Gchil10007.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10007.t1
Unique NameGchil10007.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:232025..232818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005644732.1
PFAMsAAA
Max annot lvl3041|Chlorophyta
KEGG koko:K03066
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Evalue5.96e-108
EggNOG OGsCOG0554@1|root,KOG0728@2759|Eukaryota,37R03@33090|Viridiplantae,34J14@3041|Chlorophyta
DescriptionBelongs to the AAA ATPase family
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10007Gchil10007Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 232025..232818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10007.t1Gchil10007.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 232025..232818 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10007.t1.start1Gchil10007.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 232025..232027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10007.t1.CDS1Gchil10007.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 232025..232723 +
Gchil10007.t1.CDS2Gchil10007.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 232816..232818 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10007.t1.exon1Gchil10007.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 232025..232723 +
Gchil10007.t1.exon2Gchil10007.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 232816..232818 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10007.t1.intron1Gchil10007.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 232724..232815 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10007.t1.stop1Gchil10007.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 232816..232818 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MAAADAMKIGIPATMASGLSIGLRSYYQTKMDQLESKIRDKQENLRRLQA
QRNELNSRVRDLREELLLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV
DIDSSIDITKLSSTARVALRNDSYTLYKVLPSKVDPLVSLMRVENVPDST
YEMIGGLDEQLKAIREVIELPVLHPELFDALGIAQPKGVLLYGPPGTGKT
LLARAVAHHTKCTFIRVSGSELVQKYIGEGSRM*
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spliced messenger RNA

>Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004442_pilon:232025..232818+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCGCAGATGCGATGAAAATCGGAATCCCTGCCACCATGGCTTC
CGGATTGAGCATAGGGTTGAGGTCTTATTATCAAACCAAAATGGATCAGC
TTGAAAGCAAAATCCGTGACAAGCAGGAGAACCTACGTCGTCTTCAAGCA
CAGCGCAATGAACTGAATTCTAGAGTTCGAGATCTACGTGAGGAGCTTCT
CTTGTTGCAAGAACCCGGTGGATACGTTGGAGAGGTCGTCAAGATAATGG
GCAGAAAAAAGGTCCTTGTTAAAGTCCATCCTGAAGGGAAATACATCGTT
GATATCGATAGCTCCATAGATATTACAAAACTCTCATCAACAGCTCGCGT
TGCTCTGAGGAACGATTCATATACACTTTACAAAGTCCTACCGAGCAAAG
TCGACCCGTTGGTTTCGCTGATGAGAGTGGAAAATGTGCCTGATTCCACG
TATGAAATGATTGGGGGTTTGGATGAACAGCTTAAAGCCATTCGTGAAGT
GATTGAACTTCCGGTGTTGCATCCGGAGCTGTTTGATGCCCTTGGTATTG
CCCAGCCGAAGGGTGTGCTCTTGTATGGCCCCCCTGGAACAGGAAAGACA
CTTTTGGCTCGCGCTGTTGCTCATCACACGAAGTGCACATTCATTCGCGT
CTCGGGTTCGGAACTCGTACAGAAATACATCGGAGAAGGCAGTCGAATGt
ag
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protein sequence of Gchil10007.t1

>Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MAAADAMKIGIPATMASGLSIGLRSYYQTKMDQLESKIRDKQENLRRLQA
QRNELNSRVRDLREELLLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV
DIDSSIDITKLSSTARVALRNDSYTLYKVLPSKVDPLVSLMRVENVPDST
YEMIGGLDEQLKAIREVIELPVLHPELFDALGIAQPKGVLLYGPPGTGKT
LLARAVAHHTKCTFIRVSGSELVQKYIGEGSRM*
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mRNA from alignment at tig00004442_pilon:232025..232818+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=794bp|location=Sequence derived from alignment at tig00004442_pilon:232025..232818+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCCGCAGATGCGATGAAAATCGGAATCCCTGCCACCATGGCTTC
CGGATTGAGCATAGGGTTGAGGTCTTATTATCAAACCAAAATGGATCAGC
TTGAAAGCAAAATCCGTGACAAGCAGGAGAACCTACGTCGTCTTCAAGCA
CAGCGCAATGAACTGAATTCTAGAGTTCGAGATCTACGTGAGGAGCTTCT
CTTGTTGCAAGAACCCGGTGGATACGTTGGAGAGGTCGTCAAGATAATGG
GCAGAAAAAAGGTCCTTGTTAAAGTCCATCCTGAAGGGAAATACATCGTT
GATATCGATAGCTCCATAGATATTACAAAACTCTCATCAACAGCTCGCGT
TGCTCTGAGGAACGATTCATATACACTTTACAAAGTCCTACCGAGCAAAG
TCGACCCGTTGGTTTCGCTGATGAGAGTGGAAAATGTGCCTGATTCCACG
TATGAAATGATTGGGGGTTTGGATGAACAGCTTAAAGCCATTCGTGAAGT
GATTGAACTTCCGGTGTTGCATCCGGAGCTGTTTGATGCCCTTGGTATTG
CCCAGCCGAAGGGTGTGCTCTTGTATGGCCCCCCTGGAACAGGAAAGACA
CTTTTGGCTCGCGCTGTTGCTCATCACACGAAGTGCACATTCATTCGCGT
CTCGGGTTCGGAACTCGTACAGAAATACATCGGAGAAGGCAGTCGAATGG
TTCGTGAGCTTTTCGTAATGGCACGcgaacacgcaccatcaatcatattc
atggatgaaattgattccattggctctactcgaatgaacagtag
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Coding sequence (CDS) from alignment at tig00004442_pilon:232025..232818+

>Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00004442_pilon:232025..232818+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCCGCAGATGCGATGAAAATCGGAATCCCTGCCACCATGGCTTC
CGGATTGAGCATAGGGTTGAGGTCTTATTATCAAACCAAAATGGATCAGC
TTGAAAGCAAAATCCGTGACAAGCAGGAGAACCTACGTCGTCTTCAAGCA
CAGCGCAATGAACTGAATTCTAGAGTTCGAGATCTACGTGAGGAGCTTCT
CTTGTTGCAAGAACCCGGTGGATACGTTGGAGAGGTCGTCAAGATAATGG
GCAGAAAAAAGGTCCTTGTTAAAGTCCATCCTGAAGGGAAATACATCGTT
GATATCGATAGCTCCATAGATATTACAAAACTCTCATCAACAGCTCGCGT
TGCTCTGAGGAACGATTCATATACACTTTACAAAGTCCTACCGAGCAAAG
TCGACCCGTTGGTTTCGCTGATGAGAGTGGAAAATGTGCCTGATTCCACG
TATGAAATGATTGGGGGTTTGGATGAACAGCTTAAAGCCATTCGTGAAGT
GATTGAACTTCCGGTGTTGCATCCGGAGCTGTTTGATGCCCTTGGTATTG
CCCAGCCGAAGGGTGTGCTCTTGTATGGCCCCCCTGGAACAGGAAAGACA
CTTTTGGCTCGCGCTGTTGCTCATCACACGAAGTGCACATTCATTCGCGT
CTCGGGTTCGGAACTCGTACAGAAATACATCGGAGAAGGCAGTCGAATGt
ag
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