFLNTKLRRPDFRGFPSDYDTLMKTADDSYLFLPLWNGHVLIE
NCRVVFWTAPELQYFLSEKSPSDEAHPLIARLCVANNPPTNYVAVDLSPR
EFPSSPETQHALPMRQAFSFLSETDATMVAHAKTLMDWHASAIFCSQCGA
MTSVKHGGNARVCYNAECSTLNIYPRVMPSVIILVIRLDTNEVLLGRKAS
WPKNRYSVIAGYVEIFESLEQAVAREVHEETGVIVDEKSIMYHSSQPWPS
LPHASLMSAFRAYVQNEQHACINVDKNELEDAKWFDRYTLRKLLDKEGGI
TIPGRTSVARRLISDWLRESDDSR*

mRNA from alignment at tig00004442_pilon:252102..253076+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10012.t1 ID=Gchil10012.t1|Name=Gchil10012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004442_pilon:252102..253076+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAACTTTGTCCAACAATTTCTTCCTTAACACTAAATTGAGACGTCC
TGATTTCCGTGGTTTTCCCAGCGATTACGATACTTTGATGAAAACTGCCG
ACGATTCATATCTTTTTCTTCCTTTGTGGAATGGTCACGTATTAATCGAA
AACTGCAGGGTTGTCTTTTGGACCGCGCCTGAACTTCAATATTTTCTAAG
TGAGAAAAGCCCTTCTGATGAGGCCCATCCCCTTATTGCCCGCTTGTGTG
TAGCGAACAACCCTCCGACGAACTATGTCGCTGTGGATCTTTCCCCAAGG
GAATTTCCATCTTCACCTGAAACGCAGCACGCGCTTCCAATGCGTCAGGC
CTTTTCATTCCTCTCGGAAACTGATGCGACTATGGTCGCTCACGCGAAAA
CCCTGATGGACTGGCATGCTTCTGCAATTTTTTGTTCGCAGTGCGGTGCC
ATGACGAGTGTAAAACACGGTGGAAATGCTCGGGTCTGCTACAACGCAGA
ATGTTCTACGCTAAATATATATCCTCGTGTCATGCCATCGGTCATCATCC
TTGTAATTCGTCTGGACACGAATGAAGTTCTTCTAGGGCGGAAGGCTTCA
TGGCCGAAGAACCGCTATTCCGTGATAGCTGGTTATGTCGAGATTTTTGA
AAGTCTGGAACAAGCTGTGGCAAGAGAAGTGCACGAAGAAACTGGTGTCA
TTGTTGATGAGAAATCTATCATGTATCACTCAAGCCAACCCTGGCCTAGT
TTACCTCATGCAAGCCTGATGTCCGCTTTTCGGGCTTATGTGCAGAACGA
ACAACACGCCTGTATAAACGTGGACAAAAACGAGTTGGAAGATGCTAAAT
GGTTCGACCGTTACACATTGCGGAAACTACTTGACAAAGAAGGGGGCATT
ACAATTCCTGGGCGCACCAGCGTTGCTCGCAGGTTGATATCAGATTGGCT
AAGAGAGTCCGATGATTCAAGATAA

Coding sequence (CDS) from alignment at tig00004442_pilon:252102..253076+

>Gchil10012.t1 ID=Gchil10012.t1|Name=Gchil10012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00004442_pilon:252102..253076+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAACTTTGTCCAACAATTTCTTCCTTAACACTAAATTGAGACGTCC
TGATTTCCGTGGTTTTCCCAGCGATTACGATACTTTGATGAAAACTGCCG
ACGATTCATATCTTTTTCTTCCTTTGTGGAATGGTCACGTATTAATCGAA
AACTGCAGGGTTGTCTTTTGGACCGCGCCTGAACTTCAATATTTTCTAAG
TGAGAAAAGCCCTTCTGATGAGGCCCATCCCCTTATTGCCCGCTTGTGTG
TAGCGAACAACCCTCCGACGAACTATGTCGCTGTGGATCTTTCCCCAAGG
GAATTTCCATCTTCACCTGAAACGCAGCACGCGCTTCCAATGCGTCAGGC
CTTTTCATTCCTCTCGGAAACTGATGCGACTATGGTCGCTCACGCGAAAA
CCCTGATGGACTGGCATGCTTCTGCAATTTTTTGTTCGCAGTGCGGTGCC
ATGACGAGTGTAAAACACGGTGGAAATGCTCGGGTCTGCTACAACGCAGA
ATGTTCTACGCTAAATATATATCCTCGTGTCATGCCATCGGTCATCATCC
TTGTAATTCGTCTGGACACGAATGAAGTTCTTCTAGGGCGGAAGGCTTCA
TGGCCGAAGAACCGCTATTCCGTGATAGCTGGTTATGTCGAGATTTTTGA
AAGTCTGGAACAAGCTGTGGCAAGAGAAGTGCACGAAGAAACTGGTGTCA
TTGTTGATGAGAAATCTATCATGTATCACTCAAGCCAACCCTGGCCTAGT
TTACCTCATGCAAGCCTGATGTCCGCTTTTCGGGCTTATGTGCAGAACGA
ACAACACGCCTGTATAAACGTGGACAAAAACGAGTTGGAAGATGCTAAAT
GGTTCGACCGTTACACATTGCGGAAACTACTTGACAAAGAAGGGGGCATT
ACAATTCCTGGGCGCACCAGCGTTGCTCGCAGGTTGATATCAGATTGGCT
AAGAGAGTCCGATGATTCAAGATAA