|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 7719.XP_002127184.1 |
Preferred name | EXOSC7 |
PFAMs | RNase_PH,RNase_PH_C |
Max annot lvl | 33208|Metazoa |
KEGG ko | ko:K12589 |
KEGG Pathway | ko03018,map03018 |
KEGG Module | M00390,M00391 |
GOs | GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354 |
Evalue | 1.15e-57 |
EggNOG OGs | COG2123@1|root,KOG1612@2759|Eukaryota,39T86@33154|Opisthokonta,3BEA9@33208|Metazoa,3CVBQ@33213|Bilateria,4875C@7711|Chordata |
Description | U1 snRNA 3'-end processing |
COG category | J |
BRITE | ko00000,ko00001,ko00002,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10001.t1 ID=Gchil10001.t1|Name=Gchil10001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp MQILSEAEGKYIRTGAKDGVRSDGRAMLDIRPVTLETAVLPTASGSARVR IGKVTDILVGIKPEVTEPSQQSPDEGIISFTVECSSLASPDFVGRGGADL SAELSQLLTRLYTSSATRELRKSLSIIEDKKCWILHVDALVLDSGGNLFG ALSLAVRAALRVVILPKVTVIPGEADDDDEIEVDEGEFSMPESAKDAPIA VTLASLGDRGVYMADCTSEEEACSKASITMGVSPLGKSSGAVLTGTGGID VDTLSSMLKDATVLGLDILQATDKFLALDMGSRLSGESVQPIGFFS* back to topspliced messenger RNA >Gchil10001.t1 ID=Gchil10001.t1|Name=Gchil10001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004442_pilon:218870..219760+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAAATCCTATCTGAGGCAGAAGGCAAATATATTCGAACCGGTGCAAA AGACGGAGTTCGCAGTGACGGTCGCGCCATGTTAGACATTCGCCCAGTTA CTCTAGAAACCGCCGTTTTGCCGACAGCATCTGGATCTGCTAGAGTGCGA ATCGGCAAGGTCACAGACATTCTGGTTGGTATTAAACCTGAAGTTACTGA ACCAAGTCAGCAGTCACCCGATGAGGGCATAATATCTTTCACCGTGGAGT GCAGTAGTTTGGCATCTCCAGATTTTGTTGGTCGAGGAGGAGCAGATCTT AGTGCTGAACTCAGCCAGCTTCTCACGCGTCTGTACACATCCTCAGCTAC CCGAGAACTGCGAAAATCGCTCTCCATCATTGAAGACAAGAAGTGCTGGA TATTGCATGTAGACGCACTGGTTCTTGATAGCGGTGGCAATCTATTCGGT GCCCTATCTCTCGCTGTGCGGGCTGCCCTACGGGTCGTAATTCTTCCTAA AGTGACTGTGATTCCGGGGGAAGCAGATGATGACGACGAGATAGAGGTCG ATGAAGGGGAGTTTAGCATGCCTGAGAGTGCAAAGGATGCCCCGATTGCT GTCACTCTAGCTTCCCTTGGAGACCGGGGTGTATACATGGCTGATTGCAC TTCTGAAGAAGAAGCGTGCTCCAAAGCTTCCATTACAATGGGCGTATCTC CGCTTGGGAAGTCTAGTGGCGCCGTGTTGACTGGTACGGGGGGTATAGAT GTTGATACACTGTCAAGTATGTTGAAAGACGCCACTGTGCTAGGCCTAGA TATTTTGCAGGCCACGGATAAGTTCTTGGCGCTAGACATGGGAAGCCGAC TATCCGGGGAATCAGTCCAACCAATTGGATTTTTTTCATGA back to topprotein sequence of Gchil10001.t1 >Gchil10001.t1 ID=Gchil10001.t1|Name=Gchil10001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MQILSEAEGKYIRTGAKDGVRSDGRAMLDIRPVTLETAVLPTASGSARVR IGKVTDILVGIKPEVTEPSQQSPDEGIISFTVECSSLASPDFVGRGGADL SAELSQLLTRLYTSSATRELRKSLSIIEDKKCWILHVDALVLDSGGNLFG ALSLAVRAALRVVILPKVTVIPGEADDDDEIEVDEGEFSMPESAKDAPIA VTLASLGDRGVYMADCTSEEEACSKASITMGVSPLGKSSGAVLTGTGGID VDTLSSMLKDATVLGLDILQATDKFLALDMGSRLSGESVQPIGFFS* back to topmRNA from alignment at tig00004442_pilon:218870..219760+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10001.t1 ID=Gchil10001.t1|Name=Gchil10001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004442_pilon:218870..219760+ (Gracilaria chilensis NLEC103_M9 male) ATGCAAATCCTATCTGAGGCAGAAGGCAAATATATTCGAACCGGTGCAAA
AGACGGAGTTCGCAGTGACGGTCGCGCCATGTTAGACATTCGCCCAGTTA
CTCTAGAAACCGCCGTTTTGCCGACAGCATCTGGATCTGCTAGAGTGCGA
ATCGGCAAGGTCACAGACATTCTGGTTGGTATTAAACCTGAAGTTACTGA
ACCAAGTCAGCAGTCACCCGATGAGGGCATAATATCTTTCACCGTGGAGT
GCAGTAGTTTGGCATCTCCAGATTTTGTTGGTCGAGGAGGAGCAGATCTT
AGTGCTGAACTCAGCCAGCTTCTCACGCGTCTGTACACATCCTCAGCTAC
CCGAGAACTGCGAAAATCGCTCTCCATCATTGAAGACAAGAAGTGCTGGA
TATTGCATGTAGACGCACTGGTTCTTGATAGCGGTGGCAATCTATTCGGT
GCCCTATCTCTCGCTGTGCGGGCTGCCCTACGGGTCGTAATTCTTCCTAA
AGTGACTGTGATTCCGGGGGAAGCAGATGATGACGACGAGATAGAGGTCG
ATGAAGGGGAGTTTAGCATGCCTGAGAGTGCAAAGGATGCCCCGATTGCT
GTCACTCTAGCTTCCCTTGGAGACCGGGGTGTATACATGGCTGATTGCAC
TTCTGAAGAAGAAGCGTGCTCCAAAGCTTCCATTACAATGGGCGTATCTC
CGCTTGGGAAGTCTAGTGGCGCCGTGTTGACTGGTACGGGGGGTATAGAT
GTTGATACACTGTCAAGTATGTTGAAAGACGCCACTGTGCTAGGCCTAGA
TATTTTGCAGGCCACGGATAAGTTCTTGGCGCTAGACATGGGAAGCCGAC
TATCCGGGGAATCAGTCCAACCAATTGGATTTTTTTCATGA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:218870..219760+ >Gchil10001.t1 ID=Gchil10001.t1|Name=Gchil10001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00004442_pilon:218870..219760+ (Gracilaria chilensis NLEC103_M9 male) ATGCAAATCCTATCTGAGGCAGAAGGCAAATATATTCGAACCGGTGCAAA AGACGGAGTTCGCAGTGACGGTCGCGCCATGTTAGACATTCGCCCAGTTA CTCTAGAAACCGCCGTTTTGCCGACAGCATCTGGATCTGCTAGAGTGCGA ATCGGCAAGGTCACAGACATTCTGGTTGGTATTAAACCTGAAGTTACTGA ACCAAGTCAGCAGTCACCCGATGAGGGCATAATATCTTTCACCGTGGAGT GCAGTAGTTTGGCATCTCCAGATTTTGTTGGTCGAGGAGGAGCAGATCTT AGTGCTGAACTCAGCCAGCTTCTCACGCGTCTGTACACATCCTCAGCTAC CCGAGAACTGCGAAAATCGCTCTCCATCATTGAAGACAAGAAGTGCTGGA TATTGCATGTAGACGCACTGGTTCTTGATAGCGGTGGCAATCTATTCGGT GCCCTATCTCTCGCTGTGCGGGCTGCCCTACGGGTCGTAATTCTTCCTAA AGTGACTGTGATTCCGGGGGAAGCAGATGATGACGACGAGATAGAGGTCG ATGAAGGGGAGTTTAGCATGCCTGAGAGTGCAAAGGATGCCCCGATTGCT GTCACTCTAGCTTCCCTTGGAGACCGGGGTGTATACATGGCTGATTGCAC TTCTGAAGAAGAAGCGTGCTCCAAAGCTTCCATTACAATGGGCGTATCTC CGCTTGGGAAGTCTAGTGGCGCCGTGTTGACTGGTACGGGGGGTATAGAT GTTGATACACTGTCAAGTATGTTGAAAGACGCCACTGTGCTAGGCCTAGA TATTTTGCAGGCCACGGATAAGTTCTTGGCGCTAGACATGGGAAGCCGAC TATCCGGGGAATCAGTCCAACCAATTGGATTTTTTTCATGA back to top
|