Gcaud10048.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10048.t1
Unique Name	Gcaud10048.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	566

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_369_length_28483_cov_4.246936	contig	NODE_369_length_28483_cov_4.246936:18675..20372 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10048	Gcaud10048	Gracilaria caudata M_176_S67 male	gene	NODE_369_length_28483_cov_4.246936 18675..20372 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10048.t1.stop1	Gcaud10048.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_369_length_28483_cov_4.246936 18675..18677 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10048.t1.CDS1	Gcaud10048.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_369_length_28483_cov_4.246936 18675..20372 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10048.t1.exon1	Gcaud10048.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_369_length_28483_cov_4.246936 18675..20372 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10048.t1.start1	Gcaud10048.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_369_length_28483_cov_4.246936 20370..20372 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10048.t1	Gcaud10048.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_369_length_28483_cov_4.246936 18675..20372 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_369_length_28483_cov_4.246936:18675..20372-
coding sequence from alignment at NODE_369_length_28483_cov_4.246936:18675..20372-

mRNA sequence

>Gcaud10048.t1 ID=Gcaud10048.t1|Name=Gcaud10048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=566bp
MHLTLFPSARTATTACAALFAVLILIGLCRQSAAPLSLSVSVRGSRIVQK
NGVEGLVSPWTRWRDALSTALEIWGQGVSLKSSVRHALRSGPLSEAYVSV
LEKNVSDATKAFSQKLNQKRTGFVCQGDDCQVAVDGFATVGRVNYTFANY
EHTVNSVGVSNQVMVSCVCANPTCNSSVLVRPVSLDEKGTDGFCLFEKIN
GKFSDCGSELLRVSTNPQPHAVAEHPLNRPTSWNYSVANKRYTWQARGDR
SWIIPCTNSSGRYVREDVLTTWQQDPSCIRDNTNHSREIVGRRNERGFCA
PPANSNVQYVRDSNETRSSQCFQTYRFAISAASNRASQQDILATGRDEST
FVEEKPTLYYLSELLLFISPGVLALLFAISIFKDPYRLETVSKGSAAVVV
LMLLLTAAAEMVVLFVQLYWESFALRWKTSFAFVDAGIAWAESFNIPTID
GANAEYSVIVLTAVLGRAGVRRTWFWFVLGCAIVLTVLIAVIMVLTVFRL
RRMRHMKKSRQFGRPKQNEYVYRVLERIFPSDRYRAKRRCEVEDEEDLKA
PLTEDKSSATGAEGI*

spliced messenger RNA

>Gcaud10048.t1 ID=Gcaud10048.t1|Name=Gcaud10048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:18675..20372- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCTCACCCTCTTCCCTTCAGCGCGAACAGCCACCACTGCCTGCGC
CGCCTTATTCGCCGTGCTCATCTTAATTGGCTTGTGCCGCCAGTCAGCCG
CCCCTCTCTCTCTCTCCGTCTCCGTTCGTGGCAGTCGAATTGTCCAGAAA
AACGGAGTGGAAGGGCTCGTCTCGCCGTGGACCCGCTGGAGGGATGCTCT
GTCAACCGCTCTGGAGATTTGGGGTCAAGGCGTGTCGCTGAAGAGCAGTG
TGCGCCACGCCTTGCGAAGCGGACCGCTCTCCGAAGCCTACGTCTCCGTG
CTTGAGAAAAATGTCTCGGATGCCACCAAAGCCTTTTCTCAAAAGCTCAA
CCAAAAACGCACGGGCTTTGTCTGTCAGGGTGACGACTGTCAGGTCGCTG
TCGATGGCTTCGCAACCGTTGGTAGAGTCAACTACACCTTTGCAAATTAC
GAACACACAGTTAATTCCGTAGGGGTTTCCAACCAAGTTATGGTTTCCTG
CGTGTGTGCCAATCCCACCTGCAACTCGTCCGTCCTCGTTCGTCCAGTAT
CACTCGATGAAAAGGGAACAGACGGATTCTGTCTGTTTGAAAAAATCAAC
GGAAAGTTCTCAGACTGCGGATCCGAACTGCTCAGAGTTTCAACCAATCC
TCAACCACATGCGGTGGCCGAGCATCCATTAAACAGACCAACCAGTTGGA
ACTATTCCGTTGCCAACAAAAGATACACCTGGCAGGCTCGTGGCGACCGA
AGTTGGATCATACCCTGCACCAATTCCTCCGGACGGTATGTGCGTGAGGA
TGTGCTAACCACCTGGCAGCAAGACCCGTCTTGCATTAGAGACAACACAA
ATCATTCGCGGGAAATTGTGGGACGTCGAAATGAAAGAGGTTTTTGTGCG
CCTCCAGCCAACTCCAACGTGCAATATGTGCGTGATTCCAACGAAACAAG
GAGTAGTCAGTGCTTCCAAACGTATCGCTTTGCCATATCAGCCGCCTCTA
ATCGAGCTAGTCAACAGGATATTCTGGCCACGGGCAGGGATGAGTCCACA
TTCGTTGAAGAAAAGCCAACTCTATACTACCTGTCCGAATTGCTGTTATT
CATCTCGCCAGGTGTTCTTGCTCTCTTGTTCGCCATATCGATTTTTAAAG
ACCCGTATAGATTAGAAACGGTCTCAAAAGGCTCGGCTGCGGTCGTTGTG
CTGATGCTGCTGCTCACTGCGGCAGCTGAAATGGTAGTTCTTTTTGTGCA
GCTTTACTGGGAGAGTTTCGCACTCCGCTGGAAAACTTCTTTTGCGTTTG
TCGATGCCGGAATTGCCTGGGCAGAAAGTTTCAATATTCCAACCATCGAC
GGCGCCAACGCTGAATACAGTGTGATAGTGCTGACTGCCGTGTTGGGAAG
GGCGGGAGTAAGGAGGACCTGGTTCTGGTTCGTACTGGGCTGCGCAATCG
TGCTTACTGTGCTGATCGCGGTCATCATGGTTTTGACTGTGTTTCGACTT
CGTAGAATGCGCCACATGAAGAAAAGCAGGCAGTTTGGGCGTCCAAAGCA
GAATGAATACGTATACCGTGTCCTGGAGCGCATATTCCCATCTGATAGGT
ATCGGGCCAAAAGGAGGTGTGAAGTGGAAGACGAAGAGGATTTGAAAGCT
CCGCTTACCGAAGACAAAAGTAGTGCAACTGGCGCGGAAGGCATTTAG

protein sequence of Gcaud10048.t1

>Gcaud10048.t1 ID=Gcaud10048.t1|Name=Gcaud10048.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MHLTLFPSARTATTACAALFAVLILIGLCRQSAAPLSLSVSVRGSRIVQK
NGVEGLVSPWTRWRDALSTALEIWGQGVSLKSSVRHALRSGPLSEAYVSV
LEKNVSDATKAFSQKLNQKRTGFVCQGDDCQVAVDGFATVGRVNYTFANY
EHTVNSVGVSNQVMVSCVCANPTCNSSVLVRPVSLDEKGTDGFCLFEKIN
GKFSDCGSELLRVSTNPQPHAVAEHPLNRPTSWNYSVANKRYTWQARGDR
SWIIPCTNSSGRYVREDVLTTWQQDPSCIRDNTNHSREIVGRRNERGFCA
PPANSNVQYVRDSNETRSSQCFQTYRFAISAASNRASQQDILATGRDEST
FVEEKPTLYYLSELLLFISPGVLALLFAISIFKDPYRLETVSKGSAAVVV
LMLLLTAAAEMVVLFVQLYWESFALRWKTSFAFVDAGIAWAESFNIPTID
GANAEYSVIVLTAVLGRAGVRRTWFWFVLGCAIVLTVLIAVIMVLTVFRL
RRMRHMKKSRQFGRPKQNEYVYRVLERIFPSDRYRAKRRCEVEDEEDLKA
PLTEDKSSATGAEGI*

mRNA from alignment at NODE_369_length_28483_cov_4.246936:18675..20372-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10048.t1 ID=Gcaud10048.t1|Name=Gcaud10048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1698bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:18675..20372- (Gracilaria caudata M_176_S67 male)
ATGCATCTCACCCTCTTCCCTTCAGCGCGAACAGCCACCACTGCCTGCGC
CGCCTTATTCGCCGTGCTCATCTTAATTGGCTTGTGCCGCCAGTCAGCCG
CCCCTCTCTCTCTCTCCGTCTCCGTTCGTGGCAGTCGAATTGTCCAGAAA
AACGGAGTGGAAGGGCTCGTCTCGCCGTGGACCCGCTGGAGGGATGCTCT
GTCAACCGCTCTGGAGATTTGGGGTCAAGGCGTGTCGCTGAAGAGCAGTG
TGCGCCACGCCTTGCGAAGCGGACCGCTCTCCGAAGCCTACGTCTCCGTG
CTTGAGAAAAATGTCTCGGATGCCACCAAAGCCTTTTCTCAAAAGCTCAA
CCAAAAACGCACGGGCTTTGTCTGTCAGGGTGACGACTGTCAGGTCGCTG
TCGATGGCTTCGCAACCGTTGGTAGAGTCAACTACACCTTTGCAAATTAC
GAACACACAGTTAATTCCGTAGGGGTTTCCAACCAAGTTATGGTTTCCTG
CGTGTGTGCCAATCCCACCTGCAACTCGTCCGTCCTCGTTCGTCCAGTAT
CACTCGATGAAAAGGGAACAGACGGATTCTGTCTGTTTGAAAAAATCAAC
GGAAAGTTCTCAGACTGCGGATCCGAACTGCTCAGAGTTTCAACCAATCC
TCAACCACATGCGGTGGCCGAGCATCCATTAAACAGACCAACCAGTTGGA
ACTATTCCGTTGCCAACAAAAGATACACCTGGCAGGCTCGTGGCGACCGA
AGTTGGATCATACCCTGCACCAATTCCTCCGGACGGTATGTGCGTGAGGA
TGTGCTAACCACCTGGCAGCAAGACCCGTCTTGCATTAGAGACAACACAA
ATCATTCGCGGGAAATTGTGGGACGTCGAAATGAAAGAGGTTTTTGTGCG
CCTCCAGCCAACTCCAACGTGCAATATGTGCGTGATTCCAACGAAACAAG
GAGTAGTCAGTGCTTCCAAACGTATCGCTTTGCCATATCAGCCGCCTCTA
ATCGAGCTAGTCAACAGGATATTCTGGCCACGGGCAGGGATGAGTCCACA
TTCGTTGAAGAAAAGCCAACTCTATACTACCTGTCCGAATTGCTGTTATT
CATCTCGCCAGGTGTTCTTGCTCTCTTGTTCGCCATATCGATTTTTAAAG
ACCCGTATAGATTAGAAACGGTCTCAAAAGGCTCGGCTGCGGTCGTTGTG
CTGATGCTGCTGCTCACTGCGGCAGCTGAAATGGTAGTTCTTTTTGTGCA
GCTTTACTGGGAGAGTTTCGCACTCCGCTGGAAAACTTCTTTTGCGTTTG
TCGATGCCGGAATTGCCTGGGCAGAAAGTTTCAATATTCCAACCATCGAC
GGCGCCAACGCTGAATACAGTGTGATAGTGCTGACTGCCGTGTTGGGAAG
GGCGGGAGTAAGGAGGACCTGGTTCTGGTTCGTACTGGGCTGCGCAATCG
TGCTTACTGTGCTGATCGCGGTCATCATGGTTTTGACTGTGTTTCGACTT
CGTAGAATGCGCCACATGAAGAAAAGCAGGCAGTTTGGGCGTCCAAAGCA
GAATGAATACGTATACCGTGTCCTGGAGCGCATATTCCCATCTGATAGGT
ATCGGGCCAAAAGGAGGTGTGAAGTGGAAGACGAAGAGGATTTGAAAGCT
CCGCTTACCGAAGACAAAAGTAGTGCAACTGGCGCGGAAGGCATTTAG

Coding sequence (CDS) from alignment at NODE_369_length_28483_cov_4.246936:18675..20372-

>Gcaud10048.t1 ID=Gcaud10048.t1|Name=Gcaud10048.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1698bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:18675..20372- (Gracilaria caudata M_176_S67 male)
ATGCATCTCACCCTCTTCCCTTCAGCGCGAACAGCCACCACTGCCTGCGC
CGCCTTATTCGCCGTGCTCATCTTAATTGGCTTGTGCCGCCAGTCAGCCG
CCCCTCTCTCTCTCTCCGTCTCCGTTCGTGGCAGTCGAATTGTCCAGAAA
AACGGAGTGGAAGGGCTCGTCTCGCCGTGGACCCGCTGGAGGGATGCTCT
GTCAACCGCTCTGGAGATTTGGGGTCAAGGCGTGTCGCTGAAGAGCAGTG
TGCGCCACGCCTTGCGAAGCGGACCGCTCTCCGAAGCCTACGTCTCCGTG
CTTGAGAAAAATGTCTCGGATGCCACCAAAGCCTTTTCTCAAAAGCTCAA
CCAAAAACGCACGGGCTTTGTCTGTCAGGGTGACGACTGTCAGGTCGCTG
TCGATGGCTTCGCAACCGTTGGTAGAGTCAACTACACCTTTGCAAATTAC
GAACACACAGTTAATTCCGTAGGGGTTTCCAACCAAGTTATGGTTTCCTG
CGTGTGTGCCAATCCCACCTGCAACTCGTCCGTCCTCGTTCGTCCAGTAT
CACTCGATGAAAAGGGAACAGACGGATTCTGTCTGTTTGAAAAAATCAAC
GGAAAGTTCTCAGACTGCGGATCCGAACTGCTCAGAGTTTCAACCAATCC
TCAACCACATGCGGTGGCCGAGCATCCATTAAACAGACCAACCAGTTGGA
ACTATTCCGTTGCCAACAAAAGATACACCTGGCAGGCTCGTGGCGACCGA
AGTTGGATCATACCCTGCACCAATTCCTCCGGACGGTATGTGCGTGAGGA
TGTGCTAACCACCTGGCAGCAAGACCCGTCTTGCATTAGAGACAACACAA
ATCATTCGCGGGAAATTGTGGGACGTCGAAATGAAAGAGGTTTTTGTGCG
CCTCCAGCCAACTCCAACGTGCAATATGTGCGTGATTCCAACGAAACAAG
GAGTAGTCAGTGCTTCCAAACGTATCGCTTTGCCATATCAGCCGCCTCTA
ATCGAGCTAGTCAACAGGATATTCTGGCCACGGGCAGGGATGAGTCCACA
TTCGTTGAAGAAAAGCCAACTCTATACTACCTGTCCGAATTGCTGTTATT
CATCTCGCCAGGTGTTCTTGCTCTCTTGTTCGCCATATCGATTTTTAAAG
ACCCGTATAGATTAGAAACGGTCTCAAAAGGCTCGGCTGCGGTCGTTGTG
CTGATGCTGCTGCTCACTGCGGCAGCTGAAATGGTAGTTCTTTTTGTGCA
GCTTTACTGGGAGAGTTTCGCACTCCGCTGGAAAACTTCTTTTGCGTTTG
TCGATGCCGGAATTGCCTGGGCAGAAAGTTTCAATATTCCAACCATCGAC
GGCGCCAACGCTGAATACAGTGTGATAGTGCTGACTGCCGTGTTGGGAAG
GGCGGGAGTAAGGAGGACCTGGTTCTGGTTCGTACTGGGCTGCGCAATCG
TGCTTACTGTGCTGATCGCGGTCATCATGGTTTTGACTGTGTTTCGACTT
CGTAGAATGCGCCACATGAAGAAAAGCAGGCAGTTTGGGCGTCCAAAGCA
GAATGAATACGTATACCGTGTCCTGGAGCGCATATTCCCATCTGATAGGT
ATCGGGCCAAAAGGAGGTGTGAAGTGGAAGACGAAGAGGATTTGAAAGCT
CCGCTTACCGAAGACAAAAGTAGTGCAACTGGCGCGGAAGGCATTTAG