Gcaud7441.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7441.t1
Unique Name	Gcaud7441.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:78791..80446 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707005.1
PFAMs	DUF3223,La,RRM_1,RRM_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11090,ko:K15191
KEGG Pathway	ko05322,map05322
Evalue	3.21e-55
EggNOG OGs	COG5193@1\|root,KOG4213@2759\|Eukaryota
Description	nuclear histone mRNA catabolic process
COG category	JO
BRITE	ko00000,ko00001,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7441	Gcaud7441	Gracilaria caudata M_176_S67 male	gene	NODE_10_length_87931_cov_4.732901 78791..80446 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7441.t1	Gcaud7441.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_10_length_87931_cov_4.732901 78791..80446 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7441.t1.start1	Gcaud7441.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_10_length_87931_cov_4.732901 78791..78793 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7441.t1.CDS1	Gcaud7441.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 78791..79988 +
Gcaud7441.t1.CDS2	Gcaud7441.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 80295..80327 +
Gcaud7441.t1.CDS3	Gcaud7441.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_10_length_87931_cov_4.732901 80421..80446 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7441.t1.exon1	Gcaud7441.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 78791..79988 +
Gcaud7441.t1.exon2	Gcaud7441.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 80295..80327 +
Gcaud7441.t1.exon3	Gcaud7441.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_10_length_87931_cov_4.732901 80421..80446 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7441.t1.intron1	Gcaud7441.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_10_length_87931_cov_4.732901 79989..80294 +
Gcaud7441.t1.intron2	Gcaud7441.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_10_length_87931_cov_4.732901 80328..80420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7441.t1.stop1	Gcaud7441.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_10_length_87931_cov_4.732901 80444..80446 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+
coding sequence from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+

mRNA sequence

>Gcaud7441.t1 ID=Gcaud7441.t1|Name=Gcaud7441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=419bp
MVPSQAENGGEADLGAIRTQLEYYFSDSNLPRDKFLRAKTEENEKGYVSI
PILLSFKRMQSLGANVQNVIQAVSGSTLIGLDKAHTSIRRLLPLPEEDLF
PQRALFVKGWTPGSPEPTLEYFKELFAPSGNVLSVRVRRWKDETGRHFKG
SVFVEMESPEAVERVQAEEYTITVKDDSGYDVEKQLLVLPVDEYFSKKQK
EREEYLQRKKQERAKNPKRGRDGSRAVAKGEATTPDEKREFKLDDKTNDP
ETKCKPEPKTNGSMKDETDRKITPGLVLKFEGFGADISREDIREAFEPHG
EIAWVDFRIGDSEGHIRFSNEGAAKVACEAMQKVRTEFGGKVPTFSVLEG
EAEELYWKHVWEQKAASFRNSKKRRREHGRSGRGNKRFRSGRGRSGPRRE
QRRTSRARERCYTCLPAW*

spliced messenger RNA

>Gcaud7441.t1 ID=Gcaud7441.t1|Name=Gcaud7441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCATCACAAGCTGAAAATGGAGGGGAAGCTGACCTAGGAGCAAT
CCGTACCCAACTAGAGTACTACTTCTCGGACTCTAATCTACCAAGGGACA
AGTTTCTGCGAGCGAAAACAGAGGAGAACGAAAAAGGCTACGTTTCAATA
CCCATTTTACTTTCGTTTAAACGAATGCAATCTCTCGGAGCAAATGTGCA
GAATGTCATTCAAGCAGTAAGCGGCTCTACTCTCATTGGACTCGACAAGG
CACATACAAGTATAAGGCGACTTCTGCCGCTTCCTGAAGAGGATCTTTTT
CCTCAGCGCGCTTTATTCGTCAAGGGCTGGACTCCAGGAAGTCCTGAGCC
AACATTGGAGTACTTCAAGGAGCTGTTTGCCCCTTCTGGAAATGTCCTCT
CGGTTAGAGTTCGACGATGGAAGGACGAAACTGGAAGGCACTTCAAAGGG
TCAGTATTTGTAGAAATGGAAAGCCCAGAAGCAGTGGAAAGGGTGCAGGC
TGAAGAATATACCATCACTGTCAAAGATGATAGTGGATACGACGTCGAGA
AACAGCTGTTGGTGCTCCCGGTGGACGAATACTTCTCGAAGAAGCAAAAG
GAAAGGGAGGAATATTTGCAACGCAAAAAGCAGGAGCGTGCGAAGAACCC
AAAAAGAGGTAGAGACGGGTCCAGGGCAGTAGCTAAGGGCGAAGCCACAA
CGCCAGACGAGAAAAGAGAGTTTAAGCTTGACGATAAAACGAACGATCCC
GAAACGAAATGTAAGCCTGAGCCAAAGACAAATGGAAGTATGAAAGATGA
GACAGATCGCAAGATCACTCCAGGTCTTGTTCTCAAATTTGAAGGTTTCG
GCGCGGACATCTCTCGAGAAGATATCCGTGAGGCCTTCGAGCCTCACGGA
GAGATTGCGTGGGTAGATTTTCGAATTGGTGATTCTGAAGGTCACATCCG
CTTTTCCAATGAAGGGGCCGCGAAGGTCGCATGCGAAGCAATGCAAAAGG
TTAGGACGGAGTTCGGCGGCAAAGTGCCCACTTTTTCAGTCCTAGAAGGT
GAGGCGGAAGAGCTCTATTGGAAGCATGTCTGGGAGCAGAAGGCAGCGAG
CTTCAGAAATTCTAAGAAGCGACGCCGCGAACATGGTCGAAGTGGCAGGG
GAAACAAGAGGTTCCGTTCAGGAAGAGGAAGGTCTGGTCCTCGAAGAGAA
CAGCGTCGCACCTCCCGTGCAAGAGAGAGATGTTACACTTGCCTTCCAGC
CTGGTGA

protein sequence of Gcaud7441.t1

>Gcaud7441.t1 ID=Gcaud7441.t1|Name=Gcaud7441.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=419bp
MVPSQAENGGEADLGAIRTQLEYYFSDSNLPRDKFLRAKTEENEKGYVSI
PILLSFKRMQSLGANVQNVIQAVSGSTLIGLDKAHTSIRRLLPLPEEDLF
PQRALFVKGWTPGSPEPTLEYFKELFAPSGNVLSVRVRRWKDETGRHFKG
SVFVEMESPEAVERVQAEEYTITVKDDSGYDVEKQLLVLPVDEYFSKKQK
EREEYLQRKKQERAKNPKRGRDGSRAVAKGEATTPDEKREFKLDDKTNDP
ETKCKPEPKTNGSMKDETDRKITPGLVLKFEGFGADISREDIREAFEPHG
EIAWVDFRIGDSEGHIRFSNEGAAKVACEAMQKVRTEFGGKVPTFSVLEG
EAEELYWKHVWEQKAASFRNSKKRRREHGRSGRGNKRFRSGRGRSGPRRE
QRRTSRARERCYTCLPAW*

mRNA from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7441.t1 ID=Gcaud7441.t1|Name=Gcaud7441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+ (Gracilaria caudata M_176_S67 male)
ATGGTTCCATCACAAGCTGAAAATGGAGGGGAAGCTGACCTAGGAGCAAT
CCGTACCCAACTAGAGTACTACTTCTCGGACTCTAATCTACCAAGGGACA
AGTTTCTGCGAGCGAAAACAGAGGAGAACGAAAAAGGCTACGTTTCAATA
CCCATTTTACTTTCGTTTAAACGAATGCAATCTCTCGGAGCAAATGTGCA
GAATGTCATTCAAGCAGTAAGCGGCTCTACTCTCATTGGACTCGACAAGG
CACATACAAGTATAAGGCGACTTCTGCCGCTTCCTGAAGAGGATCTTTTT
CCTCAGCGCGCTTTATTCGTCAAGGGCTGGACTCCAGGAAGTCCTGAGCC
AACATTGGAGTACTTCAAGGAGCTGTTTGCCCCTTCTGGAAATGTCCTCT
CGGTTAGAGTTCGACGATGGAAGGACGAAACTGGAAGGCACTTCAAAGGG
TCAGTATTTGTAGAAATGGAAAGCCCAGAAGCAGTGGAAAGGGTGCAGGC
TGAAGAATATACCATCACTGTCAAAGATGATAGTGGATACGACGTCGAGA
AACAGCTGTTGGTGCTCCCGGTGGACGAATACTTCTCGAAGAAGCAAAAG
GAAAGGGAGGAATATTTGCAACGCAAAAAGCAGGAGCGTGCGAAGAACCC
AAAAAGAGGTAGAGACGGGTCCAGGGCAGTAGCTAAGGGCGAAGCCACAA
CGCCAGACGAGAAAAGAGAGTTTAAGCTTGACGATAAAACGAACGATCCC
GAAACGAAATGTAAGCCTGAGCCAAAGACAAATGGAAGTATGAAAGATGA
GACAGATCGCAAGATCACTCCAGGTCTTGTTCTCAAATTTGAAGGTTTCG
GCGCGGACATCTCTCGAGAAGATATCCGTGAGGCCTTCGAGCCTCACGGA
GAGATTGCGTGGGTAGATTTTCGAATTGGTGATTCTGAAGGTCACATCCG
CTTTTCCAATGAAGGGGCCGCGAAGGTCGCATGCGAAGCAATGCAAAAGG
TTAGGACGGAGTTCGGCGGCAAAGTGCCCACTTTTTCAGTCCTAGAAGGT
GAGGCGGAAGAGCTCTATTGGAAGCATGTCTGGGAGCAGAAGGCAGCGAG
CTTCAGAAATTCTAAGAAGCGACGCCGCGAACATGGTCGAAGTGGCAGGG
GAAACAAGAGGTTCCGTTCAGGAAGAGGAAGGTCTGGTCCTCGAAGAGGT
TCGTAACTTATTCTCCGAAAGGCGCAACCATGGTCTAGCCCGAAAAAAAA
ACCTGCTTCAAACACCGCTAGCAAAGGAGAGAGAGACGGTTCCATGTAGA
TGGGAATGTGAGTATCTAATCCAGTCGATGCGTTGGAACCTTACGTTTGA
ACAAACGCCGTACACGGTTAGCTCTACGTTTTCGTTTCTGGACAGACAAT
GTATCGGTTAGGAATTATCCTCCTATCCTACAATTCATTTGCTGTTTATT
TTGCAGGTTGACAAAGGAAGCCTCTTGCTAAGTTTATTCCGTGCCATCGC
ACAGAACAGCGTCGCACCTCCCGTGCAAGAGAGAGATGTATGTGTGCGTG
TACTGAATGCAGCATTTGAGCACTATCCATCAGCATTTGTAGGGGATGTG
CAAGTATGATATCTAACTGCGCATTACAAGGTTACACTTGCCTTCCAGCC
TGGTGA

Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+

>Gcaud7441.t1 ID=Gcaud7441.t1|Name=Gcaud7441.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1257bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:78791..80446+ (Gracilaria caudata M_176_S67 male)
ATGGTTCCATCACAAGCTGAAAATGGAGGGGAAGCTGACCTAGGAGCAAT
CCGTACCCAACTAGAGTACTACTTCTCGGACTCTAATCTACCAAGGGACA
AGTTTCTGCGAGCGAAAACAGAGGAGAACGAAAAAGGCTACGTTTCAATA
CCCATTTTACTTTCGTTTAAACGAATGCAATCTCTCGGAGCAAATGTGCA
GAATGTCATTCAAGCAGTAAGCGGCTCTACTCTCATTGGACTCGACAAGG
CACATACAAGTATAAGGCGACTTCTGCCGCTTCCTGAAGAGGATCTTTTT
CCTCAGCGCGCTTTATTCGTCAAGGGCTGGACTCCAGGAAGTCCTGAGCC
AACATTGGAGTACTTCAAGGAGCTGTTTGCCCCTTCTGGAAATGTCCTCT
CGGTTAGAGTTCGACGATGGAAGGACGAAACTGGAAGGCACTTCAAAGGG
TCAGTATTTGTAGAAATGGAAAGCCCAGAAGCAGTGGAAAGGGTGCAGGC
TGAAGAATATACCATCACTGTCAAAGATGATAGTGGATACGACGTCGAGA
AACAGCTGTTGGTGCTCCCGGTGGACGAATACTTCTCGAAGAAGCAAAAG
GAAAGGGAGGAATATTTGCAACGCAAAAAGCAGGAGCGTGCGAAGAACCC
AAAAAGAGGTAGAGACGGGTCCAGGGCAGTAGCTAAGGGCGAAGCCACAA
CGCCAGACGAGAAAAGAGAGTTTAAGCTTGACGATAAAACGAACGATCCC
GAAACGAAATGTAAGCCTGAGCCAAAGACAAATGGAAGTATGAAAGATGA
GACAGATCGCAAGATCACTCCAGGTCTTGTTCTCAAATTTGAAGGTTTCG
GCGCGGACATCTCTCGAGAAGATATCCGTGAGGCCTTCGAGCCTCACGGA
GAGATTGCGTGGGTAGATTTTCGAATTGGTGATTCTGAAGGTCACATCCG
CTTTTCCAATGAAGGGGCCGCGAAGGTCGCATGCGAAGCAATGCAAAAGG
TTAGGACGGAGTTCGGCGGCAAAGTGCCCACTTTTTCAGTCCTAGAAGGT
GAGGCGGAAGAGCTCTATTGGAAGCATGTCTGGGAGCAGAAGGCAGCGAG
CTTCAGAAATTCTAAGAAGCGACGCCGCGAACATGGTCGAAGTGGCAGGG
GAAACAAGAGGTTCCGTTCAGGAAGAGGAAGGTCTGGTCCTCGAAGAGAA
CAGCGTCGCACCTCCCGTGCAAGAGAGAGATGTTACACTTGCCTTCCAGC
CTGGTGA