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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMC011CT |
| Preferred name | ABCD3 |
| PFAMs | ABC_membrane_2,ABC_tran |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K05677 |
| KEGG TC | 3.A.1.203.1 |
| KEGG Pathway | ko02010,ko04146,map02010,map04146 |
| GOs | GO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351 |
| Evalue | 1.86e-227 |
| EggNOG OGs | COG4178@1|root,KOG0060@2759|Eukaryota |
| Description | ATP-binding cassette sub-family D |
| COG category | G |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud181.t1.start1 | Gcaud181.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_3675_length_3094_cov_3.173493 810..812 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud181.t1.stop1 | Gcaud181.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_3675_length_3094_cov_3.173493 2910..2912 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=701bp MTNALSVLARQPRAALAAAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPH AHSALPQPSSSPPPARVDLRFVKTVASFLRVAIRAPPSQEASVLALVALL LAARSWLDLWASSNGGHVVKAIVARDRRSFIRRAIVDIATMMFPMSFVNN SLRYSIARLKLLMRRRLSLYLHDKYLANNTFYKLSNLDARIRNVDQMLTV DIDRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMILYFAACS VVLRAIQPPFGQLAAEEQRLEGEYRLHHSRLITHSEEIAFFGGAAREKLY INHSFDNLVAHLNKLFAARWRNGFVDAVLVKYVATIVGYLVVSLPVFFTE SPVFRLFSSANSARHNAANANAETTSASNIAGLYTRNSRLLLQLAGAIGR LVLAGKEVTRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHL AHLMRPGKLVVADEDDRESSVRFEAVNIVSPDGTVLCEGRSLEMERGSHV LTTGPNGCGKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLALGTL RENVTYPMTWGEARARGATDELIMQLLERVHLGDVARRRDGLDAVKDWAE VLSGGQKQRLAFARLLFHAPQYAILDEASSAVSIDVEKALYEAVKEAGIT VISVSHRPSLWEFHDRVLAFDGGGGYEFREIGDEDLRAVDSGAVGSAAER * back to topspliced messenger RNA >Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACTAACGCGCTCTCCGTGCTTGCGCGCCAGCCGCGCGCCGCTCTGGC CGCCGCCGCCGCCGTCGCCGCCACCACCGGCGTGCTGGCGCACAAGTGGA ACGCCGCCGTGCACAGCAAGCGTCTTGACTCTGCCATCTACCGCCCCCAC GCGCACTCCGCGCTGCCGCAGCCGTCGTCGTCGCCGCCGCCGGCGCGCGT CGACCTGCGCTTCGTCAAGACTGTCGCTTCCTTTCTGCGCGTCGCCATCC GTGCGCCGCCGTCGCAGGAGGCGTCCGTGCTAGCGCTCGTGGCGCTGCTG TTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCTAGTTCCAATGGGGGACA CGTCGTCAAGGCCATCGTTGCGCGTGACAGGCGCAGCTTCATCCGACGCG CTATTGTGGACATTGCCACAATGATGTTCCCTATGTCGTTTGTCAACAAT TCGTTGCGCTACTCTATAGCGCGCCTCAAGCTGCTCATGCGTCGTCGTCT GTCGCTCTACTTGCATGACAAGTACCTGGCCAACAACACTTTCTATAAGC TGTCCAACCTCGACGCCCGCATTCGCAACGTCGACCAGATGCTCACTGTC GATATTGACCGCCTGTGTTCTTCGCTGGTCGACCTGTACTGCAACATATC CAAGCCTGTCTTCGACATTGTTCTGTTCAGTCGCCGCCTGGCTCGCAGTC TGGGCCCCTCGGGCCCGCTCTGCATGATCCTGTATTTTGCAGCGTGCTCC GTCGTTCTGCGCGCCATTCAGCCGCCGTTTGGACAGCTCGCAGCCGAGGA GCAGCGTCTGGAAGGCGAGTACCGTTTGCACCACTCACGCCTTATTACCC ATTCTGAGGAAATTGCCTTCTTTGGGGGCGCCGCCCGGGAGAAATTGTAC ATCAACCACTCGTTCGATAACCTGGTGGCTCACCTAAACAAGCTTTTCGC CGCGCGCTGGCGCAACGGCTTCGTGGACGCCGTTCTGGTCAAGTACGTCG CTACCATTGTCGGATACCTCGTGGTTTCACTGCCAGTGTTCTTCACAGAG TCGCCAGTGTTCCGACTGTTCTCGTCCGCAAATAGCGCGCGTCACAACGC CGCCAACGCGAACGCAGAGACCACATCAGCGTCCAACATTGCCGGGCTGT ACACCAGGAACTCTCGCCTGTTGCTGCAGTTGGCAGGAGCCATTGGAAGG CTGGTGCTCGCTGGAAAGGAGGTGACTCGTCTCACCGGATACACGCATCG CGTCTCTCGGCTGGAGCACGTGCTCGACGAGCTGTGTCGTGCGGGAGCAG TGCGACGACGGTTCGAATCGTCATCCGATTTGTTACATGATGCGCATTTG GCGCATCTAATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGACAG GGAGAGTAGTGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCA CGGTTTTGTGCGAAGGGCGTTCGTTGGAGATGGAGCGCGGCAGTCACGTG CTCACGACTgggcccaatgggtgcggaaagagctcgttattccgcgttct ggcgggattgtggccggtgtatggcggcacgatctaccgtccggctcgct ctcgtatcttctacgtgccgcaacggccgtaTCTAGCGTTAGGGACGTTG CGCGAGAACGTGACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGG CGCGACGGATGAGCTGATCATGCAGTTGTTGGAGAGAGTGCATCTGGGAG ACGTGGCGCGACGACGGGATGGACTGGACGCGGTGAAGGACTGGGCGGAG GTTTTGAGCGGCGGCCAGAAACAGCGGCTGGCGTTTGCGAGGCTGCTGTT CCATGCGCCGCAGTACGCCATTCTTGACGAGGCGTCGTCGGCGGTTTCAA TTGACGTGGAGAAGGCGCTGTACGAGGCGGTGAAGGAGGCGGGCATTACG GTGATCAGCGTGAGCCACCGGCCGAGTCTTTGGGAATTCCATGACCGCGT GCTGGCGTTTGACGGGGGTGGCGGGTATGAGTTCCGCGAGATCGGCGACG AGGACCTGCGCGCGGTGGACTCTGGCGCGGTGGGGTCGGCGGCCGAAAGA TAA back to topprotein sequence of Gcaud181.t1 >Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=701bp
MTNALSVLARQPRAALAAAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPH AHSALPQPSSSPPPARVDLRFVKTVASFLRVAIRAPPSQEASVLALVALL LAARSWLDLWASSNGGHVVKAIVARDRRSFIRRAIVDIATMMFPMSFVNN SLRYSIARLKLLMRRRLSLYLHDKYLANNTFYKLSNLDARIRNVDQMLTV DIDRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMILYFAACS VVLRAIQPPFGQLAAEEQRLEGEYRLHHSRLITHSEEIAFFGGAAREKLY INHSFDNLVAHLNKLFAARWRNGFVDAVLVKYVATIVGYLVVSLPVFFTE SPVFRLFSSANSARHNAANANAETTSASNIAGLYTRNSRLLLQLAGAIGR LVLAGKEVTRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHL AHLMRPGKLVVADEDDRESSVRFEAVNIVSPDGTVLCEGRSLEMERGSHV LTTGPNGCGKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLALGTL RENVTYPMTWGEARARGATDELIMQLLERVHLGDVARRRDGLDAVKDWAE VLSGGQKQRLAFARLLFHAPQYAILDEASSAVSIDVEKALYEAVKEAGIT VISVSHRPSLWEFHDRVLAFDGGGGYEFREIGDEDLRAVDSGAVGSAAER * back to topmRNA from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ (Gracilaria caudata M_176_S67 male) ATGACTAACGCGCTCTCCGTGCTTGCGCGCCAGCCGCGCGCCGCTCTGGC
CGCCGCCGCCGCCGTCGCCGCCACCACCGGCGTGCTGGCGCACAAGTGGA
ACGCCGCCGTGCACAGCAAGCGTCTTGACTCTGCCATCTACCGCCCCCAC
GCGCACTCCGCGCTGCCGCAGCCGTCGTCGTCGCCGCCGCCGGCGCGCGT
CGACCTGCGCTTCGTCAAGACTGTCGCTTCCTTTCTGCGCGTCGCCATCC
GTGCGCCGCCGTCGCAGGAGGCGTCCGTGCTAGCGCTCGTGGCGCTGCTG
TTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCTAGTTCCAATGGGGGACA
CGTCGTCAAGGCCATCGTTGCGCGTGACAGGCGCAGCTTCATCCGACGCG
CTATTGTGGACATTGCCACAATGATGTTCCCTATGTCGTTTGTCAACAAT
TCGTTGCGCTACTCTATAGCGCGCCTCAAGCTGCTCATGCGTCGTCGTCT
GTCGCTCTACTTGCATGACAAGTACCTGGCCAACAACACTTTCTATAAGC
TGTCCAACCTCGACGCCCGCATTCGCAACGTCGACCAGATGCTCACTGTC
GATATTGACCGCCTGTGTTCTTCGCTGGTCGACCTGTACTGCAACATATC
CAAGCCTGTCTTCGACATTGTTCTGTTCAGTCGCCGCCTGGCTCGCAGTC
TGGGCCCCTCGGGCCCGCTCTGCATGATCCTGTATTTTGCAGCGTGCTCC
GTCGTTCTGCGCGCCATTCAGCCGCCGTTTGGACAGCTCGCAGCCGAGGA
GCAGCGTCTGGAAGGCGAGTACCGTTTGCACCACTCACGCCTTATTACCC
ATTCTGAGGAAATTGCCTTCTTTGGGGGCGCCGCCCGGGAGAAATTGTAC
ATCAACCACTCGTTCGATAACCTGGTGGCTCACCTAAACAAGCTTTTCGC
CGCGCGCTGGCGCAACGGCTTCGTGGACGCCGTTCTGGTCAAGTACGTCG
CTACCATTGTCGGATACCTCGTGGTTTCACTGCCAGTGTTCTTCACAGAG
TCGCCAGTGTTCCGACTGTTCTCGTCCGCAAATAGCGCGCGTCACAACGC
CGCCAACGCGAACGCAGAGACCACATCAGCGTCCAACATTGCCGGGCTGT
ACACCAGGAACTCTCGCCTGTTGCTGCAGTTGGCAGGAGCCATTGGAAGG
CTGGTGCTCGCTGGAAAGGAGGTGACTCGTCTCACCGGATACACGCATCG
CGTCTCTCGGCTGGAGCACGTGCTCGACGAGCTGTGTCGTGCGGGAGCAG
TGCGACGACGGTTCGAATCGTCATCCGATTTGTTACATGATGCGCATTTG
GCGCATCTAATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGACAG
GGAGAGTAGTGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCA
CGGTTTTGTGCGAAGGGCGTTCGTTGGAGATGGAGCGCGGCAGTCACGTG
CTCACGACTgggcccaatgggtgcggaaagagctcgttattccgcgttct
ggcgggattgtggccggtgtatggcggcacgatctaccgtccggctcgct
ctcgtatcttctacgtgccgcaacggccgtaTCTAGCGTTAGGGACGTTG
CGCGAGAACGTGACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGG
CGCGACGGATGAGCTGATCATGCAGTTGTTGGAGAGAGTGCATCTGGGAG
ACGTGGCGCGACGACGGGATGGACTGGACGCGGTGAAGGACTGGGCGGAG
GTTTTGAGCGGCGGCCAGAAACAGCGGCTGGCGTTTGCGAGGCTGCTGTT
CCATGCGCCGCAGTACGCCATTCTTGACGAGGCGTCGTCGGCGGTTTCAA
TTGACGTGGAGAAGGCGCTGTACGAGGCGGTGAAGGAGGCGGGCATTACG
GTGATCAGCGTGAGCCACCGGCCGAGTCTTTGGGAATTCCATGACCGCGT
GCTGGCGTTTGACGGGGGTGGCGGGTATGAGTTCCGCGAGATCGGCGACG
AGGACCTGCGCGCGGTGGACTCTGGCGCGGTGGGGTCGGCGGCCGAAAGA
TAA back to topCoding sequence (CDS) from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ >Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2103bp|location=Sequence derived from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ (Gracilaria caudata M_176_S67 male) ATGACTAACGCGCTCTCCGTGCTTGCGCGCCAGCCGCGCGCCGCTCTGGC CGCCGCCGCCGCCGTCGCCGCCACCACCGGCGTGCTGGCGCACAAGTGGA ACGCCGCCGTGCACAGCAAGCGTCTTGACTCTGCCATCTACCGCCCCCAC GCGCACTCCGCGCTGCCGCAGCCGTCGTCGTCGCCGCCGCCGGCGCGCGT CGACCTGCGCTTCGTCAAGACTGTCGCTTCCTTTCTGCGCGTCGCCATCC GTGCGCCGCCGTCGCAGGAGGCGTCCGTGCTAGCGCTCGTGGCGCTGCTG TTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCTAGTTCCAATGGGGGACA CGTCGTCAAGGCCATCGTTGCGCGTGACAGGCGCAGCTTCATCCGACGCG CTATTGTGGACATTGCCACAATGATGTTCCCTATGTCGTTTGTCAACAAT TCGTTGCGCTACTCTATAGCGCGCCTCAAGCTGCTCATGCGTCGTCGTCT GTCGCTCTACTTGCATGACAAGTACCTGGCCAACAACACTTTCTATAAGC TGTCCAACCTCGACGCCCGCATTCGCAACGTCGACCAGATGCTCACTGTC GATATTGACCGCCTGTGTTCTTCGCTGGTCGACCTGTACTGCAACATATC CAAGCCTGTCTTCGACATTGTTCTGTTCAGTCGCCGCCTGGCTCGCAGTC TGGGCCCCTCGGGCCCGCTCTGCATGATCCTGTATTTTGCAGCGTGCTCC GTCGTTCTGCGCGCCATTCAGCCGCCGTTTGGACAGCTCGCAGCCGAGGA GCAGCGTCTGGAAGGCGAGTACCGTTTGCACCACTCACGCCTTATTACCC ATTCTGAGGAAATTGCCTTCTTTGGGGGCGCCGCCCGGGAGAAATTGTAC ATCAACCACTCGTTCGATAACCTGGTGGCTCACCTAAACAAGCTTTTCGC CGCGCGCTGGCGCAACGGCTTCGTGGACGCCGTTCTGGTCAAGTACGTCG CTACCATTGTCGGATACCTCGTGGTTTCACTGCCAGTGTTCTTCACAGAG TCGCCAGTGTTCCGACTGTTCTCGTCCGCAAATAGCGCGCGTCACAACGC CGCCAACGCGAACGCAGAGACCACATCAGCGTCCAACATTGCCGGGCTGT ACACCAGGAACTCTCGCCTGTTGCTGCAGTTGGCAGGAGCCATTGGAAGG CTGGTGCTCGCTGGAAAGGAGGTGACTCGTCTCACCGGATACACGCATCG CGTCTCTCGGCTGGAGCACGTGCTCGACGAGCTGTGTCGTGCGGGAGCAG TGCGACGACGGTTCGAATCGTCATCCGATTTGTTACATGATGCGCATTTG GCGCATCTAATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGACAG GGAGAGTAGTGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCA CGGTTTTGTGCGAAGGGCGTTCGTTGGAGATGGAGCGCGGCAGTCACGTG CTCACGACTgggcccaatgggtgcggaaagagctcgttattccgcgttct ggcgggattgtggccggtgtatggcggcacgatctaccgtccggctcgct ctcgtatcttctacgtgccgcaacggccgtaTCTAGCGTTAGGGACGTTG CGCGAGAACGTGACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGG CGCGACGGATGAGCTGATCATGCAGTTGTTGGAGAGAGTGCATCTGGGAG ACGTGGCGCGACGACGGGATGGACTGGACGCGGTGAAGGACTGGGCGGAG GTTTTGAGCGGCGGCCAGAAACAGCGGCTGGCGTTTGCGAGGCTGCTGTT CCATGCGCCGCAGTACGCCATTCTTGACGAGGCGTCGTCGGCGGTTTCAA TTGACGTGGAGAAGGCGCTGTACGAGGCGGTGAAGGAGGCGGGCATTACG GTGATCAGCGTGAGCCACCGGCCGAGTCTTTGGGAATTCCATGACCGCGT GCTGGCGTTTGACGGGGGTGGCGGGTATGAGTTCCGCGAGATCGGCGACG AGGACCTGCGCGCGGTGGACTCTGGCGCGGTGGGGTCGGCGGCCGAAAGA TAA back to top
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