Gcaud1303.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1303.t1
Unique NameGcaud1303.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length294
Homology
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BLAST of Gcaud1303.t1 vs. uniprot
Match: A0A2V3IZA2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZA2_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 2.450e-64
Identity = 118/256 (46.09%), Postives = 165/256 (64.45%), Query Frame = 0 
Query:    4 QSLLSALDNKIKERQAAGSVRRSHRNLGKDDIKTLYSSELLSKTTTRGFMTCIIVNMMMVTAFRKSELWALCMKDVTLMKRNGKEAWRVVGRIGCPDGAPKTQGGGLSMVNVRPKEIFIFDLTISELKVNVFQDLRKYLAIVQSSRADEDNLLAGVNYNAVQRKSFFKKGNLGVNTIGKYLTDACRDLGIKGEGVFDHVIVHGFRGIVVSQLYAAGFSDASVALRTGHRDFSSLHAYHILSGNLGEQQKAAIFGKS 259
            + +++AL NK++ERQAAGS+ RS   L K+DIK LYSS +LSK T RGF+T II  + ++T+ RK ELWAL MKDVTL    G++ W++VG  G   GA +TQ  G ++VN +PKE++I +       VN+F+D+ +Y+ IV + R  ED+ LA VNY A+ R+ FF++GNLG+++I  Y+ +AC  LGI GEGV DHV V G R  V+S L  +   + S       R+  +L   H   GNLG QQ+  I G S
Sbjct:  271 KGIVTALGNKVRERQAAGSIIRSRNTLSKEDIKKLYSSAVLSKQTPRGFITRIIFGLALMTSLRKRELWALRMKDVTLCVEQGEKVWKIVGCNGTSGGASETQARGWALVNSKPKEVYIRNTEHLGGLVNIFKDVEEYMQIVTTMRGPEDHFLASVNYTAIDRRKFFRRGNLGIHSIANYVKEACEVLGIVGEGVNDHVTVDGLRETVISNLADSDHGELS-------RESRTLKDKHNHRGNLGRQQQMTIRGNS 519
The following BLAST results are available for this feature:
BLAST of Gcaud1303.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZA2_9FLOR2.450e-6446.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 23..256
e-value: 3.1E-12
score: 48.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..293
NoneNo IPR availableCDDcd00397DNA_BRE_Ccoord: 34..240
e-value: 6.68595E-6
score: 43.6227
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 23..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3626_length_3163_cov_4.695964contigNODE_3626_length_3163_cov_4.695964:1647..2526 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1303.t1Gcaud1303.t1Gracilaria caudata M_176_S67 malemRNANODE_3626_length_3163_cov_4.695964 1647..2526 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1303.t1 ID=Gcaud1303.t1|Name=Gcaud1303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=294bp
XLQQSLLSALDNKIKERQAAGSVRRSHRNLGKDDIKTLYSSELLSKTTTR
GFMTCIIVNMMMVTAFRKSELWALCMKDVTLMKRNGKEAWRVVGRIGCPD
GAPKTQGGGLSMVNVRPKEIFIFDLTISELKVNVFQDLRKYLAIVQSSRA
DEDNLLAGVNYNAVQRKSFFKKGNLGVNTIGKYLTDACRDLGIKGEGVFD
HVIVHGFRGIVVSQLYAAGFSDASVALRTGHRDFSSLHAYHILSGNLGEQ
QKAAIFGKSVASAAPKRRSRSRRRLMKPTRRTTTEKQPVTMML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz