Gcaud10048.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud10048.t1
Unique NameGcaud10048.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length566
Homology
BLAST of Gcaud10048.t1 vs. uniprot
Match: R7QFH7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFH7_CHOCR)

HSP 1 Score: 187 bits (474), Expect = 3.070e-48
Identity = 143/460 (31.09%), Postives = 212/460 (46.09%), Query Frame = 0
Query:   36 LSLSVSVRGSRIVQKNGVE-----GLVSPWTRWRDALSTALEIWGQGVSLKSSVRHALRSGPLSEAYVSVLEKNVSDATKAFSQKLNQKRTGFVCQGDDCQVAVDGFATVGRVNYTFANYEHTVNSVGVSNQVMVSCVCA-----NPTCNSSVLVRPVSLDEKGTDG--------FCLFEKINGKFSDCGSELLRVSTNPQPHAVA--EHPLN------RPTSWNYSVANKRYTWQARGDRSWIIPCTNSSGRYVREDVLTTWQQDPSCIRDNTNHSREIVGRRNERGFCAPPANSNVQYVRDSNETRSSQCFQTYRFAISAASNRASQQDILATGRDESTFVEEKPTLYYLSELLLFISPGVLALLFAISIFKDPYRLETVSKGSA--AVXXXXXXXXXXXEMVVLFVQLYWESFALRWKTSFAFVDAGIAWAESFNIPTIDGANAEYSVIVLTAVLGR 467
            LSL V      +VQ   V+     G + P  R +D++ TA ++W  G   +     A R+GP+S  Y + L  N S     FS             G  C+VA++GF TVG V YTF N     N  G S QVMV+C C      +  C  ++LVRP++L   G DG         C++E +  KFSDC SEL+R+ST P         HPLN       P S +Y        W+A G R W   C  +    + E  ++  +++     ++T  +        + G+C PP    VQY RD  E    +C + Y FA  ++++ A+QQD +A G+D  T++ EK  L   +EL L +S   L +LFA S+++   + +   +      V           E + L + L  E     W + FAF+DA I  A  F   T    +A  S++V+TAV+G 
Sbjct:   17 LSLCVDTARPPLVQTKNVDPVGPTGTLDPLRRLQDSVGTATQVWANGPMEEHRTIAASRTGPMSAVYRAALASNASQECNPFS-------------GHQCEVAINGFGTVGEVQYTFNNSRE--NLQGNSTQVMVACRCIGQGKNSAECGVALLVRPITLTRVGADGEREETGRHVCIYEAVGEKFSDCHSELVRLSTRPAGTKPEYWRHPLNFTYEVPDPISGDY--------WRADGQRGWTHDCEEAEFDALPEYNISNLRREDLRFNNHTTPA-------GKGGYCRPP--EGVQYYRDVAEGSDDECAELYDFAAPSSAHIATQQDEIAVGQDPHTYISEKTPLTSYTELALSVSAACLGVLFAWSMYRKIMKKKNAEQPVKYFLVGLLKQVMSYALEALPLHIALAHEVGCRHWWSQFAFMDATITLAHGF---TGAQGSARDSMLVITAVMGE 441          
BLAST of Gcaud10048.t1 vs. uniprot
Match: R7QCE4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCE4_CHOCR)

HSP 1 Score: 123 bits (308), Expect = 7.200e-27
Identity = 105/331 (31.72%), Postives = 146/331 (44.11%), Query Frame = 0
Query:  164 MVSCVCANP-----TCNSSVLVRPVSLDEKGTDG--------FCLFEKINGKFSDCGSELLRVSTNP---QPHAVAEHPLNRPTSWNYSVANKRYT--WQARGDRSWIIPCTNSSGRYVREDVLTTWQQDPSCIRDNTNHSREIVGRRNERGFCAPPANSNVQYVRDSNETRSSQCFQTYRFAISAASNRASQQDILATGRDESTFVEEKPTLYYLSELLLFISPGVLALLFAISIFK---------DPYRLETVSKGSAAVXXXXXXXXXXXEMVVLFVQLYWESFALRWKTSFAFVDAGIAWAESFNIPTIDGANAEYSVIVLTAVLGR 467
            MV+C C         C  ++LVRP++L   G DG         C++E +  KFSDC SEL+R+ST P   +P     HP N    + Y V ++     W+A G R W+  C  +       D L  +        D   H       +   G+C PP    VQY RD  E    +C   Y FA  AASNR +QQD +A G D ST++ EK  L   +E+ L +S   L LL A S+ K          P +   VS                 E + L + L  E     W++ FAF+DA +  A  F        +A+ S++VLTAV+G 
Sbjct:    1 MVACRCIGQGEDSNECGVALLVRPITLTRVGADGEREETGRHVCIYEAVGEKFSDCHSELVRLSTRPAGTKPE-YGRHPYN----FTYKVPDRISGDYWRADGQRGWMHDCGEAEF-----DALPKYNISGLRRGDLRFHKHTTPAEKG--GYCRPP--EGVQYYRDEAEGSDDECAALYDFAAPAASNRGTQQDEIAIGMDLSTYLAEKIPLTTYTEIALSLSAACLGLLLAWSMHKKIITNMNAEQPIKYFLVS-------LLKLVLSYALEALPLHIALAEEVRCRDWRSLFAFMDASVTLAHGFKGSR---GSAKDSLLVLTAVVGE 307          
The following BLAST results are available for this feature:
BLAST of Gcaud10048.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QFH7_CHOCR3.070e-4831.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QCE4_CHOCR7.200e-2731.72Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 474..498
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 394..420
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 421..473
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 499..565
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 383..393
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 358..382
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..357
NoneNo IPR availableTMHMMTMhelixcoord: 394..416
NoneNo IPR availableTMHMMTMhelixcoord: 476..498
NoneNo IPR availableTMHMMTMhelixcoord: 359..381

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_369_length_28483_cov_4.246936contigNODE_369_length_28483_cov_4.246936:18675..20372 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10048.t1Gcaud10048.t1Gracilaria caudata M_176_S67 malemRNANODE_369_length_28483_cov_4.246936 18675..20372 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud10048.t1 ID=Gcaud10048.t1|Name=Gcaud10048.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MHLTLFPSARTATTACAALFAVLILIGLCRQSAAPLSLSVSVRGSRIVQK
NGVEGLVSPWTRWRDALSTALEIWGQGVSLKSSVRHALRSGPLSEAYVSV
LEKNVSDATKAFSQKLNQKRTGFVCQGDDCQVAVDGFATVGRVNYTFANY
EHTVNSVGVSNQVMVSCVCANPTCNSSVLVRPVSLDEKGTDGFCLFEKIN
GKFSDCGSELLRVSTNPQPHAVAEHPLNRPTSWNYSVANKRYTWQARGDR
SWIIPCTNSSGRYVREDVLTTWQQDPSCIRDNTNHSREIVGRRNERGFCA
PPANSNVQYVRDSNETRSSQCFQTYRFAISAASNRASQQDILATGRDEST
FVEEKPTLYYLSELLLFISPGVLALLFAISIFKDPYRLETVSKGSAAVVV
LMLLLTAAAEMVVLFVQLYWESFALRWKTSFAFVDAGIAWAESFNIPTID
GANAEYSVIVLTAVLGRAGVRRTWFWFVLGCAIVLTVLIAVIMVLTVFRL
RRMRHMKKSRQFGRPKQNEYVYRVLERIFPSDRYRAKRRCEVEDEEDLKA
PLTEDKSSATGAEGI*
back to top