Gchil10004.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10004.t1
Unique NameGchil10004.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:224777..226198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42256.RradSPS_2310
Preferred namemenC
PFAMsMR_MLE_C
Max annot lvl2|Bacteria
KEGG rclassRC00302,RC01053,RC03309
KEGG koko:K01776,ko:K02549,ko:K19802
KEGG ReactionR00260,R04031,R10938
KEGG Pathwayko00130,ko00471,ko01100,ko01110,map00130,map00471,map01100,map01110
KEGG ModuleM00116
GOsGO:0008150,GO:0040007
Evalue7.18e-29
EggNOG OGsCOG4948@1|root,COG4948@2|Bacteria
EC4.2.1.113,5.1.1.20,5.1.1.3
Descriptioncarboxylic acid catabolic process
COG categoryM
BiGG ReactioniNJ661.Rv0553,iSB619.SA_RS09080
BRITEko00000,ko00001,ko00002,ko01000,ko01011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10004Gchil10004Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 224777..226198 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10004.t1.stop1Gchil10004.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 224777..224779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10004.t1.CDS1Gchil10004.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 224777..226198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10004.t1.exon1Gchil10004.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 224777..226198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10004.t1.start1Gchil10004.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 226196..226198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10004.t1Gchil10004.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 224777..226198 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MTSTSGPIRDPVLYFYGTCDRKYAAMAVQLQKLSLNFRCIPIQGAGHNIL
LDSPNALLKNIEDFLKNRSHSSSEFFTILSTVKFEAYSIPLTKPMVVGGR
KVARREGLVVSLVANNNCMGVGDVCPLPGLHHEDIRRCVEEVRDLSSKLH
ALSNPFKLTSNQDLLEFFDFVKSYSPVSRNGFEAAFVQLLSQALGQSCSA
TITSCASHFLNKDLTTSDFVNINGVLPRTSNSTVPPVASPSDSQHRESMN
VSPFEVVKLKVGACENIEDEIQTVRKAVSAAISSGKRIRLDANRAWTPSQ
YEQFETQLTEFAEWIDYIEEPLSTPEQLHQFIVAPLGQSATIPLALDESI
SDCSLEMIQDMASSATCRTLVLKPAVIGSLRNIFRLVSTANKCGCEIVFS
SVFESGIGTAWTSVLASVLGSSQQHHGLGTYKHLLSDVTVPSFDEAVGQG
DGRISSKKCEQFLAQAAETIFNK*
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spliced messenger RNA

>Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004442_pilon:224777..226198- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCTACTTCAGGGCCTATACGAGATCCTGTTCTTTACTTTTACGG
AACATGTGATAGAAAGTATGCAGCGATGGCAGTGCAATTGCAGAAGCTTA
GTTTAAACTTTCGATGCATCCCTATCCAGGGTGCCGGTCACAATATACTT
TTGGATTCACCAAATGCATTACTGAAAAACATCGAAGATTTTCTAAAGAA
TAGAAGCCATTCTTCATCGGAATTCTTCACCATTTTAAGTACTGTGAAAT
TCGAAGCATATTCGATTCCTCTGACAAAACCAATGGTGGTGGGAGGGCGT
AAAGTTGCGAGAAGAGAAGGATTAGTTGTCTCTTTAGTGGCCAACAACAA
TTGTATGGGCGTGGGAGACGTGTGCCCACTTCCTGGTCTACATCACGAAG
ATATCCGTCGTTGTGTAGAAGAGGTTCGGGATCTGTCTTCTAAGCTTCAT
GCACTTTCCAATCCTTTCAAACTTACTTCAAATCAAGACTTGCTTGAGTT
TTTCGATTTCGTTAAGAGCTACTCCCCAGTTTCAAGGAATGGTTTCGAAG
CTGCGTTTGTTCAACTCCTTAGTCAAGCGCTCGGCCAGTCTTGTTCCGCA
ACTATTACTTCTTGCGCCTCGCATTTTTTGAACAAGGACTTGACAACTTC
GGATTTTGTCAACATTAATGGAGTTCTACCGCGAACATCAAACAGCACTG
TTCCACCCGTTGCTTCACCTTCTGACTCGCAACATCGTGAGTCTATGAAT
GTCTCACCATTCGAAGTAGTGAAGTTGAAAGTTGGTGCTTGCGAAAATAT
AGAAGACGAAATCCAAACCGTCCGAAAAGCAGTTTCTGCCGCAATAAGCA
GTGGAAAACGGATACGGCTTGATGCCAATCGAGCATGGACCCCGTCACAG
TACGAACAATTCGAAACTCAGTTGACAGAATTTGCTGAATGGATTGACTA
CATTGAGGAACCGCTTAGCACACCAGAACAATTGCACCAATTCATTGTAG
CCCCGCTTGGACAATCTGCTACAATTCCTCTGGCTTTAGATGAGTCGATT
AGTGATTGCTCACTTGAAATGATTCAAGACATGGCTTCCTCTGCGACATG
TCGAACTCTCGTCTTGAAGCCAGCGGTGATTGGTTCACTACGCAACATTT
TCCGACTGGTTTCCACTGCAAACAAATGTGGTTGCGAGATCGTTTTCAGC
TCTGTTTTCGAAAGTGGGATTGGAACTGCTTGGACTTCTGTACTTGCCAG
CGTGTTAGGCAGTAGTCAACAACATCACGGCTTGGGAACTTATAAGCACC
TACTGAGCGATGTGACAGTGCCATCTTTTGATGAAGCGGTTGGCCAAGGA
GATGGACGAATATCGAGCAAAAAGTGCGAGCAATTCCTAGCTCAAGCTGC
AGAAACGATCTTCAACAAGTAA
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protein sequence of Gchil10004.t1

>Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MTSTSGPIRDPVLYFYGTCDRKYAAMAVQLQKLSLNFRCIPIQGAGHNIL
LDSPNALLKNIEDFLKNRSHSSSEFFTILSTVKFEAYSIPLTKPMVVGGR
KVARREGLVVSLVANNNCMGVGDVCPLPGLHHEDIRRCVEEVRDLSSKLH
ALSNPFKLTSNQDLLEFFDFVKSYSPVSRNGFEAAFVQLLSQALGQSCSA
TITSCASHFLNKDLTTSDFVNINGVLPRTSNSTVPPVASPSDSQHRESMN
VSPFEVVKLKVGACENIEDEIQTVRKAVSAAISSGKRIRLDANRAWTPSQ
YEQFETQLTEFAEWIDYIEEPLSTPEQLHQFIVAPLGQSATIPLALDESI
SDCSLEMIQDMASSATCRTLVLKPAVIGSLRNIFRLVSTANKCGCEIVFS
SVFESGIGTAWTSVLASVLGSSQQHHGLGTYKHLLSDVTVPSFDEAVGQG
DGRISSKKCEQFLAQAAETIFNK*
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mRNA from alignment at tig00004442_pilon:224777..226198-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004442_pilon:224777..226198- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCTACTTCAGGGCCTATACGAGATCCTGTTCTTTACTTTTACGG
AACATGTGATAGAAAGTATGCAGCGATGGCAGTGCAATTGCAGAAGCTTA
GTTTAAACTTTCGATGCATCCCTATCCAGGGTGCCGGTCACAATATACTT
TTGGATTCACCAAATGCATTACTGAAAAACATCGAAGATTTTCTAAAGAA
TAGAAGCCATTCTTCATCGGAATTCTTCACCATTTTAAGTACTGTGAAAT
TCGAAGCATATTCGATTCCTCTGACAAAACCAATGGTGGTGGGAGGGCGT
AAAGTTGCGAGAAGAGAAGGATTAGTTGTCTCTTTAGTGGCCAACAACAA
TTGTATGGGCGTGGGAGACGTGTGCCCACTTCCTGGTCTACATCACGAAG
ATATCCGTCGTTGTGTAGAAGAGGTTCGGGATCTGTCTTCTAAGCTTCAT
GCACTTTCCAATCCTTTCAAACTTACTTCAAATCAAGACTTGCTTGAGTT
TTTCGATTTCGTTAAGAGCTACTCCCCAGTTTCAAGGAATGGTTTCGAAG
CTGCGTTTGTTCAACTCCTTAGTCAAGCGCTCGGCCAGTCTTGTTCCGCA
ACTATTACTTCTTGCGCCTCGCATTTTTTGAACAAGGACTTGACAACTTC
GGATTTTGTCAACATTAATGGAGTTCTACCGCGAACATCAAACAGCACTG
TTCCACCCGTTGCTTCACCTTCTGACTCGCAACATCGTGAGTCTATGAAT
GTCTCACCATTCGAAGTAGTGAAGTTGAAAGTTGGTGCTTGCGAAAATAT
AGAAGACGAAATCCAAACCGTCCGAAAAGCAGTTTCTGCCGCAATAAGCA
GTGGAAAACGGATACGGCTTGATGCCAATCGAGCATGGACCCCGTCACAG
TACGAACAATTCGAAACTCAGTTGACAGAATTTGCTGAATGGATTGACTA
CATTGAGGAACCGCTTAGCACACCAGAACAATTGCACCAATTCATTGTAG
CCCCGCTTGGACAATCTGCTACAATTCCTCTGGCTTTAGATGAGTCGATT
AGTGATTGCTCACTTGAAATGATTCAAGACATGGCTTCCTCTGCGACATG
TCGAACTCTCGTCTTGAAGCCAGCGGTGATTGGTTCACTACGCAACATTT
TCCGACTGGTTTCCACTGCAAACAAATGTGGTTGCGAGATCGTTTTCAGC
TCTGTTTTCGAAAGTGGGATTGGAACTGCTTGGACTTCTGTACTTGCCAG
CGTGTTAGGCAGTAGTCAACAACATCACGGCTTGGGAACTTATAAGCACC
TACTGAGCGATGTGACAGTGCCATCTTTTGATGAAGCGGTTGGCCAAGGA
GATGGACGAATATCGAGCAAAAAGTGCGAGCAATTCCTAGCTCAAGCTGC
AGAAACGATCTTCAACAAGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:224777..226198-

>Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004442_pilon:224777..226198- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCTACTTCAGGGCCTATACGAGATCCTGTTCTTTACTTTTACGG
AACATGTGATAGAAAGTATGCAGCGATGGCAGTGCAATTGCAGAAGCTTA
GTTTAAACTTTCGATGCATCCCTATCCAGGGTGCCGGTCACAATATACTT
TTGGATTCACCAAATGCATTACTGAAAAACATCGAAGATTTTCTAAAGAA
TAGAAGCCATTCTTCATCGGAATTCTTCACCATTTTAAGTACTGTGAAAT
TCGAAGCATATTCGATTCCTCTGACAAAACCAATGGTGGTGGGAGGGCGT
AAAGTTGCGAGAAGAGAAGGATTAGTTGTCTCTTTAGTGGCCAACAACAA
TTGTATGGGCGTGGGAGACGTGTGCCCACTTCCTGGTCTACATCACGAAG
ATATCCGTCGTTGTGTAGAAGAGGTTCGGGATCTGTCTTCTAAGCTTCAT
GCACTTTCCAATCCTTTCAAACTTACTTCAAATCAAGACTTGCTTGAGTT
TTTCGATTTCGTTAAGAGCTACTCCCCAGTTTCAAGGAATGGTTTCGAAG
CTGCGTTTGTTCAACTCCTTAGTCAAGCGCTCGGCCAGTCTTGTTCCGCA
ACTATTACTTCTTGCGCCTCGCATTTTTTGAACAAGGACTTGACAACTTC
GGATTTTGTCAACATTAATGGAGTTCTACCGCGAACATCAAACAGCACTG
TTCCACCCGTTGCTTCACCTTCTGACTCGCAACATCGTGAGTCTATGAAT
GTCTCACCATTCGAAGTAGTGAAGTTGAAAGTTGGTGCTTGCGAAAATAT
AGAAGACGAAATCCAAACCGTCCGAAAAGCAGTTTCTGCCGCAATAAGCA
GTGGAAAACGGATACGGCTTGATGCCAATCGAGCATGGACCCCGTCACAG
TACGAACAATTCGAAACTCAGTTGACAGAATTTGCTGAATGGATTGACTA
CATTGAGGAACCGCTTAGCACACCAGAACAATTGCACCAATTCATTGTAG
CCCCGCTTGGACAATCTGCTACAATTCCTCTGGCTTTAGATGAGTCGATT
AGTGATTGCTCACTTGAAATGATTCAAGACATGGCTTCCTCTGCGACATG
TCGAACTCTCGTCTTGAAGCCAGCGGTGATTGGTTCACTACGCAACATTT
TCCGACTGGTTTCCACTGCAAACAAATGTGGTTGCGAGATCGTTTTCAGC
TCTGTTTTCGAAAGTGGGATTGGAACTGCTTGGACTTCTGTACTTGCCAG
CGTGTTAGGCAGTAGTCAACAACATCACGGCTTGGGAACTTATAAGCACC
TACTGAGCGATGTGACAGTGCCATCTTTTGATGAAGCGGTTGGCCAAGGA
GATGGACGAATATCGAGCAAAAAGTGCGAGCAATTCCTAGCTCAAGCTGC
AGAAACGATCTTCAACAAGTAA
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