Gchil10005.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10005.t1
Unique NameGchil10005.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:227709..229076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS096CT
PFAMsATP-sulfurylase,PUA_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K00958,ko:K13811
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
GOsGO:0000103,GO:0001887,GO:0003674,GO:0003824,GO:0004020,GO:0004779,GO:0004781,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006790,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009719,GO:0009725,GO:0009735,GO:0009970,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0022607,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050896,GO:0051259,GO:0051716,GO:0065003,GO:0070206,GO:0070566,GO:0071496,GO:0071840,GO:0071944
Evalue2.46e-198
EggNOG OGsCOG2046@1|root,KOG0636@2759|Eukaryota
EC2.7.1.25,2.7.7.4
Descriptionsulfate adenylyltransferase (ATP) activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10005Gchil10005Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 227709..229076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10005.t1.start1Gchil10005.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 227709..227711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10005.t1.CDS1Gchil10005.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 227709..229076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10005.t1.exon1Gchil10005.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 227709..229076 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10005.t1.stop1Gchil10005.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 229074..229076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10005.t1Gchil10005.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 227709..229076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10005.t1 ID=Gchil10005.t1|Name=Gchil10005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp
MSLAFSFASPIGKPAVVAPTSVSSSSSSSLFSTPAVSYRVRQIQRKSTVS
ATVAPPAAIVDEVIELIVPEAQRPAKMSEAQTLPSVTVSDIDMQWIHVLA
EGWASPLKGFMRESEYLQSQHFNAIRMPDGSLSNMSVPIVLAVNDEQKEQ
LENKSAFALKSPEGEIVAIMRNFEVFAHNKEERCARTFGITDERHPYTKF
IYDSGDYLVGGDLEVLEDIKYNDGLDEFRLTPRQLREEYKKRNADAVFVF
QLRNPIHNGHALLMTSCREELIARGFKNPVLLVHQIGGKVKGDDIPLDVR
IAQNKRVLAEGVLDPNSTLLGIFPSPMLYAGPTEVQWHAKARMNAGCQYY
IVGRDPAGMKHPNGERDMFDAWHGKNVLGMAPGLEKLEILPFRVAAYDKT
VGRMSFFDPSRADDFLFISGTKMRKFASSGETPPDGFMAPTAWKVLVDYY
ATKKQ*
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spliced messenger RNA

>Gchil10005.t1 ID=Gchil10005.t1|Name=Gchil10005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004442_pilon:227709..229076+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTCGCGTTCTCGTTCGCCTCCCCGATTGGCAAACCGGCAGTCGT
CGCTCCGACGTCCGTTTCCTCCTCGTCAAGTTCTTCTCTTTTCTCCACTC
CTGCGGTTTCCTACCGTGTCAGACAAATTCAGAGGAAGTCTACAGTCTCA
GCAACAGTTGCACCCCCAGCCGCCATCGTTGATGAAGTAATTGAGCTCAT
AGTCCCCGAAGCGCAACGCCCAGCAAAGATGTCTGAAGCGCAAACACTTC
CCTCTGTAACTGTCTCTGATATTGACATGCAATGGATTCATGTCCTTGCT
GAAGGGTGGGCCAGTCCTCTTAAGGGCTTCATGCGCGAGAGCGAGTACCT
TCAGAGTCAGCATTTCAATGCGATCCGCATGCCCGATGGGTCGTTGAGTA
ACATGAGTGTTCCAATTGTACTTGCCGTTAATGATGAGCAGAAGGAACAA
CTGGAAAACAAGTCCGCATTTGCGCTCAAATCGCCAGAGGGTGAAATCGT
TGCGATCATGAGGAATTTTGAGGTGTTTGCACACAACAAGGAAGAGCGTT
GTGCGCGAACTTTTGGTATTACAGATGAACGTCACCCCTACACTAAGTTC
ATTTACGATAGCGGGGACTATCTTGTCGGTGGTGACTTGGAGGTGCTCGA
GGACATCAAATATAACGATGGCCTCGATGAGTTCCGACTTACACCTCGTC
AGCTAAGGGAAGAGTATAAAAAGCGTAACGCTGATGCAGTGTTTGTGTTC
CAGTTGCGCAATCCCATTCACAATGGCCATGCCCTTCTGATGACATCCTG
CCGTGAGGAACTCATCGCCCGTGGCTTCAAGAACCCCGTGTTGTTGGTTC
ATCAAATTGGTGGAAAGGTGAAGGGGGATGACATTCCCCTTGATGTCCGT
ATTGCACAGAACAAACGGGTACTGGCCGAAGGAGTTTTGGATCCCAATTC
GACATTATTGGGGATTTTCCCCAGTCCTATGTTGTATGCCGGCCCCACAG
AAGTTCAATGGCACGCTAAAGCCAGAATGAATGCTGGCTGCCAGTACTAC
ATTGTCGGCCGCGACCCTGCTGGAATGAAGCACCCAAATGGAGAAAGGGA
TATGTTTGATGCGTGGCATGGAAAGAATGTCCTTGGCATGGCTCCTGGAC
TTGAAAAGTTGGAAATCCTCCCCTTCCGCGTGGCAGCTTATGATAAGACG
GTAGGGAGAATGTCTTTCTTCGATCCGTCAAGAGCTGATGACTTTTTGTT
CATATCGGGTACGAAGATGCGCAAGTTTGCGTCTTCTGGTGAGACACCCC
CCGATGGGTTCATGGCCCCGACGGCCTGGAAAGTTTTGGTTGACTATTAC
GCCACAAAGAAACAATAG
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protein sequence of Gchil10005.t1

>Gchil10005.t1 ID=Gchil10005.t1|Name=Gchil10005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MSLAFSFASPIGKPAVVAPTSVSSSSSSSLFSTPAVSYRVRQIQRKSTVS
ATVAPPAAIVDEVIELIVPEAQRPAKMSEAQTLPSVTVSDIDMQWIHVLA
EGWASPLKGFMRESEYLQSQHFNAIRMPDGSLSNMSVPIVLAVNDEQKEQ
LENKSAFALKSPEGEIVAIMRNFEVFAHNKEERCARTFGITDERHPYTKF
IYDSGDYLVGGDLEVLEDIKYNDGLDEFRLTPRQLREEYKKRNADAVFVF
QLRNPIHNGHALLMTSCREELIARGFKNPVLLVHQIGGKVKGDDIPLDVR
IAQNKRVLAEGVLDPNSTLLGIFPSPMLYAGPTEVQWHAKARMNAGCQYY
IVGRDPAGMKHPNGERDMFDAWHGKNVLGMAPGLEKLEILPFRVAAYDKT
VGRMSFFDPSRADDFLFISGTKMRKFASSGETPPDGFMAPTAWKVLVDYY
ATKKQ*
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mRNA from alignment at tig00004442_pilon:227709..229076+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10005.t1 ID=Gchil10005.t1|Name=Gchil10005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004442_pilon:227709..229076+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCACTCGCGTTCTCGTTCGCCTCCCCGATTGGCAAACCGGCAGTCGT
CGCTCCGACGTCCGTTTCCTCCTCGTCAAGTTCTTCTCTTTTCTCCACTC
CTGCGGTTTCCTACCGTGTCAGACAAATTCAGAGGAAGTCTACAGTCTCA
GCAACAGTTGCACCCCCAGCCGCCATCGTTGATGAAGTAATTGAGCTCAT
AGTCCCCGAAGCGCAACGCCCAGCAAAGATGTCTGAAGCGCAAACACTTC
CCTCTGTAACTGTCTCTGATATTGACATGCAATGGATTCATGTCCTTGCT
GAAGGGTGGGCCAGTCCTCTTAAGGGCTTCATGCGCGAGAGCGAGTACCT
TCAGAGTCAGCATTTCAATGCGATCCGCATGCCCGATGGGTCGTTGAGTA
ACATGAGTGTTCCAATTGTACTTGCCGTTAATGATGAGCAGAAGGAACAA
CTGGAAAACAAGTCCGCATTTGCGCTCAAATCGCCAGAGGGTGAAATCGT
TGCGATCATGAGGAATTTTGAGGTGTTTGCACACAACAAGGAAGAGCGTT
GTGCGCGAACTTTTGGTATTACAGATGAACGTCACCCCTACACTAAGTTC
ATTTACGATAGCGGGGACTATCTTGTCGGTGGTGACTTGGAGGTGCTCGA
GGACATCAAATATAACGATGGCCTCGATGAGTTCCGACTTACACCTCGTC
AGCTAAGGGAAGAGTATAAAAAGCGTAACGCTGATGCAGTGTTTGTGTTC
CAGTTGCGCAATCCCATTCACAATGGCCATGCCCTTCTGATGACATCCTG
CCGTGAGGAACTCATCGCCCGTGGCTTCAAGAACCCCGTGTTGTTGGTTC
ATCAAATTGGTGGAAAGGTGAAGGGGGATGACATTCCCCTTGATGTCCGT
ATTGCACAGAACAAACGGGTACTGGCCGAAGGAGTTTTGGATCCCAATTC
GACATTATTGGGGATTTTCCCCAGTCCTATGTTGTATGCCGGCCCCACAG
AAGTTCAATGGCACGCTAAAGCCAGAATGAATGCTGGCTGCCAGTACTAC
ATTGTCGGCCGCGACCCTGCTGGAATGAAGCACCCAAATGGAGAAAGGGA
TATGTTTGATGCGTGGCATGGAAAGAATGTCCTTGGCATGGCTCCTGGAC
TTGAAAAGTTGGAAATCCTCCCCTTCCGCGTGGCAGCTTATGATAAGACG
GTAGGGAGAATGTCTTTCTTCGATCCGTCAAGAGCTGATGACTTTTTGTT
CATATCGGGTACGAAGATGCGCAAGTTTGCGTCTTCTGGTGAGACACCCC
CCGATGGGTTCATGGCCCCGACGGCCTGGAAAGTTTTGGTTGACTATTAC
GCCACAAAGAAACAATAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:227709..229076+

>Gchil10005.t1 ID=Gchil10005.t1|Name=Gchil10005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00004442_pilon:227709..229076+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCACTCGCGTTCTCGTTCGCCTCCCCGATTGGCAAACCGGCAGTCGT
CGCTCCGACGTCCGTTTCCTCCTCGTCAAGTTCTTCTCTTTTCTCCACTC
CTGCGGTTTCCTACCGTGTCAGACAAATTCAGAGGAAGTCTACAGTCTCA
GCAACAGTTGCACCCCCAGCCGCCATCGTTGATGAAGTAATTGAGCTCAT
AGTCCCCGAAGCGCAACGCCCAGCAAAGATGTCTGAAGCGCAAACACTTC
CCTCTGTAACTGTCTCTGATATTGACATGCAATGGATTCATGTCCTTGCT
GAAGGGTGGGCCAGTCCTCTTAAGGGCTTCATGCGCGAGAGCGAGTACCT
TCAGAGTCAGCATTTCAATGCGATCCGCATGCCCGATGGGTCGTTGAGTA
ACATGAGTGTTCCAATTGTACTTGCCGTTAATGATGAGCAGAAGGAACAA
CTGGAAAACAAGTCCGCATTTGCGCTCAAATCGCCAGAGGGTGAAATCGT
TGCGATCATGAGGAATTTTGAGGTGTTTGCACACAACAAGGAAGAGCGTT
GTGCGCGAACTTTTGGTATTACAGATGAACGTCACCCCTACACTAAGTTC
ATTTACGATAGCGGGGACTATCTTGTCGGTGGTGACTTGGAGGTGCTCGA
GGACATCAAATATAACGATGGCCTCGATGAGTTCCGACTTACACCTCGTC
AGCTAAGGGAAGAGTATAAAAAGCGTAACGCTGATGCAGTGTTTGTGTTC
CAGTTGCGCAATCCCATTCACAATGGCCATGCCCTTCTGATGACATCCTG
CCGTGAGGAACTCATCGCCCGTGGCTTCAAGAACCCCGTGTTGTTGGTTC
ATCAAATTGGTGGAAAGGTGAAGGGGGATGACATTCCCCTTGATGTCCGT
ATTGCACAGAACAAACGGGTACTGGCCGAAGGAGTTTTGGATCCCAATTC
GACATTATTGGGGATTTTCCCCAGTCCTATGTTGTATGCCGGCCCCACAG
AAGTTCAATGGCACGCTAAAGCCAGAATGAATGCTGGCTGCCAGTACTAC
ATTGTCGGCCGCGACCCTGCTGGAATGAAGCACCCAAATGGAGAAAGGGA
TATGTTTGATGCGTGGCATGGAAAGAATGTCCTTGGCATGGCTCCTGGAC
TTGAAAAGTTGGAAATCCTCCCCTTCCGCGTGGCAGCTTATGATAAGACG
GTAGGGAGAATGTCTTTCTTCGATCCGTCAAGAGCTGATGACTTTTTGTT
CATATCGGGTACGAAGATGCGCAAGTTTGCGTCTTCTGGTGAGACACCCC
CCGATGGGTTCATGGCCCCGACGGCCTGGAAAGTTTTGGTTGACTATTAC
GCCACAAAGAAACAATAG
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