Gchil10000.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10000.t1
Unique NameGchil10000.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:217719..218255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS389CT
Preferred nameFAM210B
PFAMsDUF1279
Max annot lvl2759|Eukaryota
KEGG koko:K20815
GOsGO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010467,GO:0014070,GO:0016020,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0019867,GO:0031090,GO:0031224,GO:0031365,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032355,GO:0032870,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045646,GO:0045648,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051604,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071392,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0098588,GO:0098805,GO:1901564,GO:1901700,GO:1901701,GO:1903706,GO:1903708,GO:2000026
Evalue4.95e-30
EggNOG OGsKOG4526@1|root,KOG4526@2759|Eukaryota
DescriptionN-terminal peptidyl-methionine acetylation
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10000Gchil10000Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 217719..218255 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10000.t1.stop1Gchil10000.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 217719..217721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10000.t1.CDS1Gchil10000.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 217719..218255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10000.t1.exon1Gchil10000.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 217719..218255 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10000.t1.start1Gchil10000.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 218253..218255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10000.t1Gchil10000.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 217719..218255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10000.t1 ID=Gchil10000.t1|Name=Gchil10000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=179bp
MAFVSSYTLAGQRTTKAFNAAKCGYLGLARSRLLPPRRLQAVQFQTESPS
FTPYTTTCMASSNSTKPDAKELAKLYGGSYLATSVGLSIISYLVLYAMVA
VGVDVRTLMNTLGDFLATTPLGRPSVIDNISDTASTAALAYIAHKAMSPL
RFPLTVAATPVVAKLFSKNGSGSEETSS*
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spliced messenger RNA

>Gchil10000.t1 ID=Gchil10000.t1|Name=Gchil10000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00004442_pilon:217719..218255- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGTTAGCAGTTACACACTCGCCGGTCAAAGAACAACGAAAGC
TTTCAATGCGGCGAAATGTGGTTACTTGGGGCTGGCACGAAGTCGACTGC
TTCCTCCAAGGCGACTTCAGGCGGTTCAATTCCAGACAGAGTCTCCGAGC
TTTACGCCTTACACCACTACATGCATGGCTAGCAGCAATTCCACCAAACC
CGATGCAAAGGAACTGGCCAAGCTGTACGGTGGTTCTTATTTGGCCACCT
CCGTAGGCTTATCCATAATATCGTATCTCGTCTTATACGCCATGGTGGCA
GTTGGTGTAGATGTTAGAACGTTAATGAATACTTTAGGGGATTTCCTAGC
CACTACTCCGCTCGGAAGACCTTCTGTCATTGACAACATATCGGACACAG
CGAGCACGGCTGCGCTTGCATACATTGCCCACAAGGCCATGAGTCCGCTT
CGGTTCCCGCTTACGGTCGCAGCAACACCAGTGGTAGCCAAGCTTTTCTC
TAAGAACGGATCGGGATCAGAAGAAACATCTTCGTAA
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protein sequence of Gchil10000.t1

>Gchil10000.t1 ID=Gchil10000.t1|Name=Gchil10000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=179bp
MAFVSSYTLAGQRTTKAFNAAKCGYLGLARSRLLPPRRLQAVQFQTESPS
FTPYTTTCMASSNSTKPDAKELAKLYGGSYLATSVGLSIISYLVLYAMVA
VGVDVRTLMNTLGDFLATTPLGRPSVIDNISDTASTAALAYIAHKAMSPL
RFPLTVAATPVVAKLFSKNGSGSEETSS*
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mRNA from alignment at tig00004442_pilon:217719..218255-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10000.t1 ID=Gchil10000.t1|Name=Gchil10000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00004442_pilon:217719..218255- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTCGTTAGCAGTTACACACTCGCCGGTCAAAGAACAACGAAAGC
TTTCAATGCGGCGAAATGTGGTTACTTGGGGCTGGCACGAAGTCGACTGC
TTCCTCCAAGGCGACTTCAGGCGGTTCAATTCCAGACAGAGTCTCCGAGC
TTTACGCCTTACACCACTACATGCATGGCTAGCAGCAATTCCACCAAACC
CGATGCAAAGGAACTGGCCAAGCTGTACGGTGGTTCTTATTTGGCCACCT
CCGTAGGCTTATCCATAATATCGTATCTCGTCTTATACGCCATGGTGGCA
GTTGGTGTAGATGTTAGAACGTTAATGAATACTTTAGGGGATTTCCTAGC
CACTACTCCGCTCGGAAGACCTTCTGTCATTGACAACATATCGGACACAG
CGAGCACGGCTGCGCTTGCATACATTGCCCACAAGGCCATGAGTCCGCTT
CGGTTCCCGCTTACGGTCGCAGCAACACCAGTGGTAGCCAAGCTTTTCTC
TAAGAACGGATCGGGATCAGAAGAAACATCTTCGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:217719..218255-

>Gchil10000.t1 ID=Gchil10000.t1|Name=Gchil10000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00004442_pilon:217719..218255- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTCGTTAGCAGTTACACACTCGCCGGTCAAAGAACAACGAAAGC
TTTCAATGCGGCGAAATGTGGTTACTTGGGGCTGGCACGAAGTCGACTGC
TTCCTCCAAGGCGACTTCAGGCGGTTCAATTCCAGACAGAGTCTCCGAGC
TTTACGCCTTACACCACTACATGCATGGCTAGCAGCAATTCCACCAAACC
CGATGCAAAGGAACTGGCCAAGCTGTACGGTGGTTCTTATTTGGCCACCT
CCGTAGGCTTATCCATAATATCGTATCTCGTCTTATACGCCATGGTGGCA
GTTGGTGTAGATGTTAGAACGTTAATGAATACTTTAGGGGATTTCCTAGC
CACTACTCCGCTCGGAAGACCTTCTGTCATTGACAACATATCGGACACAG
CGAGCACGGCTGCGCTTGCATACATTGCCCACAAGGCCATGAGTCCGCTT
CGGTTCCCGCTTACGGTCGCAGCAACACCAGTGGTAGCCAAGCTTTTCTC
TAAGAACGGATCGGGATCAGAAGAAACATCTTCGTAA
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